Wall clock time and date at job start Mon Mar 30 2020 06:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46482 * 2 1 4 4 N 1.46903 * 109.46693 * 174.68879 * 3 2 1 5 5 C 1.46906 * 110.99462 * 73.35079 * 4 3 2 6 6 C 1.50695 * 109.47363 * 60.90232 * 5 4 3 7 7 C 1.38238 * 119.99682 * 266.88667 * 6 5 4 8 8 C 1.38241 * 119.99676 * 179.76409 * 7 6 5 9 9 C 1.38235 * 120.00106 * 0.50621 * 8 7 6 10 10 C 1.38240 * 119.99927 * 359.74818 * 9 8 7 11 11 C 1.38235 * 120.00239 * 87.15698 * 6 5 4 12 12 C 1.46900 * 111.00254 * 197.29874 * 4 3 2 13 13 H 1.09000 * 109.47592 * 296.05289 * 12 4 3 14 14 C 1.53000 * 109.47389 * 176.05067 * 12 4 3 15 15 C 1.50711 * 109.46743 * 56.04929 * 12 4 3 16 16 H 1.07992 * 119.99675 * 0.02562 * 15 12 4 17 17 C 1.37878 * 119.99923 * 179.97438 * 15 12 4 18 18 N 1.31518 * 120.00019 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99862 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47170 * 60.00338 * 19 17 15 21 21 H 1.48498 * 109.47069 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47113 * 300.00053 * 19 17 15 23 23 H 1.08998 * 109.46551 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47138 * 299.99659 * 1 2 3 25 25 H 1.08998 * 109.47168 * 60.00126 * 1 2 3 26 26 H 1.08998 * 109.47138 * 240.00341 * 2 1 3 27 27 H 1.08998 * 109.47168 * 119.99873 * 2 1 3 28 28 H 1.09010 * 109.47140 * 54.69680 * 3 2 1 29 29 H 1.08993 * 109.47548 * 294.69056 * 3 2 1 30 30 H 1.08998 * 109.47193 * 300.89499 * 5 4 3 31 31 H 1.09007 * 109.46363 * 180.90019 * 5 4 3 32 32 H 1.07997 * 119.99882 * 359.97438 * 7 6 5 33 33 H 1.08000 * 119.99700 * 180.23266 * 8 7 6 34 34 H 1.07995 * 119.99706 * 179.72059 * 9 8 7 35 35 H 1.08003 * 119.99909 * 179.97438 * 10 9 8 36 36 H 1.08000 * 120.00141 * 0.02562 * 11 6 5 37 37 H 1.09000 * 109.46947 * 300.00067 * 14 12 4 38 38 H 1.08996 * 109.47264 * 60.00015 * 14 12 4 39 39 H 1.08999 * 109.46776 * 180.02562 * 14 12 4 40 40 H 0.96999 * 120.00114 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5033 1.4446 0.1282 5 6 4.1418 1.0120 -1.1221 6 6 3.7708 1.9629 -2.2308 7 6 2.6807 1.6930 -3.0369 8 6 2.3374 2.5677 -4.0508 9 6 3.0904 3.7069 -4.2653 10 6 4.1837 3.9741 -3.4626 11 6 4.5239 3.1021 -2.4454 12 6 3.9940 2.7667 0.5398 13 1 3.7689 3.4962 -0.2381 14 6 5.5071 2.7040 0.7578 15 6 3.3180 3.1761 1.8231 16 1 2.5966 2.5197 2.2866 17 6 3.6215 4.3883 2.4058 18 7 4.5005 5.1874 1.8416 19 14 2.7842 4.8954 3.9968 20 1 3.0909 3.9012 5.0563 21 1 3.2800 6.2319 4.4129 22 1 1.3156 4.9566 3.7855 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6010 1.9831 0.8388 29 1 1.7563 1.9282 -0.9336 30 1 3.8016 0.0080 -1.3754 31 1 5.2244 1.0074 -0.9945 32 1 2.0952 0.8005 -2.8723 33 1 1.4835 2.3587 -4.6781 34 1 2.8249 4.3879 -5.0603 35 1 4.7723 4.8639 -3.6305 36 1 5.3784 3.3105 -1.8187 37 1 5.7321 1.9746 1.5358 38 1 5.9959 2.4079 -0.1703 39 1 5.8709 3.6849 1.0637 40 1 4.7137 6.0404 2.2513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263902957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:44 Heat of formation + Delta-G solvation = 6.166628 kcal Electronic energy + Delta-G solvation = -18752.959457 eV Core-core repulsion = 16145.661426 eV Total energy + Delta-G solvation = -2607.298031 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76190 -38.35535 -35.34115 -34.12647 -32.25252 -31.69695 -30.28178 -28.10981 -26.51159 -25.21420 -23.37701 -22.69616 -21.80921 -20.61712 -18.47757 -17.47026 -17.20993 -16.30292 -16.16718 -15.91824 -15.51057 -15.15324 -14.94681 -14.28433 -14.03289 -13.81973 -13.58359 -13.33144 -13.00623 -12.92487 -12.70843 -12.60892 -12.50504 -12.31108 -12.17907 -11.96376 -11.87926 -11.65713 -11.48632 -11.12207 -10.82337 -10.49403 -9.70749 -9.55631 -8.83288 -8.08664 -6.18453 0.51626 0.56363 1.40454 1.41737 1.49041 2.42486 2.93915 3.19490 3.48650 3.99049 4.05179 4.19900 4.23368 4.30921 4.39876 4.43401 4.62672 4.68233 4.76194 4.82057 4.83619 4.95906 5.03920 5.08097 5.14683 5.19212 5.21489 5.22932 5.31058 5.47103 5.49722 5.60259 5.64492 5.66473 5.74729 5.80990 5.89239 6.19671 6.31513 6.48349 6.81336 6.97606 7.49212 8.96629 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017701 B = 0.008656 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.414695 B = 3233.794217 C = 4035.638513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C 0.055 3.945 4 N -0.529 5.529 5 C 0.087 3.913 6 C -0.121 4.121 7 C -0.116 4.116 8 C -0.128 4.128 9 C -0.128 4.128 10 C -0.137 4.137 11 C -0.122 4.122 12 C 0.216 3.784 13 H -0.017 1.017 14 C -0.122 4.122 15 C -0.519 4.519 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.917 5.917 19 Si 0.952 3.048 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.027 0.973 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.133 0.867 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.026 0.974 38 H 0.030 0.970 39 H 0.057 0.943 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.633 -7.073 -10.342 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.073 4.073 4 N -0.251 5.251 5 C -0.041 4.041 6 C -0.123 4.123 7 C -0.135 4.135 8 C -0.146 4.146 9 C -0.147 4.147 10 C -0.155 4.155 11 C -0.141 4.141 12 C 0.110 3.890 13 H 0.000 1.000 14 C -0.180 4.180 15 C -0.557 4.557 16 H 0.072 0.928 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.778 3.222 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.199 1.199 23 H 0.090 0.910 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.410 -7.245 -9.901 13.037 hybrid contribution -0.171 1.400 0.528 1.506 sum -4.580 -5.845 -9.373 11.958 Atomic orbital electron populations 1.21694 0.94767 1.02196 1.01509 1.21445 0.96002 0.95315 1.01869 1.22139 0.88179 0.97372 0.99653 1.62509 1.05867 1.29530 1.27172 1.21351 0.99834 0.96965 0.85949 1.20790 0.96661 0.97470 0.97390 1.21252 0.96422 1.00517 0.95285 1.21445 1.00317 0.94602 0.98238 1.21407 0.95143 0.98085 1.00021 1.21355 0.98673 0.99447 0.96017 1.21244 1.00209 0.95214 0.97421 1.19021 0.92177 0.84316 0.93521 0.99954 1.21691 0.97678 1.00919 0.97705 1.21438 1.23408 1.02327 1.08529 0.92754 1.25633 0.95956 0.96600 1.00403 1.70009 1.34143 1.10723 1.40807 0.85701 0.78871 0.77250 0.80354 1.19809 1.21004 1.19906 0.90989 0.93719 0.92590 0.91456 0.92525 0.92763 0.95492 0.89070 0.91064 0.84888 0.83471 0.83807 0.85571 0.87914 0.95519 0.95098 0.92372 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.11 -3.25 5.90 30.60 0.18 -3.07 16 3 C 0.05 2.13 4.55 86.30 0.39 2.53 16 4 N -0.53 -22.53 4.52 -879.87 -3.98 -26.51 16 5 C 0.09 3.11 5.10 85.55 0.44 3.55 16 6 C -0.12 -4.27 4.07 -19.87 -0.08 -4.36 16 7 C -0.12 -3.46 7.83 22.27 0.17 -3.29 16 8 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 9 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 10 C -0.14 -4.47 10.05 22.27 0.22 -4.25 16 11 C -0.12 -4.59 7.77 22.27 0.17 -4.42 16 12 C 0.22 11.01 1.49 44.17 0.07 11.07 16 13 H -0.02 -0.96 5.95 -2.39 -0.01 -0.97 16 14 C -0.12 -6.05 8.31 71.98 0.60 -5.45 16 15 C -0.52 -28.95 7.69 25.60 0.20 -28.76 16 16 H 0.05 3.04 6.55 -2.91 -0.02 3.02 16 17 C 0.01 0.71 5.30 84.65 0.45 1.16 16 18 N -0.92 -53.35 11.32 21.45 0.24 -53.11 16 19 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.78 6.97 -2.39 -0.02 1.76 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 2.46 5.81 -2.38 -0.01 2.44 16 29 H 0.03 1.06 5.40 -2.39 -0.01 1.04 16 30 H 0.09 2.79 6.77 -2.39 -0.02 2.77 16 31 H 0.07 2.62 6.11 -2.38 -0.01 2.61 16 32 H 0.13 3.41 8.00 -2.91 -0.02 3.39 16 33 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.10 4.21 6.06 -2.91 -0.02 4.20 16 37 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.03 1.35 4.98 -2.39 -0.01 1.34 16 39 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 40 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -61.92 306.64 3.27 -58.64 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.01 Total: 19.07 kcal Atomic # 6 Polarization: -48.62 SS G_CDS: 3.97 Total: -44.65 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -3.73 Total: -79.61 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -61.92 3.27 -58.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263902957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.812 kcal (2) G-P(sol) polarization free energy of solvation -61.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds