Wall clock time and date at job start Mon Mar 30 2020 05:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47225 * 2 1 4 4 C 1.38305 * 119.92310 * 265.02154 * 3 2 1 5 5 C 1.38082 * 120.07654 * 179.72851 * 4 3 2 6 6 C 1.38937 * 119.92386 * 0.48012 * 5 4 3 7 7 N 1.39673 * 120.07808 * 179.79344 * 6 5 4 8 8 C 1.46498 * 119.99598 * 354.85443 * 7 6 5 9 9 H 1.08995 * 109.47704 * 37.99448 * 8 7 6 10 10 C 1.50696 * 109.46719 * 277.98856 * 8 7 6 11 11 H 1.08004 * 120.00541 * 0.02562 * 10 8 7 12 12 C 1.37886 * 119.99827 * 179.72925 * 10 8 7 13 13 N 1.31509 * 119.99660 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99976 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47406 * 89.99823 * 14 12 10 16 16 H 1.48506 * 109.46770 * 209.99970 * 14 12 10 17 17 H 1.48507 * 109.47260 * 329.99477 * 14 12 10 18 18 C 1.52999 * 109.46738 * 157.99481 * 8 7 6 19 19 C 1.52998 * 109.47064 * 294.85414 * 18 8 7 20 20 C 1.38894 * 119.84751 * 359.51829 * 6 5 4 21 21 C 1.38135 * 119.92589 * 0.25635 * 20 6 5 22 22 C 1.50700 * 119.96105 * 180.02562 * 21 20 6 23 23 H 1.08998 * 109.47737 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46888 * 300.00679 * 1 2 3 25 25 H 1.09002 * 109.47033 * 59.99549 * 1 2 3 26 26 H 1.09001 * 109.46888 * 239.99321 * 2 1 3 27 27 H 1.08998 * 109.46731 * 120.00069 * 2 1 3 28 28 H 1.07999 * 119.96271 * 0.02562 * 4 3 2 29 29 H 1.07999 * 120.04359 * 180.27544 * 5 4 3 30 30 H 0.97004 * 119.99987 * 174.84886 * 7 6 5 31 31 H 0.97005 * 120.00122 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47769 * 54.85449 * 18 8 7 33 33 H 1.09006 * 109.47031 * 174.85306 * 18 8 7 34 34 H 1.09005 * 109.47279 * 185.07134 * 19 18 8 35 35 H 1.09001 * 109.47353 * 305.06633 * 19 18 8 36 36 H 1.09000 * 109.47519 * 65.07138 * 19 18 8 37 37 H 1.07997 * 120.04235 * 180.22781 * 20 6 5 38 38 H 1.08997 * 109.47328 * 89.99433 * 22 21 20 39 39 H 1.09001 * 109.46239 * 209.99626 * 22 21 20 40 40 H 1.08994 * 109.46993 * 329.99112 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3604 2.0366 -1.1942 5 6 2.8157 3.3402 -1.1983 6 6 2.9536 4.0300 -0.0002 7 7 3.4179 5.3473 -0.0004 8 6 3.8667 5.9655 -1.2504 9 1 3.2227 5.6415 -2.0678 10 6 5.2870 5.5498 -1.5346 11 1 5.8036 4.8906 -0.8527 12 6 5.9251 6.0060 -2.6686 13 7 5.2940 6.8036 -3.5023 14 14 7.6854 5.4901 -3.0214 15 1 7.6837 4.2417 -3.8256 16 1 8.3742 6.5659 -3.7787 17 1 8.3979 5.2527 -1.7402 18 6 3.7976 7.4884 -1.1196 19 6 2.3388 7.9207 -0.9588 20 6 2.6232 3.4086 1.1972 21 6 2.1639 2.1058 1.1937 22 6 1.8046 1.4310 2.4924 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.2558 1.4988 -2.1249 29 1 3.0675 3.8220 -2.1315 30 1 3.4431 5.8528 0.8272 31 1 5.7429 7.1250 -4.2999 32 1 4.3686 7.8045 -0.2465 33 1 4.2167 7.9492 -2.0141 34 1 2.2806 9.0092 -0.9560 35 1 1.7499 7.5276 -1.7874 36 1 1.9466 7.5336 -0.0184 37 1 2.7256 3.9431 2.1300 38 1 0.7527 1.6090 2.7155 39 1 1.9814 0.3590 2.4057 40 1 2.4200 1.8370 3.2952 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300843873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:36 Heat of formation + Delta-G solvation = -14.534136 kcal Electronic energy + Delta-G solvation = -18006.572094 eV Core-core repulsion = 15398.376410 eV Total energy + Delta-G solvation = -2608.195683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52506 -38.04153 -35.35966 -33.84499 -33.12532 -32.41322 -29.58435 -27.99085 -27.52620 -24.99728 -23.93682 -22.93654 -21.76893 -20.52975 -18.51986 -17.84011 -17.12476 -16.46420 -16.09524 -15.43775 -15.02140 -14.89980 -14.65194 -14.23157 -14.07453 -13.91469 -13.53122 -13.40110 -13.24868 -13.15135 -12.95491 -12.77030 -12.66878 -12.60987 -12.14363 -11.83132 -11.73025 -11.61546 -11.54159 -11.36100 -11.26018 -10.49426 -10.30685 -9.43156 -8.25864 -7.79649 -6.27411 0.70534 0.93721 1.36715 1.38701 1.47929 2.38464 2.99962 3.12313 3.15025 4.08531 4.10835 4.30566 4.36130 4.45089 4.54371 4.60772 4.67196 4.68597 4.71716 4.86665 4.88900 5.01131 5.03704 5.09394 5.17355 5.19570 5.25249 5.27963 5.32383 5.43646 5.52355 5.56479 5.69658 5.73175 5.82050 5.95293 6.03628 6.28064 6.28778 6.61843 6.93799 7.27262 7.45370 8.88502 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.006114 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.899210 B = 4578.896366 C = 5141.644625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C -0.164 4.164 4 C -0.078 4.078 5 C -0.218 4.218 6 C 0.218 3.782 7 N -0.732 5.732 8 C 0.285 3.715 9 H 0.005 0.995 10 C -0.535 4.535 11 H 0.041 0.959 12 C 0.021 3.979 13 N -0.912 5.912 14 Si 0.949 3.051 15 H -0.280 1.280 16 H -0.278 1.278 17 H -0.274 1.274 18 C -0.122 4.122 19 C -0.133 4.133 20 C -0.220 4.220 21 C -0.044 4.044 22 C -0.108 4.108 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.092 0.908 30 H 0.391 0.609 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.033 0.967 36 H 0.052 0.948 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 -9.078 8.952 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.167 4.167 4 C -0.096 4.096 5 C -0.241 4.241 6 C 0.112 3.888 7 N -0.357 5.357 8 C 0.181 3.819 9 H 0.023 0.977 10 C -0.574 4.574 11 H 0.059 0.941 12 C -0.178 4.178 13 N -0.552 5.552 14 Si 0.776 3.224 15 H -0.206 1.206 16 H -0.203 1.203 17 H -0.199 1.199 18 C -0.161 4.161 19 C -0.190 4.190 20 C -0.243 4.243 21 C -0.044 4.044 22 C -0.164 4.164 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.139 0.861 29 H 0.111 0.889 30 H 0.225 0.775 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.984 -8.865 8.579 14.695 hybrid contribution 1.280 0.482 -0.579 1.486 sum -6.704 -8.383 7.999 13.387 Atomic orbital electron populations 1.21716 0.94573 1.01967 1.01598 1.20416 0.96295 0.91351 1.02730 1.19643 1.06945 0.98050 0.92018 1.20881 0.97106 0.93379 0.98283 1.20709 1.09838 0.96878 0.96700 1.18102 0.91223 0.85482 0.94012 1.45057 1.69180 1.10725 1.10764 1.18355 0.92018 0.89862 0.81648 0.97741 1.21792 0.99716 1.28726 1.07141 0.94104 1.25561 1.01423 0.95064 0.95788 1.69961 1.38258 1.34109 1.12852 0.85693 0.80752 0.77947 0.78056 1.20596 1.20315 1.19918 1.21673 0.95668 0.97162 1.01618 1.21667 0.96566 1.00335 1.00456 1.20580 1.11344 0.96733 0.95670 1.19739 0.95985 0.92754 0.95956 1.20851 1.02141 1.00825 0.92624 0.91083 0.92602 0.93941 0.91711 0.89995 0.86146 0.88934 0.77511 0.92698 0.94087 0.90557 0.92448 0.94739 0.92916 0.85683 0.90183 0.90038 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.89 71.98 0.71 -2.04 16 2 C -0.07 -1.60 5.56 29.85 0.17 -1.43 16 3 C -0.16 -5.03 5.14 -19.84 -0.10 -5.14 16 4 C -0.08 -2.82 9.67 22.25 0.22 -2.60 16 5 C -0.22 -9.49 9.18 22.40 0.21 -9.29 16 6 C 0.22 9.08 6.59 38.22 0.25 9.33 16 7 N -0.73 -31.42 4.81 -322.52 -1.55 -32.97 16 8 C 0.28 14.22 1.68 44.24 0.07 14.29 16 9 H 0.00 0.27 6.45 -2.39 -0.02 0.26 16 10 C -0.53 -29.60 8.70 25.60 0.22 -29.38 16 11 H 0.04 2.35 7.81 -2.91 -0.02 2.32 16 12 C 0.02 1.17 5.29 84.66 0.45 1.61 16 13 N -0.91 -51.55 11.31 21.45 0.24 -51.31 16 14 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 18 C -0.12 -5.63 5.30 30.59 0.16 -5.47 16 19 C -0.13 -5.04 9.74 71.98 0.70 -4.34 16 20 C -0.22 -7.62 9.55 22.40 0.21 -7.41 16 21 C -0.04 -1.31 5.88 -19.88 -0.12 -1.43 16 22 C -0.11 -2.26 9.37 71.24 0.67 -1.59 16 23 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 1.06 7.91 -2.39 -0.02 1.04 16 25 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 1.41 8.05 -2.39 -0.02 1.39 16 27 H 0.08 1.57 6.15 -2.39 -0.01 1.56 16 28 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 29 H 0.09 4.62 6.21 -2.91 -0.02 4.60 16 30 H 0.39 14.94 8.59 -92.71 -0.80 14.14 16 31 H 0.26 14.20 8.31 -92.70 -0.77 13.42 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 3.97 5.97 -2.38 -0.01 3.96 16 34 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.81 7.90 -2.39 -0.02 1.80 16 37 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.45 6.02 -2.39 -0.01 1.43 16 40 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 Total: -1.00 -60.34 320.95 4.75 -55.59 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.21 Total: 27.34 kcal Atomic # 6 Polarization: -48.70 SS G_CDS: 3.82 Total: -44.88 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -1.31 Total: -84.28 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -60.34 4.75 -55.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300843873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.054 kcal (2) G-P(sol) polarization free energy of solvation -60.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds