Wall clock time and date at job start Mon Mar 30 2020 05:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47028 * 2 1 4 4 C 1.38123 * 119.96293 * 265.26692 * 3 2 1 5 5 C 1.38889 * 119.92391 * 180.27304 * 4 3 2 6 6 N 1.39673 * 120.07595 * 179.75388 * 5 4 3 7 7 C 1.46505 * 120.00346 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46488 * 35.00133 * 7 6 5 9 9 C 1.50701 * 109.47044 * 154.99892 * 7 6 5 10 10 H 1.07990 * 120.00005 * 0.02562 * 9 7 6 11 11 C 1.37876 * 119.99528 * 180.02562 * 9 7 6 12 12 N 1.31509 * 120.00305 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 119.99711 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47337 * 89.99919 * 13 11 9 15 15 H 1.48504 * 109.47330 * 209.99692 * 13 11 9 16 16 H 1.48504 * 109.47564 * 329.99923 * 13 11 9 17 17 C 1.53001 * 109.46956 * 275.00291 * 7 6 5 18 18 C 1.52992 * 109.47144 * 64.99769 * 17 7 6 19 19 C 1.38934 * 119.85367 * 359.73045 * 5 4 3 20 20 C 1.38086 * 119.91816 * 359.97438 * 19 5 4 21 21 C 1.38262 * 119.96229 * 85.00049 * 3 2 1 22 22 C 1.50703 * 119.92567 * 359.97438 * 21 3 2 23 23 H 1.09005 * 109.46886 * 60.00158 * 1 2 3 24 24 H 1.09001 * 109.47123 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47459 * 300.00134 * 1 2 3 26 26 H 1.09003 * 109.47459 * 239.99866 * 2 1 3 27 27 H 1.09005 * 109.46886 * 119.99842 * 2 1 3 28 28 H 1.08003 * 120.03723 * 0.02562 * 4 3 2 29 29 H 0.97007 * 120.00161 * 359.97438 * 6 5 4 30 30 H 0.97003 * 120.00425 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.46473 * 184.99953 * 17 7 6 32 32 H 1.09004 * 109.47157 * 304.99449 * 17 7 6 33 33 H 1.08999 * 109.47585 * 299.99503 * 18 17 7 34 34 H 1.09004 * 109.47355 * 59.99801 * 18 17 7 35 35 H 1.09004 * 109.47155 * 179.97438 * 18 17 7 36 36 H 1.07994 * 120.04136 * 180.02562 * 19 5 4 37 37 H 1.08000 * 119.95470 * 180.02562 * 20 19 5 38 38 H 1.09002 * 109.47152 * 269.72798 * 22 21 3 39 39 H 1.09001 * 109.46980 * 149.72899 * 22 21 3 40 40 H 1.09004 * 109.47113 * 29.72880 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3553 2.0383 -1.1925 5 6 2.8235 3.3459 -1.1911 6 7 3.1560 3.9716 -2.3948 7 6 3.6493 5.3511 -2.3915 8 1 4.2569 5.5175 -1.5020 9 6 4.4854 5.5886 -3.6226 10 1 4.6340 4.7918 -4.3363 11 6 5.0604 6.8231 -3.8377 12 7 4.8789 7.7935 -2.9689 13 14 6.0962 7.1177 -5.3641 14 1 5.2277 7.6068 -6.4649 15 1 7.1379 8.1335 -5.0670 16 1 6.7464 5.8471 -5.7740 17 6 2.4627 6.3170 -2.3866 18 6 1.6845 6.1622 -1.0786 19 6 2.9601 4.0303 0.0102 20 6 2.6295 3.4090 1.1982 21 6 2.1640 2.1067 1.1933 22 6 1.8043 1.4319 2.4919 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2477 1.5036 -2.1247 29 1 3.0603 3.4928 -3.2330 30 1 5.2838 8.6619 -3.1200 31 1 2.8271 7.3405 -2.4738 32 1 1.8074 6.0918 -3.2281 33 1 1.3200 5.1387 -0.9914 34 1 2.3397 6.3874 -0.2371 35 1 0.8393 6.8506 -1.0749 36 1 3.3235 5.0473 0.0148 37 1 2.7350 3.9406 2.1324 38 1 0.7538 1.6149 2.7177 39 1 2.4236 1.8338 3.2939 40 1 1.9755 0.3590 2.4035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300870137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:38 Heat of formation + Delta-G solvation = -7.471414 kcal Electronic energy + Delta-G solvation = -18146.147247 eV Core-core repulsion = 15538.257826 eV Total energy + Delta-G solvation = -2607.889421 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.70896 -38.11612 -35.24949 -34.11801 -33.24593 -31.68113 -30.12760 -28.87680 -26.35024 -24.77218 -24.65337 -22.72456 -22.08816 -20.20857 -18.99361 -17.41051 -17.15278 -16.44169 -15.99350 -15.63749 -15.24676 -14.93387 -14.49129 -14.37282 -14.22370 -13.97613 -13.58072 -13.30531 -13.17515 -13.02598 -12.82040 -12.74977 -12.63394 -12.44516 -12.19719 -12.03610 -11.91311 -11.63244 -11.53996 -11.25169 -10.96159 -10.62126 -10.27725 -9.43493 -8.19321 -7.86846 -6.33496 0.69241 0.91888 1.40725 1.41559 1.51574 2.36708 3.00277 3.09357 3.13167 3.99230 4.11935 4.33273 4.34610 4.48021 4.56562 4.60041 4.61226 4.69329 4.73036 4.82111 4.93979 4.99638 5.01687 5.10930 5.14418 5.21615 5.25443 5.31331 5.38363 5.41362 5.49123 5.57397 5.66360 5.71009 5.81352 5.87776 6.02935 6.16007 6.32082 6.58878 6.90708 7.26199 7.39721 8.86393 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035683 B = 0.005271 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.502433 B = 5311.123004 C = 5609.334816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.040 4.040 4 C -0.219 4.219 5 C 0.210 3.790 6 N -0.733 5.733 7 C 0.285 3.715 8 H 0.006 0.994 9 C -0.550 4.550 10 H 0.058 0.942 11 C 0.020 3.980 12 N -0.911 5.911 13 Si 0.964 3.036 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.271 1.271 17 C -0.124 4.124 18 C -0.136 4.136 19 C -0.220 4.220 20 C -0.080 4.080 21 C -0.167 4.167 22 C -0.097 4.097 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.391 0.609 30 H 0.265 0.735 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.192 -12.228 7.401 16.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.041 4.041 4 C -0.242 4.242 5 C 0.104 3.896 6 N -0.358 5.358 7 C 0.181 3.819 8 H 0.024 0.976 9 C -0.588 4.588 10 H 0.076 0.924 11 C -0.180 4.180 12 N -0.550 5.550 13 Si 0.789 3.211 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.195 1.195 17 C -0.164 4.164 18 C -0.193 4.193 19 C -0.242 4.242 20 C -0.099 4.099 21 C -0.169 4.169 22 C -0.154 4.154 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.137 0.863 29 H 0.224 0.776 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.126 0.874 37 H 0.145 0.855 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.061 -11.816 7.438 15.646 hybrid contribution 0.751 0.748 -1.362 1.726 sum -6.310 -11.069 6.077 14.116 Atomic orbital electron populations 1.21682 0.94065 1.02302 1.01731 1.20599 0.96685 0.91341 1.03278 1.19686 0.96314 0.96522 0.91583 1.20542 1.10818 0.94008 0.98826 1.18192 0.92405 0.91996 0.86991 1.45205 1.70643 1.14923 1.05017 1.18322 0.90561 0.77571 0.95459 0.97611 1.21574 1.31736 0.97760 1.07710 0.92391 1.25646 0.97285 0.95524 0.99544 1.69994 1.44711 1.03498 1.36763 0.85472 0.78367 0.77911 0.79347 1.19930 1.20737 1.19525 1.21848 0.96692 1.02527 0.95308 1.22030 0.98920 1.00626 0.97737 1.20987 1.10010 1.01006 0.92225 1.20917 0.97401 0.94763 0.96820 1.19686 1.06621 0.94693 0.95897 1.20678 1.01444 1.00440 0.92823 0.93840 0.90746 0.92503 0.91198 0.89389 0.86322 0.77588 0.92548 0.91066 0.95399 0.92863 0.93719 0.93807 0.87362 0.85453 0.91352 0.91803 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.89 71.98 0.71 -1.90 16 2 C -0.08 -1.73 5.56 29.85 0.17 -1.56 16 3 C -0.04 -1.17 5.13 -19.89 -0.10 -1.27 16 4 C -0.22 -7.42 9.53 22.40 0.21 -7.21 16 5 C 0.21 8.37 5.49 38.21 0.21 8.58 16 6 N -0.73 -31.98 5.18 -322.49 -1.67 -33.65 16 7 C 0.28 14.42 2.20 44.24 0.10 14.52 16 8 H 0.01 0.35 6.48 -2.39 -0.02 0.33 16 9 C -0.55 -29.82 8.73 25.60 0.22 -29.60 16 10 H 0.06 3.08 7.74 -2.92 -0.02 3.06 16 11 C 0.02 1.10 5.29 84.66 0.45 1.54 16 12 N -0.91 -51.31 11.29 21.45 0.24 -51.07 16 13 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 17 C -0.12 -6.05 5.45 30.59 0.17 -5.89 16 18 C -0.14 -5.68 8.22 71.98 0.59 -5.09 16 19 C -0.22 -8.62 6.72 22.40 0.15 -8.47 16 20 C -0.08 -2.63 9.69 22.25 0.22 -2.41 16 21 C -0.17 -4.76 5.88 -19.84 -0.12 -4.88 16 22 C -0.10 -1.99 9.37 71.24 0.67 -1.32 16 23 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.04 7.91 -2.39 -0.02 1.03 16 26 H 0.07 1.41 8.05 -2.39 -0.02 1.39 16 27 H 0.09 1.56 6.15 -2.38 -0.01 1.54 16 28 H 0.12 3.70 8.06 -2.91 -0.02 3.67 16 29 H 0.39 16.06 8.55 -92.70 -0.79 15.27 16 30 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.07 3.85 5.95 -2.39 -0.01 3.84 16 32 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.05 2.18 5.39 -2.39 -0.01 2.17 16 34 H 0.04 1.86 6.35 -2.38 -0.02 1.85 16 35 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.11 4.72 4.01 -2.91 -0.01 4.70 16 37 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.20 8.08 -2.39 -0.02 1.18 16 40 H 0.07 1.30 6.01 -2.38 -0.01 1.29 16 Total: -1.00 -58.71 310.29 4.48 -54.23 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.24 Total: 30.59 kcal Atomic # 6 Polarization: -48.59 SS G_CDS: 3.64 Total: -44.94 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -1.43 Total: -84.72 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -58.71 4.48 -54.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300870137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.757 kcal (2) G-P(sol) polarization free energy of solvation -58.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds