Wall clock time and date at job start Mon Mar 30 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.38311 * 119.92595 * 265.00210 * 3 2 1 5 5 C 1.38085 * 120.07602 * 180.02562 * 4 3 2 6 6 C 1.38926 * 119.92194 * 359.97438 * 5 4 3 7 7 N 1.39674 * 120.07488 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99607 * 0.02562 * 7 6 5 9 9 H 1.08998 * 109.47409 * 34.99542 * 8 7 6 10 10 C 1.50702 * 109.46923 * 154.99962 * 8 7 6 11 11 H 1.08001 * 120.00291 * 359.97438 * 10 8 7 12 12 C 1.37879 * 119.99702 * 179.97438 * 10 8 7 13 13 N 1.31516 * 120.00517 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 119.99792 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47412 * 90.00256 * 14 12 10 16 16 H 1.48503 * 109.47123 * 210.00040 * 14 12 10 17 17 H 1.48500 * 109.47468 * 329.99903 * 14 12 10 18 18 C 1.53006 * 109.47144 * 274.99630 * 8 7 6 19 19 C 1.53004 * 109.46762 * 65.00227 * 18 8 7 20 20 C 1.38895 * 119.85445 * 0.02562 * 6 5 4 21 21 C 1.38125 * 119.92070 * 359.72445 * 20 6 5 22 22 C 1.50699 * 119.95939 * 180.27590 * 21 20 6 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 26 26 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 27 27 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 28 28 H 1.07998 * 119.95900 * 0.02562 * 4 3 2 29 29 H 1.07995 * 120.03874 * 179.97438 * 5 4 3 30 30 H 0.97000 * 120.00738 * 179.97438 * 7 6 5 31 31 H 0.96992 * 120.00373 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.47134 * 184.99835 * 18 8 7 33 33 H 1.08999 * 109.47382 * 305.00375 * 18 8 7 34 34 H 1.09006 * 109.46676 * 180.02562 * 19 18 8 35 35 H 1.08996 * 109.46976 * 299.99704 * 19 18 8 36 36 H 1.08999 * 109.47051 * 59.99945 * 19 18 8 37 37 H 1.08000 * 120.03489 * 180.02562 * 20 6 5 38 38 H 1.09005 * 109.46964 * 270.27210 * 22 21 20 39 39 H 1.08999 * 109.47319 * 30.27003 * 22 21 20 40 40 H 1.09002 * 109.47521 * 150.27790 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0366 -1.1941 5 6 2.8218 3.3382 -1.1977 6 6 2.9551 4.0294 0.0000 7 7 3.4216 5.3460 0.0002 8 6 3.7705 5.9995 -1.2637 9 1 3.0947 5.6584 -2.0479 10 6 3.6458 7.4933 -1.1079 11 1 3.3372 7.9137 -0.1622 12 6 3.9259 8.3232 -2.1728 13 7 4.3022 7.8113 -3.3243 14 14 3.7721 10.1748 -1.9794 15 1 5.0696 10.7343 -1.5227 16 1 3.4042 10.7799 -3.2847 17 1 2.7203 10.4823 -0.9773 18 6 5.2101 5.6445 -1.6411 19 6 5.3085 4.1435 -1.9210 20 6 2.6243 3.4081 1.1974 21 6 2.1589 2.1077 1.1932 22 6 1.7939 1.4348 2.4913 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.2565 1.4987 -2.1248 29 1 3.0784 3.8182 -2.1304 30 1 3.5139 5.8278 0.8369 31 1 4.4995 8.3952 -4.0733 32 1 5.4994 6.2001 -2.5331 33 1 5.8762 5.9052 -0.8187 34 1 6.3343 3.8905 -2.1894 35 1 5.0192 3.5879 -1.0290 36 1 4.6425 3.8828 -2.7434 37 1 2.7264 3.9429 2.1301 38 1 2.6708 0.9314 2.8987 39 1 1.4415 2.1826 3.2017 40 1 1.0056 0.7035 2.3126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300843870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:33 Heat of formation + Delta-G solvation = -8.376410 kcal Electronic energy + Delta-G solvation = -18119.538148 eV Core-core repulsion = 15511.609483 eV Total energy + Delta-G solvation = -2607.928664 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.70365 -38.12784 -35.30617 -33.73783 -33.15389 -32.50208 -29.80712 -27.96668 -27.50380 -24.94877 -23.89184 -22.99324 -21.95155 -20.25684 -18.99690 -17.39749 -17.14615 -16.50440 -16.04476 -15.62848 -15.25851 -14.90130 -14.52689 -14.28131 -14.12562 -13.74301 -13.58454 -13.49734 -13.16764 -13.07880 -12.87190 -12.75801 -12.66688 -12.48499 -12.17303 -11.94746 -11.91962 -11.61433 -11.49916 -11.29852 -10.96312 -10.62286 -10.28390 -9.40631 -8.19386 -7.87706 -6.33603 0.69702 0.91831 1.40688 1.41504 1.51531 2.36648 3.00473 3.09073 3.13057 4.06968 4.11585 4.27310 4.39424 4.46045 4.56776 4.58592 4.69416 4.70527 4.77436 4.84818 4.88873 4.94142 5.01669 5.09653 5.15605 5.20676 5.24674 5.30857 5.39950 5.42110 5.52724 5.57740 5.66578 5.72116 5.81578 5.87773 6.02735 6.16051 6.31909 6.58851 6.90627 7.26322 7.39677 8.86341 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.005170 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.723002 B = 5414.719827 C = 5630.652995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 C -0.163 4.163 4 C -0.077 4.077 5 C -0.221 4.221 6 C 0.211 3.789 7 N -0.733 5.733 8 C 0.285 3.715 9 H 0.006 0.994 10 C -0.550 4.550 11 H 0.058 0.942 12 C 0.020 3.980 13 N -0.911 5.911 14 Si 0.964 3.036 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.270 1.270 18 C -0.125 4.125 19 C -0.136 4.136 20 C -0.222 4.222 21 C -0.043 4.043 22 C -0.111 4.111 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.391 0.609 31 H 0.265 0.735 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.219 -13.320 7.594 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.165 4.165 4 C -0.096 4.096 5 C -0.244 4.244 6 C 0.105 3.895 7 N -0.358 5.358 8 C 0.181 3.819 9 H 0.024 0.976 10 C -0.588 4.588 11 H 0.076 0.924 12 C -0.180 4.180 13 N -0.550 5.550 14 Si 0.789 3.211 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.195 1.195 18 C -0.164 4.164 19 C -0.193 4.193 20 C -0.246 4.246 21 C -0.044 4.044 22 C -0.167 4.167 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.144 0.856 29 H 0.126 0.874 30 H 0.224 0.776 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.139 0.861 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.120 -13.158 7.205 15.557 hybrid contribution 0.247 1.703 -0.149 1.727 sum -3.873 -11.455 7.056 14.000 Atomic orbital electron populations 1.21765 0.94874 1.01985 1.01562 1.20381 0.96018 0.91395 1.02849 1.19657 1.06827 0.97962 0.92065 1.20899 0.96908 0.93528 0.98256 1.20972 1.09772 0.96785 0.96838 1.18197 0.91729 0.85165 0.94396 1.45206 1.70510 1.10672 1.09390 1.18321 0.91399 0.90570 0.81628 0.97636 1.21581 1.46924 0.92008 0.98288 0.92371 1.25651 0.94306 1.03365 0.94686 1.69994 1.45860 1.36613 1.02513 0.85471 0.78529 0.79582 0.77513 1.19920 1.20743 1.19513 1.21853 0.98617 0.95072 1.00864 1.22032 0.99804 0.96965 1.00511 1.20566 1.11241 0.96977 0.95779 1.19716 0.95965 0.92682 0.96008 1.20872 1.02326 1.00640 0.92910 0.91047 0.92758 0.93856 0.90266 0.91280 0.85649 0.87406 0.77562 0.92546 0.91061 0.95371 0.93799 0.92843 0.93735 0.86149 0.90335 0.91436 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.70 71.98 0.70 -2.00 16 2 C -0.07 -1.44 5.36 29.85 0.16 -1.28 16 3 C -0.16 -4.64 5.14 -19.84 -0.10 -4.74 16 4 C -0.08 -2.53 9.67 22.25 0.22 -2.31 16 5 C -0.22 -8.68 6.72 22.40 0.15 -8.53 16 6 C 0.21 8.40 5.49 38.21 0.21 8.61 16 7 N -0.73 -31.95 5.18 -322.49 -1.67 -33.62 16 8 C 0.28 14.42 2.20 44.25 0.10 14.52 16 9 H 0.01 0.33 6.48 -2.39 -0.02 0.32 16 10 C -0.55 -29.84 8.73 25.60 0.22 -29.61 16 11 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 12 C 0.02 1.09 5.29 84.65 0.45 1.54 16 13 N -0.91 -51.34 11.29 21.45 0.24 -51.10 16 14 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 18 C -0.12 -6.07 5.45 30.60 0.17 -5.90 16 19 C -0.14 -5.68 8.22 71.98 0.59 -5.09 16 20 C -0.22 -7.51 9.55 22.40 0.21 -7.30 16 21 C -0.04 -1.24 5.88 -19.89 -0.12 -1.36 16 22 C -0.11 -2.27 9.21 71.24 0.66 -1.62 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 1.02 6.88 -2.39 -0.02 1.00 16 25 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.08 1.41 7.00 -2.39 -0.02 1.39 16 27 H 0.07 1.35 8.05 -2.39 -0.02 1.33 16 28 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 29 H 0.11 4.71 4.01 -2.91 -0.01 4.69 16 30 H 0.39 16.03 8.55 -92.71 -0.79 15.24 16 31 H 0.27 14.18 8.31 -92.71 -0.77 13.40 16 32 H 0.07 3.86 5.95 -2.39 -0.01 3.84 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.05 2.19 5.39 -2.39 -0.01 2.17 16 36 H 0.04 1.86 6.35 -2.39 -0.02 1.84 16 37 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 38 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 40 H 0.08 1.42 5.39 -2.39 -0.01 1.41 16 Total: -1.00 -58.72 308.93 4.45 -54.27 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.24 Total: 30.69 kcal Atomic # 6 Polarization: -48.69 SS G_CDS: 3.61 Total: -45.07 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -1.43 Total: -84.72 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -58.72 4.45 -54.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300843870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.894 kcal (2) G-P(sol) polarization free energy of solvation -58.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds