Wall clock time and date at job start Mon Mar 30 2020 05:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.38311 * 119.92595 * 265.00210 * 3 2 1 5 5 C 1.38085 * 120.07602 * 180.02562 * 4 3 2 6 6 C 1.38926 * 119.92194 * 359.97438 * 5 4 3 7 7 N 1.39674 * 120.07488 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99607 * 0.02562 * 7 6 5 9 9 H 1.08998 * 109.47409 * 34.99542 * 8 7 6 10 10 C 1.50702 * 109.46923 * 154.99962 * 8 7 6 11 11 H 1.08001 * 120.00291 * 359.97438 * 10 8 7 12 12 C 1.37879 * 119.99702 * 179.97438 * 10 8 7 13 13 N 1.31516 * 120.00517 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 119.99792 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47412 * 90.00256 * 14 12 10 16 16 H 1.48503 * 109.47123 * 210.00040 * 14 12 10 17 17 H 1.48500 * 109.47468 * 329.99903 * 14 12 10 18 18 C 1.53006 * 109.47144 * 274.99630 * 8 7 6 19 19 C 1.53004 * 109.46762 * 65.00227 * 18 8 7 20 20 C 1.38895 * 119.85445 * 0.02562 * 6 5 4 21 21 C 1.38125 * 119.92070 * 359.72445 * 20 6 5 22 22 C 1.50699 * 119.95939 * 180.27590 * 21 20 6 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 26 26 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 27 27 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 28 28 H 1.07998 * 119.95900 * 0.02562 * 4 3 2 29 29 H 1.07995 * 120.03874 * 179.97438 * 5 4 3 30 30 H 0.97000 * 120.00738 * 179.97438 * 7 6 5 31 31 H 0.96992 * 120.00373 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.47134 * 184.99835 * 18 8 7 33 33 H 1.08999 * 109.47382 * 305.00375 * 18 8 7 34 34 H 1.09006 * 109.46676 * 180.02562 * 19 18 8 35 35 H 1.08996 * 109.46976 * 299.99704 * 19 18 8 36 36 H 1.08999 * 109.47051 * 59.99945 * 19 18 8 37 37 H 1.08000 * 120.03489 * 180.02562 * 20 6 5 38 38 H 1.09005 * 109.46964 * 270.27210 * 22 21 20 39 39 H 1.08999 * 109.47319 * 30.27003 * 22 21 20 40 40 H 1.09002 * 109.47521 * 150.27790 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0366 -1.1941 5 6 2.8218 3.3382 -1.1977 6 6 2.9551 4.0294 0.0000 7 7 3.4216 5.3460 0.0002 8 6 3.7705 5.9995 -1.2637 9 1 3.0947 5.6584 -2.0479 10 6 3.6458 7.4933 -1.1079 11 1 3.3372 7.9137 -0.1622 12 6 3.9259 8.3232 -2.1728 13 7 4.3022 7.8113 -3.3243 14 14 3.7721 10.1748 -1.9794 15 1 5.0696 10.7343 -1.5227 16 1 3.4042 10.7799 -3.2847 17 1 2.7203 10.4823 -0.9773 18 6 5.2101 5.6445 -1.6411 19 6 5.3085 4.1435 -1.9210 20 6 2.6243 3.4081 1.1974 21 6 2.1589 2.1077 1.1932 22 6 1.7939 1.4348 2.4913 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.2565 1.4987 -2.1248 29 1 3.0784 3.8182 -2.1304 30 1 3.5139 5.8278 0.8369 31 1 4.4995 8.3952 -4.0733 32 1 5.4994 6.2001 -2.5331 33 1 5.8762 5.9052 -0.8187 34 1 6.3343 3.8905 -2.1894 35 1 5.0192 3.5879 -1.0290 36 1 4.6425 3.8828 -2.7434 37 1 2.7264 3.9429 2.1301 38 1 2.6708 0.9314 2.8987 39 1 1.4415 2.1826 3.2017 40 1 1.0056 0.7035 2.3126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300843870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:34 Heat of formation + Delta-G solvation = 4.647951 kcal Electronic energy + Delta-G solvation = -18118.973369 eV Core-core repulsion = 15511.609483 eV Total energy + Delta-G solvation = -2607.363886 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.32719 -36.55863 -33.74170 -32.18167 -31.79822 -30.93051 -28.28207 -26.57563 -26.04130 -23.24487 -22.55894 -21.64146 -20.43153 -18.73237 -17.19052 -15.83485 -15.49559 -14.94344 -14.70200 -13.98929 -13.91233 -13.56361 -13.08230 -12.89198 -12.79816 -12.53688 -12.25581 -12.00186 -11.87472 -11.72355 -11.29053 -11.20547 -11.01403 -10.89112 -10.81730 -10.46193 -10.36870 -10.14572 -10.07596 -9.61761 -9.13310 -8.88684 -8.44228 -8.07033 -6.36634 -6.15927 -4.24242 2.05022 2.26981 3.22414 3.29554 3.32306 4.26250 4.46234 4.63057 5.15439 5.17814 5.20687 5.41805 5.44544 5.60334 5.71028 5.83380 5.85980 5.98175 6.00136 6.05837 6.06804 6.25089 6.29018 6.37104 6.43306 6.52801 6.60066 6.65779 6.94220 6.99750 7.07330 7.14294 7.25145 7.31443 7.46316 7.61350 7.71774 7.85965 8.10635 8.41310 8.74534 8.94129 9.42857 10.89188 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.005170 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.723002 B = 5414.719827 C = 5630.652995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 C -0.170 4.170 4 C -0.071 4.071 5 C -0.202 4.202 6 C 0.238 3.762 7 N -0.726 5.726 8 C 0.273 3.727 9 H 0.040 0.960 10 C -0.530 4.530 11 H 0.060 0.940 12 C 0.066 3.934 13 N -0.885 5.885 14 Si 0.900 3.100 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.132 4.132 19 C -0.151 4.151 20 C -0.219 4.219 21 C -0.040 4.040 22 C -0.113 4.113 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.132 0.868 30 H 0.388 0.612 31 H 0.264 0.736 32 H 0.098 0.902 33 H 0.033 0.967 34 H 0.027 0.973 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 -11.650 6.087 13.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.173 4.173 4 C -0.090 4.090 5 C -0.224 4.224 6 C 0.129 3.871 7 N -0.347 5.347 8 C 0.170 3.830 9 H 0.057 0.943 10 C -0.568 4.568 11 H 0.078 0.922 12 C -0.136 4.136 13 N -0.523 5.523 14 Si 0.728 3.272 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.171 4.171 19 C -0.208 4.208 20 C -0.243 4.243 21 C -0.041 4.041 22 C -0.170 4.170 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.127 0.873 29 H 0.150 0.850 30 H 0.221 0.779 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.412 -11.449 5.679 13.228 hybrid contribution 0.095 1.324 0.293 1.359 sum -3.317 -10.125 5.972 12.214 Atomic orbital electron populations 1.21789 0.95933 1.00581 1.02095 1.20297 0.95235 0.93698 1.01472 1.19192 1.08910 0.96369 0.92799 1.20646 0.97321 0.94360 0.96631 1.21041 1.08058 0.95564 0.97768 1.17982 0.90199 0.85656 0.93279 1.45530 1.68784 1.09795 1.10623 1.18720 0.91865 0.91342 0.81023 0.94283 1.21237 1.46819 0.90573 0.98212 0.92195 1.24870 0.94653 0.99126 0.94992 1.69866 1.45311 1.35231 1.01931 0.86464 0.78440 0.84752 0.77580 1.20561 1.21044 1.19880 1.22023 0.99212 0.93389 1.02522 1.22202 0.98962 0.99195 1.00476 1.20325 1.11686 0.96065 0.96222 1.19247 0.97375 0.93346 0.94122 1.20811 1.01145 1.00213 0.94838 0.93372 0.92745 0.92742 0.92053 0.92154 0.87288 0.85030 0.77914 0.92586 0.88345 0.94805 0.95362 0.93173 0.93427 0.87294 0.91869 0.92246 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.70 37.16 0.36 -1.26 16 2 C -0.07 -0.85 5.36 -27.88 -0.15 -1.00 16 3 C -0.17 -2.62 5.14 -104.59 -0.54 -3.16 16 4 C -0.07 -1.18 9.67 -39.61 -0.38 -1.57 16 5 C -0.20 -3.87 6.72 -39.38 -0.26 -4.14 16 6 C 0.24 4.66 5.49 -83.79 -0.46 4.20 16 7 N -0.73 -15.30 5.18 -53.28 -0.28 -15.57 16 8 C 0.27 6.61 2.20 -69.08 -0.15 6.46 16 9 H 0.04 1.04 6.48 -51.93 -0.34 0.71 16 10 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 13 N -0.89 -24.21 11.29 55.43 0.63 -23.58 16 14 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 19 C -0.15 -3.09 8.22 37.16 0.31 -2.78 16 20 C -0.22 -3.82 9.55 -39.38 -0.38 -4.19 16 21 C -0.04 -0.63 5.88 -104.66 -0.62 -1.24 16 22 C -0.11 -1.37 9.21 36.01 0.33 -1.04 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.61 6.88 -51.93 -0.36 0.25 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.69 7.00 -51.93 -0.36 0.32 16 27 H 0.06 0.69 8.05 -51.93 -0.42 0.28 16 28 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.13 2.71 4.01 -52.49 -0.21 2.50 16 30 H 0.39 7.72 8.55 -40.82 -0.35 7.38 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 1.01 5.39 -51.93 -0.28 0.73 16 36 H 0.05 0.96 6.35 -51.93 -0.33 0.63 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 40 H 0.06 0.71 5.39 -51.93 -0.28 0.43 16 LS Contribution 308.93 15.07 4.66 4.66 Total: -1.00 -26.80 308.93 -8.65 -35.45 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.15 Total: 9.02 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -2.48 Total: -25.55 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.35 Total: -39.15 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.80 -8.65 -35.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300843870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.095 kcal (2) G-P(sol) polarization free energy of solvation -26.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds