Wall clock time and date at job start Mon Mar 30 2020 05:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47313 * 2 1 4 4 C 1.52995 * 109.47430 * 120.00203 * 2 1 3 5 5 C 1.53001 * 109.47332 * 175.00212 * 4 2 1 6 6 H 1.08996 * 109.47352 * 54.99600 * 5 4 2 7 7 N 1.46905 * 109.46947 * 294.99830 * 5 4 2 8 8 C 1.50697 * 109.47213 * 174.99878 * 5 4 2 9 9 C 1.38261 * 120.00068 * 99.99917 * 8 5 4 10 10 C 1.38214 * 120.00046 * 179.97438 * 9 8 5 11 11 C 1.38255 * 119.99769 * 0.02562 * 10 9 8 12 12 C 1.38210 * 120.00555 * 359.97438 * 11 10 9 13 13 C 1.38211 * 120.00291 * 279.72591 * 8 5 4 14 14 C 1.50705 * 119.99868 * 359.97438 * 13 8 5 15 15 C 1.50701 * 109.47126 * 84.99893 * 14 13 8 16 16 H 1.07993 * 119.99865 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99896 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00027 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99881 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46956 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47060 * 119.99771 * 19 17 15 22 22 H 1.48500 * 109.46965 * 239.99773 * 19 17 15 23 23 H 1.09006 * 109.47088 * 299.99832 * 1 2 3 24 24 H 1.08997 * 109.47265 * 59.99698 * 1 2 3 25 25 H 1.09003 * 109.46884 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47175 * 240.00666 * 2 1 3 27 27 H 1.09001 * 109.47395 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46999 * 300.00104 * 3 2 1 29 29 H 1.08998 * 109.47005 * 59.99740 * 3 2 1 30 30 H 1.08997 * 109.47653 * 54.99859 * 4 2 1 31 31 H 1.09001 * 109.47049 * 294.99807 * 4 2 1 32 32 H 1.00901 * 110.99869 * 176.04901 * 7 5 4 33 33 H 1.00896 * 110.99543 * 300.00023 * 7 5 4 34 34 H 1.08002 * 119.99824 * 359.97438 * 9 8 5 35 35 H 1.08002 * 119.99582 * 179.97438 * 10 9 8 36 36 H 1.08000 * 119.99627 * 179.97438 * 11 10 9 37 37 H 1.07997 * 120.00237 * 179.97438 * 12 11 10 38 38 H 1.09004 * 109.47278 * 205.00207 * 14 13 8 39 39 H 1.09006 * 109.46918 * 325.00261 * 14 13 8 40 40 H 0.97001 * 119.99971 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8310 1.1879 6 1 3.9954 0.1611 1.0526 7 7 3.9490 -1.6895 0.0594 8 6 4.0774 -1.4302 2.4721 9 6 4.4109 -2.7709 2.5246 10 6 4.8815 -3.3204 3.7023 11 6 5.0182 -2.5294 4.8280 12 6 4.6848 -1.1891 4.7755 13 6 4.2194 -0.6383 3.5959 14 6 3.8622 0.8246 3.5368 15 6 2.3849 0.9914 3.7830 16 1 1.7665 0.1248 3.9645 17 6 1.8227 2.2503 3.7765 18 7 2.5758 3.3057 3.5560 19 14 -0.0085 2.4571 4.0824 20 1 -0.6270 1.1251 4.3028 21 1 -0.2171 3.3050 5.2834 22 1 -0.6372 3.1053 2.9035 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6055 -1.7198 1.2951 31 1 1.7517 -0.1583 2.1369 32 1 4.9523 -1.7261 -0.0419 33 1 3.5618 -2.6156 0.1615 34 1 4.3037 -3.3889 1.6454 35 1 5.1416 -4.3678 3.7434 36 1 5.3855 -2.9588 5.7483 37 1 4.7912 -0.5714 5.6550 38 1 4.4212 1.3662 4.3000 39 1 4.1136 1.2206 2.5528 40 1 2.1802 4.1913 3.5510 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261360171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:31 Heat of formation + Delta-G solvation = -17.446036 kcal Electronic energy + Delta-G solvation = -18873.732945 eV Core-core repulsion = 16265.410992 eV Total energy + Delta-G solvation = -2608.321953 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.73787 -37.84273 -35.46000 -34.88827 -33.04881 -30.82320 -28.86048 -28.58478 -27.89823 -25.17948 -24.46719 -22.11901 -21.15473 -20.45928 -18.40529 -17.50152 -17.20571 -16.49469 -16.13391 -15.64910 -15.38847 -14.84839 -14.68717 -14.55177 -14.30997 -13.95075 -13.46901 -13.33797 -13.15812 -12.91577 -12.80414 -12.63340 -12.52052 -12.34026 -12.15232 -11.86638 -11.51472 -11.42097 -11.37194 -11.19996 -11.01450 -10.47942 -9.64015 -9.48546 -9.25448 -8.13231 -6.18666 0.59014 0.68061 1.35468 1.39579 1.48502 2.41060 3.02699 3.18544 3.82969 3.94598 4.12118 4.22301 4.23664 4.26942 4.33314 4.42148 4.60411 4.73716 4.80423 4.84566 4.88758 5.06545 5.08784 5.14669 5.19804 5.23990 5.34193 5.37096 5.44196 5.46578 5.57240 5.62454 5.70007 5.74806 5.82438 5.94240 6.06708 6.20140 6.33437 6.41070 6.73911 6.86714 7.44053 8.96004 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.010494 C = 0.007526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.641504 B = 2667.491526 C = 3719.469519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C -0.134 4.134 4 C -0.118 4.118 5 C 0.148 3.852 6 H 0.066 0.934 7 N -0.831 5.831 8 C -0.129 4.129 9 C -0.126 4.126 10 C -0.136 4.136 11 C -0.125 4.125 12 C -0.144 4.144 13 C -0.065 4.065 14 C 0.062 3.938 15 C -0.493 4.493 16 H 0.052 0.948 17 C 0.025 3.975 18 N -0.920 5.920 19 Si 0.931 3.069 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.277 1.277 23 H 0.031 0.969 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.030 0.970 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.344 0.656 33 H 0.344 0.656 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.107 0.893 38 H -0.008 1.008 39 H 0.011 0.989 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.261 -11.827 -4.881 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.094 4.094 3 C -0.192 4.192 4 C -0.156 4.156 5 C 0.037 3.963 6 H 0.084 0.916 7 N -0.361 5.361 8 C -0.131 4.131 9 C -0.144 4.144 10 C -0.154 4.154 11 C -0.143 4.143 12 C -0.162 4.162 13 C -0.066 4.066 14 C 0.025 3.975 15 C -0.531 4.531 16 H 0.070 0.930 17 C -0.174 4.174 18 N -0.560 5.560 19 Si 0.757 3.243 20 H -0.189 1.189 21 H -0.209 1.209 22 H -0.202 1.202 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.126 0.874 38 H 0.010 0.990 39 H 0.029 0.971 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.840 -11.120 -5.372 12.378 hybrid contribution -0.310 0.367 1.345 1.428 sum 0.531 -10.753 -4.027 11.494 Atomic orbital electron populations 1.21835 0.95709 1.01698 1.00926 1.20881 0.94860 0.95140 0.98472 1.21723 1.00192 0.97079 1.00185 1.21958 0.93277 0.99995 1.00335 1.20101 0.95815 0.95687 0.84717 0.91612 1.58984 1.16663 1.16977 1.43458 1.20841 1.00531 0.94707 0.97017 1.21157 1.00247 0.93784 0.99248 1.21311 1.00882 1.00609 0.92604 1.21332 1.00320 0.93043 0.99630 1.21194 1.01300 0.96393 0.97314 1.20342 0.95286 0.97314 0.93617 1.18068 0.95829 0.87836 0.95726 1.20992 0.92930 0.91853 1.47319 0.93031 1.25510 1.00906 0.95793 0.95209 1.70054 1.36682 0.98629 1.50644 0.85908 0.82044 0.78495 0.77903 1.18915 1.20903 1.20232 0.95012 0.91895 0.91793 0.89882 0.94089 0.92813 0.95037 0.93103 0.89734 0.84352 0.84168 0.84260 0.83411 0.84211 0.87450 0.98987 0.97102 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.19 71.98 0.66 -3.84 16 2 C -0.08 -2.57 2.86 -10.80 -0.03 -2.60 16 3 C -0.13 -5.22 8.95 71.98 0.64 -4.57 16 4 C -0.12 -4.41 4.25 30.59 0.13 -4.28 16 5 C 0.15 5.28 2.31 44.17 0.10 5.38 16 6 H 0.07 2.78 4.65 -2.39 -0.01 2.77 16 7 N -0.83 -22.47 8.08 -171.80 -1.39 -23.86 16 8 C -0.13 -4.75 5.07 -19.87 -0.10 -4.85 16 9 C -0.13 -3.72 9.25 22.27 0.21 -3.51 16 10 C -0.14 -3.73 10.05 22.27 0.22 -3.50 16 11 C -0.13 -3.85 10.05 22.27 0.22 -3.62 16 12 C -0.14 -5.59 9.68 22.27 0.22 -5.37 16 13 C -0.07 -2.81 5.07 -19.86 -0.10 -2.91 16 14 C 0.06 3.21 4.59 29.10 0.13 3.34 16 15 C -0.49 -26.51 6.45 25.60 0.17 -26.35 16 16 H 0.05 2.81 6.99 -2.91 -0.02 2.79 16 17 C 0.02 1.36 5.46 84.66 0.46 1.82 16 18 N -0.92 -53.47 13.29 21.45 0.28 -53.19 16 19 Si 0.93 43.51 29.54 68.60 2.03 45.54 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 2.62 7.62 -2.39 -0.02 2.60 16 27 H 0.04 1.65 6.46 -2.39 -0.02 1.63 16 28 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 3.83 4.04 -2.39 -0.01 3.82 16 32 H 0.34 8.38 9.06 -89.69 -0.81 7.57 16 33 H 0.34 7.94 7.29 -89.70 -0.65 7.29 16 34 H 0.14 3.17 6.25 -2.91 -0.02 3.15 16 35 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 37 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 38 H -0.01 -0.47 8.05 -2.39 -0.02 -0.48 16 39 H 0.01 0.60 6.32 -2.38 -0.02 0.58 16 40 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -60.18 313.52 3.43 -56.75 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.43 Total: 29.62 kcal Atomic # 6 Polarization: -57.80 SS G_CDS: 2.94 Total: -54.87 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -1.10 Total: -77.05 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -60.18 3.43 -56.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.309 kcal (2) G-P(sol) polarization free energy of solvation -60.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds