Wall clock time and date at job start Mon Mar 30 2020 06:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47419 * 2 1 4 4 N 1.46900 * 109.47548 * 181.65809 * 3 2 1 5 5 C 1.46906 * 110.99425 * 72.47806 * 4 3 2 6 6 C 1.50704 * 109.46768 * 199.24319 * 5 4 3 7 7 C 1.38241 * 119.99905 * 264.06074 * 6 5 4 8 8 C 1.38227 * 119.99981 * 179.76840 * 7 6 5 9 9 C 1.38247 * 119.99919 * 0.50463 * 8 7 6 10 10 C 1.38234 * 119.99867 * 359.75156 * 9 8 7 11 11 C 1.38230 * 120.00179 * 84.33657 * 6 5 4 12 12 C 1.46898 * 111.00319 * 196.43204 * 4 3 2 13 13 H 1.08995 * 109.47191 * 186.04640 * 12 4 3 14 14 C 1.53003 * 109.47245 * 306.04668 * 12 4 3 15 15 C 1.50697 * 109.47170 * 66.04941 * 12 4 3 16 16 H 1.08008 * 119.99821 * 359.97438 * 15 12 4 17 17 C 1.37870 * 120.00440 * 180.02562 * 15 12 4 18 18 N 1.31525 * 119.99721 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 120.00288 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.47213 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47300 * 299.99483 * 19 17 15 22 22 H 1.48502 * 109.47337 * 59.99643 * 19 17 15 23 23 H 1.09002 * 109.47804 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46966 * 299.99697 * 1 2 3 25 25 H 1.08996 * 109.47693 * 59.99482 * 1 2 3 26 26 H 1.09000 * 109.46938 * 239.99994 * 2 1 3 27 27 H 1.09003 * 109.47380 * 120.00303 * 2 1 3 28 28 H 1.09005 * 109.47226 * 61.66019 * 3 2 1 29 29 H 1.09001 * 109.47550 * 301.66408 * 3 2 1 30 30 H 1.08997 * 109.47082 * 319.24440 * 5 4 3 31 31 H 1.09002 * 109.47077 * 79.24856 * 5 4 3 32 32 H 1.08001 * 119.99906 * 0.02562 * 7 6 5 33 33 H 1.07996 * 120.00231 * 180.23308 * 8 7 6 34 34 H 1.07999 * 119.99981 * 179.72534 * 9 8 7 35 35 H 1.07995 * 120.00099 * 179.97438 * 10 9 8 36 36 H 1.08002 * 120.00007 * 0.02562 * 11 6 5 37 37 H 1.08998 * 109.47297 * 300.00107 * 14 12 4 38 38 H 1.09003 * 109.46423 * 59.99784 * 14 12 4 39 39 H 1.08993 * 109.47109 * 179.97438 * 14 12 4 40 40 H 0.96994 * 119.99729 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5085 1.4427 -0.0401 5 6 3.9989 1.0425 -1.3658 6 6 5.4348 0.5982 -1.2570 7 6 6.4564 1.4880 -1.5324 8 6 7.7735 1.0819 -1.4281 9 6 8.0691 -0.2170 -1.0584 10 6 7.0476 -1.1082 -0.7881 11 6 5.7304 -0.7006 -0.8874 12 6 4.0455 2.7543 0.3460 13 1 5.1263 2.7602 0.2051 14 6 3.4117 3.8413 -0.5245 15 6 3.7265 3.0212 1.7945 16 1 3.1790 2.2897 2.3705 17 6 4.1324 4.1995 2.3841 18 7 4.7985 5.0905 1.6825 19 14 3.7363 4.5305 4.1793 20 1 4.2793 5.8565 4.5697 21 1 2.2638 4.5223 4.3710 22 1 4.3514 3.4759 5.0246 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7012 1.9477 0.9045 29 1 1.6526 1.9649 -0.8747 30 1 3.3918 0.2203 -1.7447 31 1 3.9313 1.8891 -2.0490 32 1 6.2254 2.5016 -1.8251 33 1 8.5716 1.7780 -1.6396 34 1 9.0982 -0.5356 -0.9811 35 1 7.2784 -2.1230 -0.4997 36 1 4.9323 -1.3971 -0.6770 37 1 3.6425 3.6483 -1.5721 38 1 2.3309 3.8353 -0.3835 39 1 3.8099 4.8145 -0.2377 40 1 5.0844 5.9193 2.0974 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263902959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:47 Heat of formation + Delta-G solvation = 3.399550 kcal Electronic energy + Delta-G solvation = -18415.831106 eV Core-core repulsion = 15808.413085 eV Total energy + Delta-G solvation = -2607.418020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38497 -38.74468 -35.23872 -34.09937 -32.45397 -31.66159 -30.07641 -27.53443 -26.99647 -25.34762 -23.34812 -22.50665 -22.24128 -20.50983 -18.25749 -17.55262 -16.97817 -16.26651 -16.11064 -16.00185 -15.57859 -15.32129 -14.51347 -14.23559 -14.14094 -13.86520 -13.67209 -13.36532 -13.19658 -13.01936 -12.69904 -12.56732 -12.53778 -12.40989 -12.13434 -11.92710 -11.83318 -11.73918 -11.49143 -11.17922 -10.88866 -10.44938 -9.68266 -9.51933 -8.79958 -8.08449 -6.17836 0.57324 0.62687 1.41124 1.42673 1.49960 2.43288 2.94145 3.20611 3.54893 4.02062 4.06714 4.19119 4.26382 4.34997 4.36600 4.47000 4.57145 4.64903 4.73312 4.77526 4.81139 4.86638 4.91710 5.02650 5.04082 5.20030 5.23286 5.26857 5.27358 5.41693 5.51882 5.58459 5.67804 5.70396 5.74782 5.78935 5.91539 6.23664 6.28203 6.56713 6.78981 6.95993 7.50435 8.97340 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.008708 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.863969 B = 3214.754243 C = 4379.325513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.064 3.936 4 N -0.532 5.532 5 C 0.088 3.912 6 C -0.079 4.079 7 C -0.130 4.130 8 C -0.133 4.133 9 C -0.130 4.130 10 C -0.126 4.126 11 C -0.111 4.111 12 C 0.218 3.782 13 H 0.015 0.985 14 C -0.158 4.158 15 C -0.510 4.510 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.954 3.046 20 H -0.285 1.285 21 H -0.271 1.271 22 H -0.275 1.275 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.020 0.980 30 H 0.091 0.909 31 H 0.027 0.973 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.130 0.870 37 H 0.021 0.979 38 H 0.029 0.971 39 H 0.060 0.940 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -11.112 -6.423 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.064 4.064 4 N -0.255 5.255 5 C -0.039 4.039 6 C -0.079 4.079 7 C -0.148 4.148 8 C -0.151 4.151 9 C -0.148 4.148 10 C -0.144 4.144 11 C -0.129 4.129 12 C 0.110 3.890 13 H 0.033 0.967 14 C -0.217 4.217 15 C -0.549 4.549 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.780 3.220 20 H -0.210 1.210 21 H -0.197 1.197 22 H -0.200 1.200 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.109 0.891 31 H 0.045 0.955 32 H 0.118 0.882 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.148 0.852 37 H 0.040 0.960 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.146 -11.276 -6.058 12.801 hybrid contribution -0.327 1.564 0.374 1.641 sum -0.472 -9.712 -5.684 11.263 Atomic orbital electron populations 1.21696 0.94585 1.02275 1.01623 1.21492 0.96083 0.95377 1.01952 1.22017 0.87538 0.97152 0.99650 1.62253 1.08004 1.30451 1.24817 1.21099 0.92591 0.99297 0.90944 1.19923 0.94982 0.94457 0.98555 1.21146 0.93907 0.98594 1.01198 1.21325 0.95931 0.97296 1.00524 1.21413 1.00416 0.93233 0.99719 1.21442 0.92315 1.00790 0.99858 1.21159 0.97507 0.95317 0.98943 1.19033 0.93756 0.82923 0.93259 0.96686 1.22217 0.99085 1.03791 0.96644 1.21337 1.35101 1.02105 0.96321 0.92942 1.25642 0.95297 0.96069 1.01695 1.70008 1.39556 1.09082 1.37376 0.85680 0.78568 0.77056 0.80733 1.21046 1.19658 1.20043 0.91054 0.93358 0.92636 0.91563 0.92435 0.92507 0.96158 0.89076 0.95496 0.88245 0.85135 0.83657 0.83528 0.85169 0.95965 0.95183 0.92135 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.91 71.98 0.71 -2.78 16 2 C -0.11 -3.30 6.03 30.59 0.18 -3.11 16 3 C 0.06 2.46 3.64 86.30 0.31 2.77 16 4 N -0.53 -22.71 4.32 -879.90 -3.80 -26.51 16 5 C 0.09 3.23 4.85 85.56 0.42 3.65 16 6 C -0.08 -2.84 5.01 -19.86 -0.10 -2.94 16 7 C -0.13 -4.80 8.40 22.27 0.19 -4.61 16 8 C -0.13 -4.19 10.05 22.27 0.22 -3.96 16 9 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 10 C -0.13 -3.41 10.05 22.27 0.22 -3.18 16 11 C -0.11 -3.46 9.72 22.27 0.22 -3.24 16 12 C 0.22 11.13 2.22 44.17 0.10 11.23 16 13 H 0.02 0.87 6.33 -2.39 -0.02 0.86 16 14 C -0.16 -7.84 8.29 71.98 0.60 -7.24 16 15 C -0.51 -28.56 7.73 25.60 0.20 -28.36 16 16 H 0.05 2.95 7.26 -2.91 -0.02 2.93 16 17 C 0.01 0.63 5.30 84.65 0.45 1.08 16 18 N -0.92 -53.73 11.32 21.45 0.24 -53.49 16 19 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.78 6.52 -2.39 -0.02 1.76 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 2.47 6.58 -2.38 -0.02 2.46 16 29 H 0.02 0.76 7.16 -2.39 -0.02 0.74 16 30 H 0.09 2.84 6.24 -2.39 -0.01 2.83 16 31 H 0.03 1.03 6.09 -2.39 -0.01 1.02 16 32 H 0.10 3.92 8.01 -2.91 -0.02 3.89 16 33 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 36 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 37 H 0.02 0.98 6.46 -2.39 -0.02 0.97 16 38 H 0.03 1.43 6.70 -2.39 -0.02 1.41 16 39 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 40 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -62.13 314.29 3.41 -58.72 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 1.00 Total: 18.61 kcal Atomic # 6 Polarization: -47.95 SS G_CDS: 3.94 Total: -44.00 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -3.56 Total: -79.99 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -62.13 3.41 -58.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263902959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.122 kcal (2) G-P(sol) polarization free energy of solvation -62.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds