Wall clock time and date at job start Mon Mar 30 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 C 1.52997 * 109.47469 * 184.99697 * 4 2 1 6 6 H 1.09001 * 109.47097 * 305.00356 * 5 4 2 7 7 N 1.46899 * 109.46936 * 64.99448 * 5 4 2 8 8 C 1.50691 * 109.47463 * 184.99803 * 5 4 2 9 9 C 1.38259 * 120.00008 * 264.72905 * 8 5 4 10 10 C 1.38219 * 119.99982 * 179.74012 * 9 8 5 11 11 C 1.38252 * 119.99878 * 0.53107 * 10 9 8 12 12 C 1.38218 * 120.00209 * 359.74336 * 11 10 9 13 13 C 1.38217 * 120.00238 * 84.99931 * 8 5 4 14 14 C 1.50699 * 119.99628 * 0.02562 * 13 8 5 15 15 C 1.50696 * 109.46987 * 85.00080 * 14 13 8 16 16 H 1.08000 * 120.00272 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00278 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99610 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00301 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47164 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47006 * 119.99456 * 19 17 15 22 22 H 1.48497 * 109.47382 * 239.99666 * 19 17 15 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 31 31 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 32 32 H 1.00900 * 111.00449 * 296.05100 * 7 5 4 33 33 H 1.00909 * 110.99713 * 60.00350 * 7 5 4 34 34 H 1.08002 * 120.00131 * 359.97438 * 9 8 5 35 35 H 1.07999 * 120.00275 * 180.29055 * 10 9 8 36 36 H 1.08000 * 120.00182 * 179.76576 * 11 10 9 37 37 H 1.07996 * 120.00461 * 179.97438 * 12 11 10 38 38 H 1.08998 * 109.47145 * 205.00032 * 14 13 8 39 39 H 1.08998 * 109.47286 * 325.00326 * 14 13 8 40 40 H 0.96998 * 119.99763 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.8309 -1.1881 6 1 3.9954 0.1612 -1.0528 7 7 3.9491 -1.6894 -0.0597 8 6 4.0773 -1.4301 -2.4723 9 6 4.3181 -2.7891 -2.5534 10 6 4.7830 -3.3395 -3.7329 11 6 5.0178 -2.5293 -4.8283 12 6 4.7826 -1.1699 -4.7456 13 6 4.3121 -0.6202 -3.5675 14 6 4.0560 0.8621 -3.4770 15 6 5.2654 1.5461 -2.8936 16 1 6.1326 0.9655 -2.6157 17 6 5.2646 2.9131 -2.7136 18 7 4.2084 3.6201 -3.0516 19 14 6.7640 3.7610 -1.9911 20 1 7.8110 2.7497 -1.6974 21 1 7.2904 4.7507 -2.9652 22 1 6.3825 4.4567 -0.7358 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6054 -1.7198 -1.2952 31 1 1.7516 -0.1583 -2.1370 32 1 3.6731 -1.2769 0.8189 33 1 3.5618 -2.6156 -0.1617 34 1 4.1392 -3.4213 -1.6962 35 1 4.9666 -4.4018 -3.7977 36 1 5.3847 -2.9588 -5.7489 37 1 4.9664 -0.5369 -5.6011 38 1 3.8598 1.2584 -4.4733 39 1 3.1923 1.0433 -2.8373 40 1 4.2079 4.5819 -2.9253 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261360172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:34 Heat of formation + Delta-G solvation = -22.242255 kcal Electronic energy + Delta-G solvation = -18571.393110 eV Core-core repulsion = 15962.863177 eV Total energy + Delta-G solvation = -2608.529933 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.67999 -38.15178 -35.44011 -34.75394 -33.03116 -31.02492 -28.96620 -28.40457 -28.01227 -25.26962 -24.50074 -22.21924 -21.16061 -20.58189 -18.47038 -17.70441 -16.83772 -16.47158 -16.10829 -15.74608 -15.54753 -15.04151 -14.74471 -14.44511 -14.15991 -13.97538 -13.52939 -13.31257 -13.19777 -13.15866 -12.91559 -12.67483 -12.60930 -12.44350 -12.22622 -11.96295 -11.65311 -11.55016 -11.46450 -11.35568 -11.00014 -10.55045 -9.65433 -9.46842 -9.14825 -8.16158 -6.26535 0.66533 0.73279 1.35738 1.37951 1.50285 2.40304 3.07213 3.14290 3.72973 3.84518 3.99784 4.03261 4.21832 4.26674 4.35343 4.44978 4.51714 4.68261 4.73221 4.78279 4.80398 4.87690 5.00474 5.04444 5.09022 5.18034 5.22969 5.29612 5.33087 5.41475 5.46032 5.51047 5.64009 5.73729 5.74894 5.86495 6.17159 6.20727 6.36028 6.39788 6.75529 6.84102 7.40166 8.92192 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.010383 C = 0.006916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.109022 B = 2696.066041 C = 4047.457492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.143 4.143 4 C -0.131 4.131 5 C 0.134 3.866 6 H 0.076 0.924 7 N -0.838 5.838 8 C -0.089 4.089 9 C -0.111 4.111 10 C -0.141 4.141 11 C -0.125 4.125 12 C -0.148 4.148 13 C -0.070 4.070 14 C 0.061 3.939 15 C -0.513 4.513 16 H 0.043 0.957 17 C 0.015 3.985 18 N -0.921 5.921 19 Si 0.949 3.051 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.275 1.275 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.347 0.653 33 H 0.344 0.656 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.106 0.894 38 H -0.010 1.010 39 H 0.020 0.980 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 -12.081 5.235 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 C -0.200 4.200 4 C -0.171 4.171 5 C 0.023 3.977 6 H 0.094 0.906 7 N -0.370 5.370 8 C -0.089 4.089 9 C -0.129 4.129 10 C -0.158 4.158 11 C -0.143 4.143 12 C -0.166 4.166 13 C -0.070 4.070 14 C 0.024 3.976 15 C -0.551 4.551 16 H 0.061 0.939 17 C -0.184 4.184 18 N -0.561 5.561 19 Si 0.775 3.225 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.201 1.201 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.124 0.876 38 H 0.008 0.992 39 H 0.039 0.961 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.133 -11.788 5.000 13.455 hybrid contribution -0.233 1.220 0.012 1.242 sum -4.366 -10.569 5.013 12.486 Atomic orbital electron populations 1.21793 0.94020 1.02250 1.01754 1.21080 0.96596 0.95227 0.97669 1.21804 1.00458 0.96908 1.00864 1.22300 0.95976 1.00509 0.98282 1.20180 0.92765 0.96654 0.88122 0.90611 1.58912 1.67811 1.06083 1.04185 1.19774 1.00585 0.94019 0.94521 1.21125 0.99537 0.93823 0.98418 1.21340 1.01016 1.00661 0.92831 1.21314 1.00409 0.92717 0.99885 1.21140 1.01821 0.96136 0.97505 1.20330 0.96352 0.96562 0.93782 1.18092 0.96520 0.87586 0.95379 1.21199 1.00529 0.92131 1.41223 0.93863 1.25693 0.98643 0.98046 0.95978 1.70069 1.30257 1.06831 1.48951 0.85632 0.80023 0.78507 0.78378 1.19504 1.20375 1.20102 0.91410 0.91572 0.93948 0.89842 0.91738 0.94275 0.95011 0.90879 0.94052 0.83857 0.84088 0.84128 0.83361 0.84173 0.87573 0.99187 0.96137 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.19 71.98 0.66 -2.62 16 2 C -0.09 -2.41 2.79 -10.79 -0.03 -2.44 16 3 C -0.14 -4.92 8.95 71.98 0.64 -4.28 16 4 C -0.13 -4.19 4.08 30.59 0.12 -4.07 16 5 C 0.13 4.85 2.22 44.17 0.10 4.94 16 6 H 0.08 3.45 4.62 -2.39 -0.01 3.44 16 7 N -0.84 -23.84 8.77 -171.82 -1.51 -25.35 16 8 C -0.09 -3.46 5.06 -19.87 -0.10 -3.56 16 9 C -0.11 -3.54 9.27 22.27 0.21 -3.34 16 10 C -0.14 -4.12 10.05 22.27 0.22 -3.90 16 11 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 12 C -0.15 -6.05 9.68 22.27 0.22 -5.83 16 13 C -0.07 -3.17 5.07 -19.87 -0.10 -3.27 16 14 C 0.06 3.28 4.44 29.10 0.13 3.41 16 15 C -0.51 -29.47 8.30 25.60 0.21 -29.26 16 16 H 0.04 2.54 7.74 -2.91 -0.02 2.52 16 17 C 0.02 0.86 5.46 84.66 0.46 1.32 16 18 N -0.92 -54.84 13.29 21.45 0.28 -54.56 16 19 Si 0.95 45.09 29.54 68.60 2.03 47.11 16 20 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.08 1.94 6.65 -2.39 -0.02 1.92 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.04 1.54 6.46 -2.39 -0.02 1.52 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.04 1.59 6.92 -2.39 -0.02 1.57 16 32 H 0.35 8.66 7.44 -89.69 -0.67 7.99 16 33 H 0.34 7.91 7.21 -89.69 -0.65 7.26 16 34 H 0.14 3.60 6.29 -2.91 -0.02 3.58 16 35 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 38 H -0.01 -0.60 8.05 -2.39 -0.02 -0.62 16 39 H 0.02 1.14 5.68 -2.39 -0.01 1.12 16 40 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -64.97 315.92 3.49 -61.48 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.28 Total: 28.07 kcal Atomic # 6 Polarization: -59.72 SS G_CDS: 2.97 Total: -56.75 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -1.22 Total: -79.90 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.97 3.49 -61.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.237 kcal (2) G-P(sol) polarization free energy of solvation -64.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds