Wall clock time and date at job start Mon Mar 30 2020 05:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47225 * 2 1 4 4 C 1.38305 * 119.92310 * 265.02154 * 3 2 1 5 5 C 1.38082 * 120.07654 * 179.72851 * 4 3 2 6 6 C 1.38937 * 119.92386 * 0.48012 * 5 4 3 7 7 N 1.39673 * 120.07808 * 179.79344 * 6 5 4 8 8 C 1.46498 * 119.99598 * 354.85443 * 7 6 5 9 9 H 1.08995 * 109.47704 * 37.99448 * 8 7 6 10 10 C 1.50696 * 109.46719 * 277.98856 * 8 7 6 11 11 H 1.08004 * 120.00541 * 0.02562 * 10 8 7 12 12 C 1.37886 * 119.99827 * 179.72925 * 10 8 7 13 13 N 1.31509 * 119.99660 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99976 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47406 * 89.99823 * 14 12 10 16 16 H 1.48506 * 109.46770 * 209.99970 * 14 12 10 17 17 H 1.48507 * 109.47260 * 329.99477 * 14 12 10 18 18 C 1.52999 * 109.46738 * 157.99481 * 8 7 6 19 19 C 1.52998 * 109.47064 * 294.85414 * 18 8 7 20 20 C 1.38894 * 119.84751 * 359.51829 * 6 5 4 21 21 C 1.38135 * 119.92589 * 0.25635 * 20 6 5 22 22 C 1.50700 * 119.96105 * 180.02562 * 21 20 6 23 23 H 1.08998 * 109.47737 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46888 * 300.00679 * 1 2 3 25 25 H 1.09002 * 109.47033 * 59.99549 * 1 2 3 26 26 H 1.09001 * 109.46888 * 239.99321 * 2 1 3 27 27 H 1.08998 * 109.46731 * 120.00069 * 2 1 3 28 28 H 1.07999 * 119.96271 * 0.02562 * 4 3 2 29 29 H 1.07999 * 120.04359 * 180.27544 * 5 4 3 30 30 H 0.97004 * 119.99987 * 174.84886 * 7 6 5 31 31 H 0.97005 * 120.00122 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47769 * 54.85449 * 18 8 7 33 33 H 1.09006 * 109.47031 * 174.85306 * 18 8 7 34 34 H 1.09005 * 109.47279 * 185.07134 * 19 18 8 35 35 H 1.09001 * 109.47353 * 305.06633 * 19 18 8 36 36 H 1.09000 * 109.47519 * 65.07138 * 19 18 8 37 37 H 1.07997 * 120.04235 * 180.22781 * 20 6 5 38 38 H 1.08997 * 109.47328 * 89.99433 * 22 21 20 39 39 H 1.09001 * 109.46239 * 209.99626 * 22 21 20 40 40 H 1.08994 * 109.46993 * 329.99112 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3604 2.0366 -1.1942 5 6 2.8157 3.3402 -1.1983 6 6 2.9536 4.0300 -0.0002 7 7 3.4179 5.3473 -0.0004 8 6 3.8667 5.9655 -1.2504 9 1 3.2227 5.6415 -2.0678 10 6 5.2870 5.5498 -1.5346 11 1 5.8036 4.8906 -0.8527 12 6 5.9251 6.0060 -2.6686 13 7 5.2940 6.8036 -3.5023 14 14 7.6854 5.4901 -3.0214 15 1 7.6837 4.2417 -3.8256 16 1 8.3742 6.5659 -3.7787 17 1 8.3979 5.2527 -1.7402 18 6 3.7976 7.4884 -1.1196 19 6 2.3388 7.9207 -0.9588 20 6 2.6232 3.4086 1.1972 21 6 2.1639 2.1058 1.1937 22 6 1.8046 1.4310 2.4924 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.2558 1.4988 -2.1249 29 1 3.0675 3.8220 -2.1315 30 1 3.4431 5.8528 0.8272 31 1 5.7429 7.1250 -4.2999 32 1 4.3686 7.8045 -0.2465 33 1 4.2167 7.9492 -2.0141 34 1 2.2806 9.0092 -0.9560 35 1 1.7499 7.5276 -1.7874 36 1 1.9466 7.5336 -0.0184 37 1 2.7256 3.9431 2.1300 38 1 0.7527 1.6090 2.7155 39 1 1.9814 0.3590 2.4057 40 1 2.4200 1.8370 3.2952 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300843873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:36 Heat of formation + Delta-G solvation = -1.646533 kcal Electronic energy + Delta-G solvation = -18006.013245 eV Core-core repulsion = 15398.376410 eV Total energy + Delta-G solvation = -2607.636835 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.11192 -36.41131 -33.82906 -32.07803 -31.82888 -30.90313 -28.06349 -26.33974 -26.20872 -23.30911 -22.57420 -21.55358 -20.18483 -18.99964 -16.52711 -16.27333 -15.53245 -14.92007 -14.63273 -13.85917 -13.69133 -13.43758 -13.08433 -12.90927 -12.68755 -12.51432 -12.38278 -11.98808 -11.83390 -11.74739 -11.46009 -11.28201 -10.93465 -10.83066 -10.73026 -10.38293 -10.28185 -9.99753 -9.91758 -9.70844 -9.62530 -8.66003 -8.43173 -8.02797 -6.43771 -5.99692 -4.15656 2.13986 2.35634 3.27123 3.33885 3.38088 4.33983 4.57174 4.64608 5.20213 5.21334 5.26215 5.46374 5.51734 5.62987 5.75393 5.85334 5.96062 6.04058 6.07813 6.11210 6.14082 6.14975 6.17384 6.37180 6.42113 6.47793 6.64365 6.71526 6.80406 6.95555 7.05962 7.16419 7.25811 7.39189 7.48733 7.66177 7.71740 7.90977 8.27228 8.39819 8.83729 8.93883 9.51899 10.95364 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.006114 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.899210 B = 4578.896366 C = 5141.644625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C -0.170 4.170 4 C -0.070 4.070 5 C -0.188 4.188 6 C 0.244 3.756 7 N -0.730 5.730 8 C 0.273 3.727 9 H 0.039 0.961 10 C -0.522 4.522 11 H 0.058 0.942 12 C 0.063 3.937 13 N -0.892 5.892 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.128 4.128 19 C -0.144 4.144 20 C -0.220 4.220 21 C -0.043 4.043 22 C -0.111 4.111 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.129 0.871 30 H 0.382 0.618 31 H 0.262 0.738 32 H 0.036 0.964 33 H 0.105 0.895 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.036 0.964 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 -7.416 7.003 12.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.173 4.173 4 C -0.089 4.089 5 C -0.211 4.211 6 C 0.136 3.864 7 N -0.352 5.352 8 C 0.171 3.829 9 H 0.057 0.943 10 C -0.561 4.561 11 H 0.076 0.924 12 C -0.138 4.138 13 N -0.531 5.531 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.167 4.167 19 C -0.202 4.202 20 C -0.243 4.243 21 C -0.044 4.044 22 C -0.167 4.167 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.127 0.873 29 H 0.147 0.853 30 H 0.215 0.785 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.123 0.877 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.264 -7.183 6.612 12.168 hybrid contribution 1.121 0.088 -0.002 1.125 sum -6.142 -7.095 6.610 11.479 Atomic orbital electron populations 1.21748 0.95953 1.00497 1.01976 1.20330 0.95221 0.93805 1.01495 1.19184 1.08876 0.96368 0.92830 1.20670 0.97298 0.94294 0.96591 1.20822 1.07207 0.95331 0.97712 1.17864 0.89871 0.85560 0.93120 1.45383 1.68083 1.10165 1.11579 1.18742 0.94125 0.88886 0.81161 0.94342 1.21600 0.98339 1.28966 1.07196 0.92362 1.24910 0.98102 0.94936 0.95884 1.69850 1.37076 1.33505 1.12635 0.86556 0.84654 0.78246 0.78356 1.20603 1.21210 1.19989 1.21849 0.93422 0.98481 1.02943 1.21802 0.99278 0.98973 1.00147 1.20306 1.12023 0.95876 0.96095 1.19221 0.97709 0.93370 0.94064 1.20783 1.00951 1.00209 0.94807 0.93440 0.92889 0.92836 0.92200 0.91901 0.87321 0.85320 0.78536 0.92760 0.94492 0.87663 0.94645 0.93605 0.94490 0.87466 0.91926 0.91761 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.89 37.16 0.37 -1.28 16 2 C -0.07 -0.92 5.56 -27.88 -0.15 -1.07 16 3 C -0.17 -2.76 5.14 -104.59 -0.54 -3.30 16 4 C -0.07 -1.25 9.67 -39.61 -0.38 -1.63 16 5 C -0.19 -3.89 9.18 -39.38 -0.36 -4.25 16 6 C 0.24 4.97 6.59 -83.78 -0.55 4.42 16 7 N -0.73 -15.21 4.81 -53.29 -0.26 -15.47 16 8 C 0.27 6.51 1.68 -69.09 -0.12 6.39 16 9 H 0.04 1.01 6.45 -51.93 -0.33 0.68 16 10 C -0.52 -13.89 8.70 -34.44 -0.30 -14.18 16 11 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 12 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 13 N -0.89 -24.38 11.31 55.43 0.63 -23.75 16 14 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.13 -2.87 5.30 -26.73 -0.14 -3.02 16 19 C -0.14 -2.75 9.74 37.16 0.36 -2.39 16 20 C -0.22 -3.93 9.55 -39.38 -0.38 -4.30 16 21 C -0.04 -0.70 5.88 -104.65 -0.62 -1.31 16 22 C -0.11 -1.39 9.37 36.01 0.34 -1.05 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.60 7.91 -51.93 -0.41 0.19 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 27 H 0.06 0.74 6.15 -51.93 -0.32 0.42 16 28 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.13 2.93 6.21 -52.49 -0.33 2.60 16 30 H 0.38 7.25 8.59 -40.82 -0.35 6.90 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.11 2.65 5.97 -51.93 -0.31 2.34 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.73 6.02 -51.93 -0.31 0.41 16 40 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -27.05 320.95 -8.92 -35.97 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.54 Total: 7.70 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -2.56 Total: -25.39 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.37 Total: -39.22 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.05 -8.92 -35.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300843873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.323 kcal (2) G-P(sol) polarization free energy of solvation -27.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds