Wall clock time and date at job start Mon Mar 30 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 5 5 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 6 6 H 1.09002 * 109.47153 * 180.02562 * 5 2 1 7 7 N 1.46896 * 109.46848 * 60.00159 * 5 2 1 8 8 C 1.50701 * 109.47212 * 300.00129 * 5 2 1 9 9 C 1.38256 * 119.99890 * 79.99969 * 8 5 2 10 10 C 1.38212 * 120.00015 * 179.97438 * 9 8 5 11 11 C 1.38255 * 120.00071 * 0.02562 * 10 9 8 12 12 C 1.38215 * 119.99963 * 359.97438 * 11 10 9 13 13 C 1.50693 * 119.99918 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47308 * 89.99655 * 13 12 11 15 15 H 1.07998 * 119.99713 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00034 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00020 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99829 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47126 * 60.00380 * 18 16 14 20 20 H 1.48494 * 109.46955 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47206 * 300.00391 * 18 16 14 22 22 C 1.38210 * 119.99944 * 259.72765 * 8 5 2 23 23 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 28 28 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 29 29 H 1.09001 * 109.47066 * 299.99881 * 4 2 1 30 30 H 1.08996 * 109.47747 * 59.99547 * 4 2 1 31 31 H 1.09002 * 109.47103 * 179.97438 * 4 2 1 32 32 H 1.00907 * 110.99811 * 176.04211 * 7 5 2 33 33 H 1.00900 * 111.00550 * 299.99950 * 7 5 2 34 34 H 1.08006 * 119.99749 * 0.02562 * 9 8 5 35 35 H 1.07999 * 119.99743 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.00003 * 180.02562 * 11 10 9 37 37 H 1.08999 * 109.47189 * 209.99560 * 13 12 11 38 38 H 1.09002 * 109.47702 * 329.99797 * 13 12 11 39 39 H 0.96994 * 119.99833 * 179.97438 * 17 16 14 40 40 H 1.07990 * 120.00261 * 359.97438 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 2.0401 -0.7212 1.2492 6 1 3.1301 -0.7208 1.2495 7 7 1.5504 -2.1062 1.2492 8 6 1.5377 -0.0108 2.4797 9 6 0.2465 -0.2272 2.9241 10 6 -0.2141 0.4239 4.0529 11 6 0.6162 1.2920 4.7374 12 6 1.9070 1.5083 4.2931 13 6 2.8122 2.4540 5.0396 14 6 3.5720 1.6936 6.0958 15 1 3.4154 0.6316 6.2144 16 6 4.4679 2.3535 6.9101 17 7 4.6590 3.6466 6.7654 18 14 5.4101 1.4108 8.2189 19 1 6.2253 0.3499 7.5744 20 1 6.3020 2.3427 8.9545 21 1 4.4517 0.7903 9.1685 22 6 2.3696 0.8526 3.1672 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7488 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.1301 -0.7207 -1.2494 32 1 1.9260 -2.6225 2.0305 33 1 0.5418 -2.1332 1.2491 34 1 -0.4020 -0.9056 2.3895 35 1 -1.2226 0.2546 4.4002 36 1 0.2564 1.8004 5.6197 37 1 3.5160 2.9093 4.3428 38 1 2.2138 3.2327 5.5124 39 1 5.2889 4.1109 7.3384 40 1 3.3797 1.0179 2.8229 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261354930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:25 Heat of formation + Delta-G solvation = -20.314782 kcal Electronic energy + Delta-G solvation = -18193.760902 eV Core-core repulsion = 15585.314551 eV Total energy + Delta-G solvation = -2608.446351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.02512 -38.47668 -35.45278 -33.90665 -32.77081 -31.48446 -29.04289 -28.04736 -27.80844 -25.88547 -25.14534 -22.86846 -21.47146 -19.33071 -18.54621 -17.61627 -16.96038 -16.59793 -16.16435 -15.91006 -15.52895 -14.92484 -14.59971 -14.46918 -14.20467 -14.01634 -13.45078 -13.32071 -13.16020 -12.97714 -12.87894 -12.67978 -12.56533 -12.43347 -12.36456 -12.01570 -11.68794 -11.54209 -11.51551 -11.41007 -11.26154 -10.64453 -9.75972 -9.52848 -9.25868 -8.23768 -6.37867 0.55862 0.64210 1.36617 1.39345 1.47845 2.36488 2.98501 3.06639 3.63806 3.77155 4.01815 4.06393 4.16515 4.22525 4.27047 4.39294 4.61948 4.66851 4.73794 4.83504 4.86243 4.93439 5.01724 5.04830 5.13918 5.16652 5.20528 5.28191 5.33541 5.37130 5.40733 5.52708 5.62116 5.64472 5.69483 5.75389 6.07544 6.09981 6.25841 6.28365 6.62387 6.74473 7.30932 8.85466 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.029501 B = 0.005391 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.879889 B = 5192.967188 C = 5339.218147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C -0.145 4.145 4 C -0.126 4.126 5 C 0.147 3.853 6 H 0.070 0.930 7 N -0.829 5.829 8 C -0.104 4.104 9 C -0.131 4.131 10 C -0.114 4.114 11 C -0.144 4.144 12 C -0.063 4.063 13 C 0.057 3.943 14 C -0.530 4.530 15 H 0.052 0.948 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.966 3.034 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.126 4.126 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.344 0.656 33 H 0.346 0.654 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.107 0.893 37 H -0.001 1.001 38 H 0.000 1.000 39 H 0.266 0.734 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.361 -10.031 -13.212 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.051 4.051 3 C -0.203 4.203 4 C -0.183 4.183 5 C 0.035 3.965 6 H 0.089 0.911 7 N -0.358 5.358 8 C -0.106 4.106 9 C -0.149 4.149 10 C -0.132 4.132 11 C -0.162 4.162 12 C -0.064 4.064 13 C 0.020 3.980 14 C -0.568 4.568 15 H 0.071 0.929 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.192 1.192 22 C -0.145 4.145 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.125 0.875 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.075 0.925 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.894 -9.977 -13.872 19.264 hybrid contribution 0.507 0.677 2.078 2.243 sum -8.387 -9.300 -11.794 17.203 Atomic orbital electron populations 1.22045 0.93952 1.02399 1.02081 1.20419 0.96416 0.94131 0.94085 1.21915 1.00697 0.96187 1.01476 1.21701 1.00304 1.00880 0.95434 1.20359 0.98574 0.87546 0.90062 0.91136 1.59073 1.14641 1.11160 1.50933 1.20823 0.94523 0.97562 0.97709 1.21025 0.95207 1.01606 0.97106 1.21308 1.00032 0.96253 0.95583 1.21106 0.93923 1.00756 1.00448 1.20372 0.94694 0.96787 0.94498 1.18077 0.92870 0.93163 0.93850 1.21323 1.23389 0.94879 1.17210 0.92923 1.25944 0.97745 0.95825 0.99816 1.70075 1.36685 1.09661 1.40585 0.85490 0.78465 0.78379 0.78684 1.19270 1.20366 1.19197 1.20850 0.99238 0.98555 0.95825 0.92803 0.92079 0.91115 0.93331 0.91513 0.94238 0.91225 0.92409 0.93666 0.84283 0.83870 0.83710 0.83798 0.87475 0.98316 0.98191 0.92497 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 7.08 71.98 0.51 -2.27 16 2 C -0.05 -1.08 0.62 -52.18 -0.03 -1.11 16 3 C -0.14 -3.59 8.07 71.98 0.58 -3.01 16 4 C -0.13 -2.40 8.32 71.98 0.60 -1.80 16 5 C 0.15 3.61 2.41 44.17 0.11 3.72 16 6 H 0.07 1.96 8.00 -2.39 -0.02 1.94 16 7 N -0.83 -16.37 8.23 -171.81 -1.41 -17.78 16 8 C -0.10 -3.14 3.78 -19.87 -0.08 -3.21 16 9 C -0.13 -3.51 7.08 22.27 0.16 -3.35 16 10 C -0.11 -3.44 10.05 22.27 0.22 -3.21 16 11 C -0.14 -5.67 9.70 22.27 0.22 -5.45 16 12 C -0.06 -2.87 5.07 -19.87 -0.10 -2.97 16 13 C 0.06 3.17 5.10 29.10 0.15 3.32 16 14 C -0.53 -31.01 9.09 25.60 0.23 -30.78 16 15 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 16 C 0.00 0.29 5.46 84.66 0.46 0.75 16 17 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 18 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 C -0.13 -4.97 8.39 22.27 0.19 -4.78 16 23 H 0.05 1.15 5.60 -2.39 -0.01 1.14 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.11 6.67 -2.39 -0.02 1.09 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 1.16 6.65 -2.39 -0.02 1.14 16 29 H 0.07 1.29 7.60 -2.39 -0.02 1.27 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.34 6.80 9.06 -89.69 -0.81 5.99 16 33 H 0.35 5.75 5.53 -89.69 -0.50 5.26 16 34 H 0.15 2.83 5.85 -2.91 -0.02 2.81 16 35 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.11 4.27 8.06 -2.91 -0.02 4.24 16 37 H 0.00 -0.09 8.09 -2.39 -0.02 -0.11 16 38 H 0.00 -0.01 8.09 -2.39 -0.02 -0.03 16 39 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 40 H 0.10 4.12 8.03 -2.92 -0.02 4.09 16 Total: -1.00 -64.78 314.63 3.83 -60.96 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -0.29 Total: 20.86 kcal Atomic # 6 Polarization: -57.39 SS G_CDS: 3.21 Total: -54.17 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -1.13 Total: -74.49 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -64.78 3.83 -60.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261354930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.641 kcal (2) G-P(sol) polarization free energy of solvation -64.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds