Wall clock time and date at job start Mon Mar 30 2020 05:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47574 * 2 1 4 4 C 1.53008 * 109.46968 * 120.00012 * 2 1 3 5 5 C 1.52998 * 109.47131 * 64.99557 * 4 2 1 6 6 H 1.09001 * 109.47422 * 305.00323 * 5 4 2 7 7 N 1.46907 * 109.46926 * 65.00145 * 5 4 2 8 8 C 1.50691 * 109.47390 * 184.99906 * 5 4 2 9 9 C 1.38254 * 120.00360 * 280.02472 * 8 5 4 10 10 C 1.38216 * 120.00528 * 179.97438 * 9 8 5 11 11 C 1.38261 * 119.99683 * 359.75182 * 10 9 8 12 12 C 1.38212 * 119.99716 * 0.50410 * 11 10 9 13 13 C 1.50700 * 119.99804 * 179.77075 * 12 11 10 14 14 C 1.50706 * 109.47062 * 269.72032 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.38215 * 120.00217 * 99.99886 * 8 5 4 23 23 H 1.08998 * 109.46976 * 59.99769 * 1 2 3 24 24 H 1.08996 * 109.47499 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46757 * 300.00311 * 1 2 3 26 26 H 1.09001 * 109.47463 * 239.99704 * 2 1 3 27 27 H 1.08996 * 109.47179 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47157 * 300.00120 * 3 2 1 29 29 H 1.09001 * 109.46862 * 59.99946 * 3 2 1 30 30 H 1.09001 * 109.47079 * 304.99750 * 4 2 1 31 31 H 1.08992 * 109.47312 * 184.99699 * 4 2 1 32 32 H 1.00905 * 110.99816 * 296.04249 * 7 5 4 33 33 H 1.00896 * 111.00177 * 59.99937 * 7 5 4 34 34 H 1.08002 * 119.99952 * 0.02562 * 9 8 5 35 35 H 1.07998 * 120.00339 * 180.02562 * 10 9 8 36 36 H 1.07997 * 120.00049 * 180.27351 * 11 10 9 37 37 H 1.09004 * 109.47406 * 149.72738 * 13 12 11 38 38 H 1.08993 * 109.47274 * 29.72364 * 13 12 11 39 39 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 40 40 H 1.08009 * 119.99624 * 0.02562 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6351 -2.1955 1.1881 6 1 0.5562 -2.2707 1.0528 7 7 2.3165 -2.8439 0.0596 8 6 2.0292 -2.8784 2.4722 9 6 3.3372 -3.2811 2.6680 10 6 3.6988 -3.9070 3.8461 11 6 2.7534 -4.1259 4.8309 12 6 1.4446 -3.7281 4.6331 13 6 0.4131 -3.9713 5.7044 14 6 -0.2334 -5.3147 5.4836 15 1 0.0725 -5.9308 4.6510 16 6 -1.2146 -5.7576 6.3450 17 7 -1.5826 -5.0101 7.3626 18 14 -2.0153 -7.4230 6.0718 19 1 -3.0268 -7.6658 7.1316 20 1 -2.6769 -7.4419 4.7423 21 1 -0.9788 -8.4851 6.1240 22 6 1.0830 -3.1019 3.4547 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 3.1262 -0.6445 1.2953 32 1 2.0195 -2.4462 -0.8189 33 1 3.3187 -2.7876 0.1616 34 1 4.0767 -3.1058 1.9007 35 1 4.7207 -4.2211 3.9991 36 1 3.0368 -4.6110 5.7532 37 1 -0.3468 -3.1910 5.6611 38 1 0.8942 -3.9560 6.6823 39 1 -1.1666 -4.1454 7.5047 40 1 0.0611 -2.7873 3.3018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261340266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:22 Heat of formation + Delta-G solvation = -32.120785 kcal Electronic energy + Delta-G solvation = -17647.392937 eV Core-core repulsion = 15038.434639 eV Total energy + Delta-G solvation = -2608.958298 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.65227 -38.44691 -35.92848 -34.75267 -32.71070 -31.54070 -28.56788 -28.47744 -28.05901 -25.32004 -24.56181 -22.88744 -21.19288 -20.49154 -18.96024 -17.78343 -16.92624 -16.26025 -16.03116 -15.74838 -15.56909 -15.36788 -14.97906 -14.75842 -14.40105 -14.03874 -13.62137 -13.41656 -13.24700 -13.14231 -13.01477 -12.90267 -12.52899 -12.45577 -12.04996 -11.96176 -11.77386 -11.62781 -11.49988 -11.35164 -10.99165 -10.60898 -9.79875 -9.51609 -9.33477 -8.70176 -6.44866 0.51365 0.60162 1.50059 1.58425 1.78781 2.52753 2.92951 3.10136 3.56192 3.77908 3.91291 3.96059 4.06623 4.13601 4.20771 4.29936 4.35477 4.52694 4.64334 4.70055 4.72251 4.78723 4.82437 4.95483 4.97163 5.01221 5.04915 5.07857 5.21775 5.27420 5.28013 5.41238 5.44863 5.60165 5.72079 5.88404 5.96876 6.11237 6.18932 6.26652 6.51314 6.66619 7.35354 8.66130 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.004920 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.036907 B = 5689.693794 C = 6098.868253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.136 4.136 5 C 0.139 3.861 6 H 0.077 0.923 7 N -0.841 5.841 8 C -0.070 4.070 9 C -0.124 4.124 10 C -0.113 4.113 11 C -0.146 4.146 12 C -0.062 4.062 13 C 0.041 3.959 14 C -0.604 4.604 15 H 0.043 0.957 16 C -0.034 4.034 17 N -0.933 5.933 18 Si 1.118 2.882 19 H -0.278 1.278 20 H -0.270 1.270 21 H -0.269 1.269 22 C -0.136 4.136 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.352 0.648 33 H 0.347 0.653 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.108 0.892 37 H -0.004 1.004 38 H -0.002 1.002 39 H 0.255 0.745 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.212 9.741 -16.839 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.110 4.110 3 C -0.202 4.202 4 C -0.176 4.176 5 C 0.028 3.972 6 H 0.095 0.905 7 N -0.374 5.374 8 C -0.070 4.070 9 C -0.142 4.142 10 C -0.130 4.130 11 C -0.164 4.164 12 C -0.062 4.062 13 C 0.005 3.995 14 C -0.642 4.642 15 H 0.061 0.939 16 C -0.231 4.231 17 N -0.571 5.571 18 Si 0.938 3.062 19 H -0.203 1.203 20 H -0.195 1.195 21 H -0.194 1.194 22 C -0.154 4.154 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.126 0.874 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.065 0.935 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.729 8.052 -16.014 19.937 hybrid contribution 1.138 2.089 0.000 2.379 sum 9.868 10.140 -16.014 21.369 Atomic orbital electron populations 1.21938 0.95545 1.01687 1.01946 1.21104 0.95716 0.96692 0.97488 1.21817 1.01191 0.95296 1.01946 1.22376 1.01455 0.95004 0.98721 1.20215 0.98758 0.90731 0.87534 0.90493 1.58844 1.11696 1.62693 1.04177 1.19914 0.93664 0.98395 0.95062 1.21019 0.95702 0.99944 0.97558 1.21354 0.99695 0.98654 0.93330 1.21093 0.93005 1.01921 1.00427 1.20162 0.94847 0.95334 0.95888 1.18260 0.92562 0.96212 0.92511 1.22210 1.23629 1.03600 1.14770 0.93877 1.27468 0.95724 1.07676 0.92277 1.70918 1.43690 1.12445 1.30001 0.82935 0.76032 0.70511 0.76688 1.20338 1.19516 1.19418 1.20834 0.98971 1.01553 0.94086 0.91495 0.93075 0.93508 0.90077 0.92172 0.91695 0.93391 0.92941 0.90944 0.83271 0.83820 0.83459 0.83444 0.87407 0.98556 0.98366 0.93535 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.95 71.98 0.64 -2.06 16 2 C -0.09 -1.44 2.79 -10.79 -0.03 -1.47 16 3 C -0.15 -2.03 9.19 71.98 0.66 -1.37 16 4 C -0.14 -2.74 4.31 30.60 0.13 -2.61 16 5 C 0.14 3.43 2.91 44.16 0.13 3.56 16 6 H 0.08 2.12 6.21 -2.39 -0.01 2.10 16 7 N -0.84 -16.87 9.01 -171.80 -1.55 -18.42 16 8 C -0.07 -2.27 4.95 -19.87 -0.10 -2.37 16 9 C -0.12 -3.60 9.29 22.27 0.21 -3.39 16 10 C -0.11 -3.59 10.05 22.27 0.22 -3.37 16 11 C -0.15 -6.00 9.70 22.27 0.22 -5.79 16 12 C -0.06 -2.93 5.07 -19.87 -0.10 -3.03 16 13 C 0.04 2.32 4.42 29.10 0.13 2.45 16 14 C -0.60 -36.45 9.09 25.60 0.23 -36.21 16 15 H 0.04 2.60 7.74 -2.91 -0.02 2.58 16 16 C -0.03 -2.04 5.46 84.65 0.46 -1.58 16 17 N -0.93 -59.30 13.65 21.45 0.29 -59.01 16 18 Si 1.12 51.96 29.90 68.60 2.05 54.01 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 C -0.14 -5.66 9.33 22.27 0.21 -5.45 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 0.99 6.46 -2.39 -0.02 0.97 16 25 H 0.05 0.90 8.14 -2.38 -0.02 0.89 16 26 H 0.08 1.05 6.65 -2.39 -0.02 1.04 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.35 5.48 7.45 -89.69 -0.67 4.81 16 33 H 0.35 5.76 7.35 -89.70 -0.66 5.10 16 34 H 0.15 3.09 6.67 -2.91 -0.02 3.07 16 35 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 36 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 37 H 0.00 -0.22 7.96 -2.39 -0.02 -0.24 16 38 H 0.00 -0.11 7.94 -2.39 -0.02 -0.13 16 39 H 0.26 16.43 7.22 -92.71 -0.67 15.76 16 40 H 0.10 4.31 8.04 -2.91 -0.02 4.29 16 Total: -1.00 -69.68 322.18 3.60 -66.08 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.21 Total: 20.01 kcal Atomic # 6 Polarization: -65.69 SS G_CDS: 3.01 Total: -62.67 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -1.25 Total: -77.42 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 2.05 Total: 54.01 kcal Total: -69.68 3.60 -66.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261340266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.957 kcal (2) G-P(sol) polarization free energy of solvation -69.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds