Wall clock time and date at job start Mon Mar 30 2020 05:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47028 * 2 1 4 4 C 1.38123 * 119.96293 * 265.26692 * 3 2 1 5 5 C 1.38889 * 119.92391 * 180.27304 * 4 3 2 6 6 N 1.39673 * 120.07595 * 179.75388 * 5 4 3 7 7 C 1.46505 * 120.00346 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46488 * 35.00133 * 7 6 5 9 9 C 1.50701 * 109.47044 * 154.99892 * 7 6 5 10 10 H 1.07990 * 120.00005 * 0.02562 * 9 7 6 11 11 C 1.37876 * 119.99528 * 180.02562 * 9 7 6 12 12 N 1.31509 * 120.00305 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 119.99711 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47337 * 89.99919 * 13 11 9 15 15 H 1.48504 * 109.47330 * 209.99692 * 13 11 9 16 16 H 1.48504 * 109.47564 * 329.99923 * 13 11 9 17 17 C 1.53001 * 109.46956 * 275.00291 * 7 6 5 18 18 C 1.52992 * 109.47144 * 64.99769 * 17 7 6 19 19 C 1.38934 * 119.85367 * 359.73045 * 5 4 3 20 20 C 1.38086 * 119.91816 * 359.97438 * 19 5 4 21 21 C 1.38262 * 119.96229 * 85.00049 * 3 2 1 22 22 C 1.50703 * 119.92567 * 359.97438 * 21 3 2 23 23 H 1.09005 * 109.46886 * 60.00158 * 1 2 3 24 24 H 1.09001 * 109.47123 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47459 * 300.00134 * 1 2 3 26 26 H 1.09003 * 109.47459 * 239.99866 * 2 1 3 27 27 H 1.09005 * 109.46886 * 119.99842 * 2 1 3 28 28 H 1.08003 * 120.03723 * 0.02562 * 4 3 2 29 29 H 0.97007 * 120.00161 * 359.97438 * 6 5 4 30 30 H 0.97003 * 120.00425 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.46473 * 184.99953 * 17 7 6 32 32 H 1.09004 * 109.47157 * 304.99449 * 17 7 6 33 33 H 1.08999 * 109.47585 * 299.99503 * 18 17 7 34 34 H 1.09004 * 109.47355 * 59.99801 * 18 17 7 35 35 H 1.09004 * 109.47155 * 179.97438 * 18 17 7 36 36 H 1.07994 * 120.04136 * 180.02562 * 19 5 4 37 37 H 1.08000 * 119.95470 * 180.02562 * 20 19 5 38 38 H 1.09002 * 109.47152 * 269.72798 * 22 21 3 39 39 H 1.09001 * 109.46980 * 149.72899 * 22 21 3 40 40 H 1.09004 * 109.47113 * 29.72880 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3553 2.0383 -1.1925 5 6 2.8235 3.3459 -1.1911 6 7 3.1560 3.9716 -2.3948 7 6 3.6493 5.3511 -2.3915 8 1 4.2569 5.5175 -1.5020 9 6 4.4854 5.5886 -3.6226 10 1 4.6340 4.7918 -4.3363 11 6 5.0604 6.8231 -3.8377 12 7 4.8789 7.7935 -2.9689 13 14 6.0962 7.1177 -5.3641 14 1 5.2277 7.6068 -6.4649 15 1 7.1379 8.1335 -5.0670 16 1 6.7464 5.8471 -5.7740 17 6 2.4627 6.3170 -2.3866 18 6 1.6845 6.1622 -1.0786 19 6 2.9601 4.0303 0.0102 20 6 2.6295 3.4090 1.1982 21 6 2.1640 2.1067 1.1933 22 6 1.8043 1.4319 2.4919 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2477 1.5036 -2.1247 29 1 3.0603 3.4928 -3.2330 30 1 5.2838 8.6619 -3.1200 31 1 2.8271 7.3405 -2.4738 32 1 1.8074 6.0918 -3.2281 33 1 1.3200 5.1387 -0.9914 34 1 2.3397 6.3874 -0.2371 35 1 0.8393 6.8506 -1.0749 36 1 3.3235 5.0473 0.0148 37 1 2.7350 3.9406 2.1324 38 1 0.7538 1.6149 2.7177 39 1 2.4236 1.8338 3.2939 40 1 1.9755 0.3590 2.4035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300870137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:39 Heat of formation + Delta-G solvation = 5.506771 kcal Electronic energy + Delta-G solvation = -18145.584471 eV Core-core repulsion = 15538.257826 eV Total energy + Delta-G solvation = -2607.326645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.33196 -36.54089 -33.71247 -32.72689 -31.49414 -30.24652 -28.90618 -27.15626 -24.88323 -23.61900 -22.84603 -21.47708 -20.46964 -18.70204 -17.19506 -15.83468 -15.51226 -14.75813 -14.72341 -14.13950 -13.85778 -13.44075 -13.23214 -13.11180 -12.76539 -12.63106 -12.28914 -11.96055 -11.67578 -11.57810 -11.28537 -11.20604 -11.11206 -10.94404 -10.80304 -10.52123 -10.36436 -10.14497 -10.05061 -9.61384 -9.13100 -8.88208 -8.44029 -8.09433 -6.35831 -6.15835 -4.24144 2.04633 2.27271 3.22483 3.29629 3.32389 4.26315 4.46696 4.62564 5.08467 5.15567 5.18439 5.42710 5.51744 5.58779 5.68365 5.74776 5.90362 5.97216 6.01668 6.05226 6.13255 6.24233 6.27119 6.33229 6.42574 6.52256 6.61326 6.64319 6.94101 6.99573 7.07268 7.14077 7.25117 7.31352 7.46390 7.61402 7.71777 7.85963 8.10661 8.41416 8.74674 8.94229 9.42959 10.89261 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035683 B = 0.005271 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.502433 B = 5311.123004 C = 5609.334816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.038 4.038 4 C -0.216 4.216 5 C 0.237 3.763 6 N -0.726 5.726 7 C 0.273 3.727 8 H 0.039 0.961 9 C -0.530 4.530 10 H 0.060 0.940 11 C 0.066 3.934 12 N -0.885 5.885 13 Si 0.900 3.100 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.132 4.132 18 C -0.151 4.151 19 C -0.200 4.200 20 C -0.074 4.074 21 C -0.173 4.173 22 C -0.098 4.098 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.388 0.612 30 H 0.264 0.736 31 H 0.098 0.902 32 H 0.033 0.967 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.027 0.973 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.360 -10.185 6.591 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.039 4.039 4 C -0.240 4.240 5 C 0.128 3.872 6 N -0.347 5.347 7 C 0.171 3.829 8 H 0.057 0.943 9 C -0.568 4.568 10 H 0.078 0.922 11 C -0.136 4.136 12 N -0.523 5.523 13 Si 0.728 3.272 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.171 4.171 18 C -0.208 4.208 19 C -0.223 4.223 20 C -0.093 4.093 21 C -0.175 4.175 22 C -0.155 4.155 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.127 0.873 29 H 0.221 0.779 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.150 0.850 37 H 0.127 0.873 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.211 -9.741 6.601 13.306 hybrid contribution 0.525 0.211 -1.222 1.347 sum -5.686 -9.530 5.379 12.332 Atomic orbital electron populations 1.21703 0.95229 1.00891 1.02255 1.20521 0.95827 0.93705 1.02031 1.19229 0.97562 0.94788 0.92333 1.20316 1.11371 0.94880 0.97389 1.17979 0.90766 0.90884 0.87603 1.45526 1.69147 1.15925 1.04146 1.18719 0.90895 0.75584 0.97748 0.94285 1.21232 1.31080 0.97542 1.06971 0.92197 1.24867 0.96219 0.95752 0.96804 1.69867 1.44009 1.03216 1.35244 0.86465 0.79936 0.78087 0.82751 1.20561 1.21047 1.19882 1.22020 0.96764 1.04379 0.93967 1.22201 0.99001 1.00071 0.99565 1.21050 1.08534 1.01610 0.91077 1.20646 0.97725 0.93859 0.97028 1.19208 1.08820 0.95332 0.94149 1.20609 1.00446 0.99729 0.94721 0.92664 0.93080 0.92596 0.91780 0.91230 0.87312 0.77919 0.92590 0.88357 0.94810 0.93171 0.93437 0.95364 0.85020 0.87252 0.92745 0.92816 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 37.15 0.37 -1.21 16 2 C -0.08 -1.03 5.56 -27.89 -0.15 -1.18 16 3 C -0.04 -0.60 5.13 -104.65 -0.54 -1.13 16 4 C -0.22 -3.75 9.53 -39.38 -0.38 -4.13 16 5 C 0.24 4.63 5.49 -83.79 -0.46 4.17 16 6 N -0.73 -15.29 5.18 -53.28 -0.28 -15.56 16 7 C 0.27 6.61 2.20 -69.08 -0.15 6.46 16 8 H 0.04 1.04 6.48 -51.93 -0.34 0.71 16 9 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 10 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 11 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 12 N -0.89 -24.20 11.29 55.43 0.63 -23.58 16 13 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 18 C -0.15 -3.09 8.22 37.15 0.31 -2.78 16 19 C -0.20 -3.85 6.72 -39.38 -0.26 -4.11 16 20 C -0.07 -1.24 9.69 -39.61 -0.38 -1.62 16 21 C -0.17 -2.68 5.88 -104.59 -0.62 -3.29 16 22 C -0.10 -1.20 9.37 36.01 0.34 -0.86 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.62 7.91 -51.93 -0.41 0.21 16 26 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 27 H 0.07 0.77 6.15 -51.93 -0.32 0.45 16 28 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.39 7.72 8.55 -40.82 -0.35 7.37 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.05 1.01 5.39 -51.93 -0.28 0.73 16 34 H 0.05 0.95 6.35 -51.93 -0.33 0.62 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.13 2.71 4.01 -52.49 -0.21 2.50 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 40 H 0.06 0.64 6.01 -51.93 -0.31 0.32 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -26.80 310.29 -8.66 -35.46 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.20 Total: 8.93 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -2.47 Total: -25.50 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.35 Total: -39.14 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.80 -8.66 -35.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300870137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.967 kcal (2) G-P(sol) polarization free energy of solvation -26.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds