Wall clock time and date at job start Mon Mar 30 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 5 5 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 6 6 H 1.09002 * 109.47153 * 180.02562 * 5 2 1 7 7 N 1.46896 * 109.46848 * 60.00159 * 5 2 1 8 8 C 1.50701 * 109.47212 * 300.00129 * 5 2 1 9 9 C 1.38256 * 119.99890 * 79.99969 * 8 5 2 10 10 C 1.38212 * 120.00015 * 179.97438 * 9 8 5 11 11 C 1.38255 * 120.00071 * 0.02562 * 10 9 8 12 12 C 1.38215 * 119.99963 * 359.97438 * 11 10 9 13 13 C 1.50693 * 119.99918 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47308 * 89.99655 * 13 12 11 15 15 H 1.07998 * 119.99713 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00034 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00020 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99829 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47126 * 60.00380 * 18 16 14 20 20 H 1.48494 * 109.46955 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47206 * 300.00391 * 18 16 14 22 22 C 1.38210 * 119.99944 * 259.72765 * 8 5 2 23 23 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 28 28 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 29 29 H 1.09001 * 109.47066 * 299.99881 * 4 2 1 30 30 H 1.08996 * 109.47747 * 59.99547 * 4 2 1 31 31 H 1.09002 * 109.47103 * 179.97438 * 4 2 1 32 32 H 1.00907 * 110.99811 * 176.04211 * 7 5 2 33 33 H 1.00900 * 111.00550 * 299.99950 * 7 5 2 34 34 H 1.08006 * 119.99749 * 0.02562 * 9 8 5 35 35 H 1.07999 * 119.99743 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.00003 * 180.02562 * 11 10 9 37 37 H 1.08999 * 109.47189 * 209.99560 * 13 12 11 38 38 H 1.09002 * 109.47702 * 329.99797 * 13 12 11 39 39 H 0.96994 * 119.99833 * 179.97438 * 17 16 14 40 40 H 1.07990 * 120.00261 * 359.97438 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 2.0401 -0.7212 1.2492 6 1 3.1301 -0.7208 1.2495 7 7 1.5504 -2.1062 1.2492 8 6 1.5377 -0.0108 2.4797 9 6 0.2465 -0.2272 2.9241 10 6 -0.2141 0.4239 4.0529 11 6 0.6162 1.2920 4.7374 12 6 1.9070 1.5083 4.2931 13 6 2.8122 2.4540 5.0396 14 6 3.5720 1.6936 6.0958 15 1 3.4154 0.6316 6.2144 16 6 4.4679 2.3535 6.9101 17 7 4.6590 3.6466 6.7654 18 14 5.4101 1.4108 8.2189 19 1 6.2253 0.3499 7.5744 20 1 6.3020 2.3427 8.9545 21 1 4.4517 0.7903 9.1685 22 6 2.3696 0.8526 3.1672 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7488 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.1301 -0.7207 -1.2494 32 1 1.9260 -2.6225 2.0305 33 1 0.5418 -2.1332 1.2491 34 1 -0.4020 -0.9056 2.3895 35 1 -1.2226 0.2546 4.4002 36 1 0.2564 1.8004 5.6197 37 1 3.5160 2.9093 4.3428 38 1 2.2138 3.2327 5.5124 39 1 5.2889 4.1109 7.3384 40 1 3.3797 1.0179 2.8229 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261354930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:25 Heat of formation + Delta-G solvation = -4.124044 kcal Electronic energy + Delta-G solvation = -18193.058819 eV Core-core repulsion = 15585.314551 eV Total energy + Delta-G solvation = -2607.744268 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.77633 -37.22281 -33.54484 -32.67301 -31.10000 -30.17191 -27.55543 -26.89550 -26.67641 -24.71847 -23.21150 -21.46666 -20.04944 -18.23168 -16.48207 -16.26868 -15.76783 -15.03586 -14.75506 -14.47127 -14.27302 -13.85368 -13.35252 -13.11249 -12.58308 -12.43007 -12.25232 -12.01732 -11.79019 -11.71267 -11.51081 -11.28943 -11.12076 -10.84745 -10.67216 -10.59445 -10.47345 -10.43234 -10.30086 -9.56765 -9.49165 -8.68490 -8.44012 -8.13427 -7.78348 -6.06751 -4.10854 1.96504 2.07985 3.29918 3.34180 3.37274 4.32566 4.48873 4.63108 4.88219 5.00152 5.09872 5.27569 5.32814 5.40249 5.52523 5.67147 5.70231 5.77767 5.83261 5.94240 5.98392 6.02571 6.08493 6.13306 6.22110 6.27077 6.33563 6.48035 6.55708 6.60165 6.73989 7.01987 7.09225 7.17061 7.30532 7.47473 7.51574 7.71067 7.82719 7.88784 8.29102 8.94036 9.53065 11.03136 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.029501 B = 0.005391 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.879889 B = 5192.967188 C = 5339.218147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C -0.145 4.145 4 C -0.131 4.131 5 C 0.142 3.858 6 H 0.084 0.916 7 N -0.838 5.838 8 C -0.118 4.118 9 C -0.147 4.147 10 C -0.123 4.123 11 C -0.126 4.126 12 C -0.031 4.031 13 C 0.048 3.952 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.113 4.113 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.341 0.659 33 H 0.336 0.664 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.933 -7.439 -12.175 16.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.054 4.054 3 C -0.202 4.202 4 C -0.189 4.189 5 C 0.030 3.970 6 H 0.102 0.898 7 N -0.367 5.367 8 C -0.120 4.120 9 C -0.166 4.166 10 C -0.141 4.141 11 C -0.144 4.144 12 C -0.031 4.031 13 C 0.011 3.989 14 C -0.551 4.551 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.131 4.131 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.452 -7.374 -12.826 16.565 hybrid contribution 0.113 -0.128 1.845 1.853 sum -7.339 -7.503 -10.980 15.190 Atomic orbital electron populations 1.22060 0.95106 1.01386 1.02110 1.20433 0.95540 0.95070 0.94308 1.21913 1.01049 0.95319 1.01966 1.21752 1.00598 1.00766 0.95738 1.20406 0.99184 0.86698 0.90667 0.89795 1.59104 1.13945 1.12800 1.50826 1.20565 0.94631 0.99191 0.97625 1.20614 0.95509 1.02439 0.98017 1.20977 0.99124 0.97987 0.96019 1.21088 0.94228 0.99274 0.99841 1.20696 0.93982 0.95505 0.92912 1.18352 0.93115 0.92971 0.94487 1.21004 1.22811 0.94859 1.16386 0.92623 1.25006 0.96840 0.94904 0.97498 1.69945 1.35927 1.07975 1.39441 0.86601 0.79814 0.79646 0.81656 1.20154 1.21174 1.20179 1.20931 0.99119 0.97274 0.95806 0.91584 0.93146 0.92757 0.92664 0.92994 0.91849 0.91627 0.93640 0.93147 0.84632 0.84954 0.87546 0.87295 0.86653 0.95387 0.95410 0.92756 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 7.08 37.16 0.26 -1.41 16 2 C -0.05 -0.63 0.62 -154.51 -0.10 -0.73 16 3 C -0.14 -1.84 8.07 37.16 0.30 -1.54 16 4 C -0.13 -1.44 8.32 37.15 0.31 -1.13 16 5 C 0.14 1.88 2.41 -68.87 -0.17 1.71 16 6 H 0.08 1.20 8.00 -51.93 -0.42 0.78 16 7 N -0.84 -9.67 8.23 -5.66 -0.05 -9.71 16 8 C -0.12 -1.85 3.78 -104.62 -0.40 -2.25 16 9 C -0.15 -2.20 7.08 -39.58 -0.28 -2.48 16 10 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 11 C -0.13 -2.45 9.70 -39.58 -0.38 -2.83 16 12 C -0.03 -0.66 5.07 -104.63 -0.53 -1.19 16 13 C 0.05 1.22 5.10 -29.04 -0.15 1.07 16 14 C -0.51 -14.35 9.09 -34.44 -0.31 -14.66 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 18 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.11 -2.15 8.39 -39.58 -0.33 -2.48 16 23 H 0.07 0.82 5.60 -51.93 -0.29 0.53 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.56 6.67 -51.93 -0.35 0.21 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.92 6.65 -51.93 -0.35 0.58 16 29 H 0.06 0.72 7.60 -51.93 -0.39 0.33 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.34 3.90 9.06 -39.29 -0.36 3.55 16 33 H 0.34 3.57 5.53 -39.29 -0.22 3.35 16 34 H 0.11 1.32 5.85 -52.48 -0.31 1.02 16 35 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 37 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 38 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.11 2.20 8.03 -52.49 -0.42 1.78 16 LS Contribution 314.63 15.07 4.74 4.74 Total: -1.00 -28.74 314.63 -8.29 -37.04 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.44 Total: 5.80 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: -2.27 Total: -28.74 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.69 Total: -35.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.74 -8.29 -37.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261354930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.912 kcal (2) G-P(sol) polarization free energy of solvation -28.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds