Wall clock time and date at job start Mon Mar 30 2020 06:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47419 * 2 1 4 4 N 1.46900 * 109.47548 * 181.65809 * 3 2 1 5 5 C 1.46906 * 110.99425 * 72.47806 * 4 3 2 6 6 C 1.50704 * 109.46768 * 199.24319 * 5 4 3 7 7 C 1.38241 * 119.99905 * 264.06074 * 6 5 4 8 8 C 1.38227 * 119.99981 * 179.76840 * 7 6 5 9 9 C 1.38247 * 119.99919 * 0.50463 * 8 7 6 10 10 C 1.38234 * 119.99867 * 359.75156 * 9 8 7 11 11 C 1.38230 * 120.00179 * 84.33657 * 6 5 4 12 12 C 1.46898 * 111.00319 * 196.43204 * 4 3 2 13 13 H 1.08995 * 109.47191 * 186.04640 * 12 4 3 14 14 C 1.53003 * 109.47245 * 306.04668 * 12 4 3 15 15 C 1.50697 * 109.47170 * 66.04941 * 12 4 3 16 16 H 1.08008 * 119.99821 * 359.97438 * 15 12 4 17 17 C 1.37870 * 120.00440 * 180.02562 * 15 12 4 18 18 N 1.31525 * 119.99721 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 120.00288 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.47213 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47300 * 299.99483 * 19 17 15 22 22 H 1.48502 * 109.47337 * 59.99643 * 19 17 15 23 23 H 1.09002 * 109.47804 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46966 * 299.99697 * 1 2 3 25 25 H 1.08996 * 109.47693 * 59.99482 * 1 2 3 26 26 H 1.09000 * 109.46938 * 239.99994 * 2 1 3 27 27 H 1.09003 * 109.47380 * 120.00303 * 2 1 3 28 28 H 1.09005 * 109.47226 * 61.66019 * 3 2 1 29 29 H 1.09001 * 109.47550 * 301.66408 * 3 2 1 30 30 H 1.08997 * 109.47082 * 319.24440 * 5 4 3 31 31 H 1.09002 * 109.47077 * 79.24856 * 5 4 3 32 32 H 1.08001 * 119.99906 * 0.02562 * 7 6 5 33 33 H 1.07996 * 120.00231 * 180.23308 * 8 7 6 34 34 H 1.07999 * 119.99981 * 179.72534 * 9 8 7 35 35 H 1.07995 * 120.00099 * 179.97438 * 10 9 8 36 36 H 1.08002 * 120.00007 * 0.02562 * 11 6 5 37 37 H 1.08998 * 109.47297 * 300.00107 * 14 12 4 38 38 H 1.09003 * 109.46423 * 59.99784 * 14 12 4 39 39 H 1.08993 * 109.47109 * 179.97438 * 14 12 4 40 40 H 0.96994 * 119.99729 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5085 1.4427 -0.0401 5 6 3.9989 1.0425 -1.3658 6 6 5.4348 0.5982 -1.2570 7 6 6.4564 1.4880 -1.5324 8 6 7.7735 1.0819 -1.4281 9 6 8.0691 -0.2170 -1.0584 10 6 7.0476 -1.1082 -0.7881 11 6 5.7304 -0.7006 -0.8874 12 6 4.0455 2.7543 0.3460 13 1 5.1263 2.7602 0.2051 14 6 3.4117 3.8413 -0.5245 15 6 3.7265 3.0212 1.7945 16 1 3.1790 2.2897 2.3705 17 6 4.1324 4.1995 2.3841 18 7 4.7985 5.0905 1.6825 19 14 3.7363 4.5305 4.1793 20 1 4.2793 5.8565 4.5697 21 1 2.2638 4.5223 4.3710 22 1 4.3514 3.4759 5.0246 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7012 1.9477 0.9045 29 1 1.6526 1.9649 -0.8747 30 1 3.3918 0.2203 -1.7447 31 1 3.9313 1.8891 -2.0490 32 1 6.2254 2.5016 -1.8251 33 1 8.5716 1.7780 -1.6396 34 1 9.0982 -0.5356 -0.9811 35 1 7.2784 -2.1230 -0.4997 36 1 4.9323 -1.3971 -0.6770 37 1 3.6425 3.6483 -1.5721 38 1 2.3309 3.8353 -0.3835 39 1 3.8099 4.8145 -0.2377 40 1 5.0844 5.9193 2.0974 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263902959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:47 Heat of formation + Delta-G solvation = 18.253464 kcal Electronic energy + Delta-G solvation = -18415.186992 eV Core-core repulsion = 15808.413085 eV Total energy + Delta-G solvation = -2606.773906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.01172 -37.19795 -33.48975 -32.57659 -30.88914 -30.41855 -28.34868 -25.96218 -25.13358 -23.76193 -22.09190 -20.98886 -20.90039 -18.82414 -16.31747 -16.21473 -15.23827 -14.87033 -14.46893 -14.46118 -14.27947 -13.67524 -13.03748 -12.90913 -12.70575 -12.43645 -12.04880 -11.86069 -11.66822 -11.41778 -11.23431 -10.87685 -10.80054 -10.66860 -10.48107 -10.38823 -10.31597 -10.19792 -9.90152 -9.60505 -8.86634 -8.44569 -8.31779 -8.20772 -7.10465 -5.96771 -3.99318 1.83988 1.88533 3.34695 3.38811 3.42125 4.22467 4.46063 5.06651 5.28848 5.32972 5.35528 5.43663 5.46905 5.54433 5.63521 5.76823 5.89545 5.97869 6.07685 6.08080 6.18211 6.28914 6.30918 6.44772 6.50270 6.52519 6.70722 6.77440 6.88940 6.91124 6.92048 6.94826 7.15209 7.21183 7.46766 7.53484 7.74814 7.89048 8.21748 8.43820 8.64732 9.06202 9.64941 11.10412 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.008708 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.863969 B = 3214.754243 C = 4379.325513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.063 3.937 4 N -0.525 5.525 5 C 0.083 3.917 6 C -0.055 4.055 7 C -0.104 4.104 8 C -0.122 4.122 9 C -0.132 4.132 10 C -0.128 4.128 11 C -0.102 4.102 12 C 0.209 3.791 13 H 0.046 0.954 14 C -0.173 4.173 15 C -0.496 4.496 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.289 1.289 21 H -0.279 1.279 22 H -0.277 1.277 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.020 0.980 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.006 0.994 38 H 0.029 0.971 39 H 0.088 0.912 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 -9.088 -6.608 11.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.066 4.066 4 N -0.248 5.248 5 C -0.045 4.045 6 C -0.056 4.056 7 C -0.123 4.123 8 C -0.141 4.141 9 C -0.150 4.150 10 C -0.146 4.146 11 C -0.120 4.120 12 C 0.103 3.897 13 H 0.064 0.936 14 C -0.232 4.232 15 C -0.534 4.534 16 H 0.079 0.921 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.215 1.215 21 H -0.204 1.204 22 H -0.203 1.203 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.025 0.975 38 H 0.048 0.952 39 H 0.106 0.894 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.050 -9.238 -6.234 11.145 hybrid contribution -0.402 0.975 0.475 1.157 sum -0.453 -8.263 -5.760 10.082 Atomic orbital electron populations 1.21730 0.96657 1.00713 1.01549 1.21580 0.94371 0.98236 1.01690 1.22006 0.88707 0.94750 1.01097 1.62329 1.06858 1.32844 1.22816 1.21082 0.91617 0.99032 0.92729 1.19846 0.95395 0.93389 0.96971 1.21114 0.92507 0.99141 0.99528 1.21050 0.96413 0.95970 1.00621 1.21000 0.98619 0.94075 1.01311 1.21023 0.93074 0.99242 1.01276 1.20921 0.96071 0.95904 0.99132 1.19345 0.95354 0.80843 0.94141 0.93650 1.22422 0.99468 1.05471 0.95820 1.21066 1.35292 1.02145 0.94944 0.92137 1.24905 0.95345 0.96182 0.97838 1.69874 1.38809 1.08838 1.35932 0.86622 0.78510 0.77231 0.85394 1.21457 1.20432 1.20296 0.93386 0.92760 0.93309 0.92996 0.91638 0.89701 0.96211 0.91452 0.94388 0.86328 0.86664 0.86912 0.86817 0.86536 0.97497 0.95226 0.89369 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.15 0.37 -1.60 16 2 C -0.12 -1.89 6.03 -26.73 -0.16 -2.05 16 3 C 0.06 1.20 3.64 -3.82 -0.01 1.19 16 4 N -0.53 -11.11 4.32 -229.47 -0.99 -12.10 16 5 C 0.08 1.53 4.85 -4.97 -0.02 1.51 16 6 C -0.06 -1.00 5.01 -104.62 -0.52 -1.53 16 7 C -0.10 -1.88 8.40 -39.58 -0.33 -2.22 16 8 C -0.12 -1.97 10.05 -39.58 -0.40 -2.37 16 9 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 10 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 11 C -0.10 -1.67 9.72 -39.59 -0.38 -2.06 16 12 C 0.21 5.20 2.22 -68.86 -0.15 5.05 16 13 H 0.05 1.25 6.33 -51.93 -0.33 0.92 16 14 C -0.17 -4.15 8.29 37.16 0.31 -3.84 16 15 C -0.50 -13.58 7.73 -34.44 -0.27 -13.84 16 16 H 0.06 1.67 7.26 -52.48 -0.38 1.29 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 18 N -0.89 -25.51 11.32 55.43 0.63 -24.89 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.76 6.52 -51.93 -0.34 0.43 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.82 6.58 -51.93 -0.34 1.48 16 29 H 0.02 0.37 7.16 -51.93 -0.37 0.00 16 30 H 0.07 1.10 6.24 -51.93 -0.32 0.78 16 31 H 0.04 0.72 6.09 -51.93 -0.32 0.40 16 32 H 0.12 2.18 8.01 -52.49 -0.42 1.76 16 33 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.01 0.14 6.46 -51.93 -0.34 -0.20 16 38 H 0.03 0.69 6.70 -51.93 -0.35 0.34 16 39 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 314.29 15.07 4.74 4.74 Total: -1.00 -28.50 314.29 -9.46 -37.96 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.34 Total: 2.65 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -2.47 Total: -24.91 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.36 Total: -36.99 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.50 -9.46 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263902959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.211 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds