Wall clock time and date at job start Mon Mar 30 2020 05:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46604 * 2 1 4 4 C 1.38135 * 119.96105 * 264.99307 * 3 2 1 5 5 C 1.38894 * 119.92589 * 180.02562 * 4 3 2 6 6 N 1.39673 * 120.07383 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99598 * 175.13020 * 6 5 4 8 8 H 1.08995 * 109.47704 * 37.99448 * 7 6 5 9 9 C 1.50696 * 109.46719 * 277.98856 * 7 6 5 10 10 H 1.08004 * 120.00541 * 0.02562 * 9 7 6 11 11 C 1.37886 * 119.99827 * 179.72925 * 9 7 6 12 12 N 1.31509 * 119.99660 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99976 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47412 * 59.99608 * 13 11 9 15 15 H 1.48500 * 109.47154 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46899 * 299.99560 * 13 11 9 17 17 C 1.52999 * 109.46738 * 157.99481 * 7 6 5 18 18 C 1.52998 * 109.47064 * 294.85414 * 17 7 6 19 19 C 1.38937 * 119.84751 * 0.25635 * 5 4 3 20 20 C 1.38082 * 119.92386 * 359.51829 * 19 5 4 21 21 C 1.38261 * 119.96795 * 85.02378 * 3 2 1 22 22 C 1.50698 * 119.92344 * 0.02562 * 21 3 2 23 23 H 1.09001 * 109.46950 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47670 * 300.00422 * 1 2 3 25 25 H 1.09003 * 109.47411 * 60.00269 * 1 2 3 26 26 H 1.08992 * 109.47657 * 239.99915 * 2 1 3 27 27 H 1.09002 * 109.46942 * 119.99484 * 2 1 3 28 28 H 1.07998 * 120.03265 * 359.97438 * 4 3 2 29 29 H 0.97004 * 119.99987 * 355.12464 * 6 5 4 30 30 H 0.97005 * 120.00122 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.47769 * 54.85449 * 17 7 6 32 32 H 1.09006 * 109.47031 * 174.85306 * 17 7 6 33 33 H 1.09005 * 109.47279 * 185.07134 * 18 17 7 34 34 H 1.09001 * 109.47353 * 305.06633 * 18 17 7 35 35 H 1.09000 * 109.47519 * 65.07138 * 18 17 7 36 36 H 1.07999 * 120.03224 * 179.72295 * 19 5 4 37 37 H 1.07998 * 119.95897 * 180.25832 * 20 19 5 38 38 H 1.09007 * 109.47163 * 90.00276 * 22 21 3 39 39 H 1.08998 * 109.47311 * 210.00363 * 22 21 3 40 40 H 1.09003 * 109.47268 * 330.00756 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3605 2.0365 -1.1922 5 6 2.8238 3.3459 -1.1913 6 7 3.1573 3.9712 -2.3949 7 6 3.5435 5.3843 -2.4037 8 1 4.1445 5.6023 -1.5209 9 6 2.3054 6.2434 -2.3933 10 1 1.3286 5.7829 -2.3809 11 6 2.4198 7.6175 -2.3934 12 7 3.6093 8.1782 -2.4021 13 14 0.8852 8.6824 -2.3798 14 1 0.0896 8.3887 -1.1607 15 1 1.2766 10.1149 -2.3815 16 1 0.0693 8.3903 -3.5856 17 6 4.3601 5.6819 -3.6628 18 6 5.6776 4.9057 -3.6115 19 6 2.9604 4.0302 0.0101 20 6 2.6259 3.4104 1.1978 21 6 2.1644 2.1066 1.1932 22 6 1.8064 1.4314 2.4920 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.2579 1.4999 -2.1238 29 1 3.1332 3.4697 -3.2249 30 1 3.6898 9.1449 -2.4025 31 1 3.7938 5.3785 -4.5434 32 1 4.5696 6.7503 -3.7159 33 1 6.2980 5.1862 -4.4627 34 1 6.2027 5.1419 -2.6859 35 1 5.4710 3.8362 -3.6492 36 1 3.3246 5.0469 0.0147 37 1 2.7279 3.9432 2.1316 38 1 2.6855 0.9278 2.8941 39 1 1.4572 2.1778 3.2055 40 1 1.0176 0.7000 2.3160 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300870138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:42 Heat of formation + Delta-G solvation = -2.370833 kcal Electronic energy + Delta-G solvation = -18036.546084 eV Core-core repulsion = 15428.877841 eV Total energy + Delta-G solvation = -2607.668243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.12093 -36.39638 -33.82202 -32.64260 -31.61642 -29.92035 -28.97617 -26.92164 -25.01900 -23.47184 -22.88786 -21.41441 -20.24451 -18.98430 -16.51794 -16.30505 -15.53600 -14.68948 -14.63614 -13.97149 -13.82694 -13.36391 -13.14343 -12.88896 -12.87312 -12.47912 -12.29092 -12.00902 -11.73443 -11.56150 -11.33541 -11.27822 -10.99511 -10.95057 -10.76695 -10.54611 -10.25708 -9.97384 -9.91515 -9.71018 -9.61711 -8.64792 -8.42914 -8.05030 -6.42761 -5.99296 -4.15548 2.13730 2.35422 3.28672 3.32992 3.37007 4.33753 4.55934 4.64935 5.15630 5.20874 5.23155 5.49297 5.57397 5.64787 5.76478 5.85747 5.96792 5.99046 6.04204 6.11581 6.14015 6.16258 6.18110 6.36795 6.39593 6.46380 6.67697 6.70805 6.80568 6.95696 7.06142 7.16184 7.25767 7.38682 7.48735 7.66249 7.71840 7.90951 8.27377 8.39975 8.83931 8.93684 9.51911 10.95525 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021942 B = 0.006278 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.764826 B = 4458.618076 C = 4990.803864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.041 4.041 4 C -0.216 4.216 5 C 0.243 3.757 6 N -0.730 5.730 7 C 0.274 3.726 8 H 0.039 0.961 9 C -0.523 4.523 10 H 0.058 0.942 11 C 0.064 3.936 12 N -0.892 5.892 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.278 1.278 17 C -0.129 4.129 18 C -0.144 4.144 19 C -0.187 4.187 20 C -0.073 4.073 21 C -0.173 4.173 22 C -0.099 4.099 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.382 0.618 30 H 0.263 0.737 31 H 0.036 0.964 32 H 0.105 0.895 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.036 0.964 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 -11.725 4.007 12.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.041 4.041 4 C -0.240 4.240 5 C 0.135 3.865 6 N -0.352 5.352 7 C 0.171 3.829 8 H 0.057 0.943 9 C -0.562 4.562 10 H 0.076 0.924 11 C -0.138 4.138 12 N -0.531 5.531 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.167 4.167 18 C -0.202 4.202 19 C -0.209 4.209 20 C -0.092 4.092 21 C -0.175 4.175 22 C -0.156 4.156 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.215 0.785 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.123 0.877 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.147 0.853 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.229 -11.284 3.991 12.031 hybrid contribution -0.845 0.627 -0.436 1.139 sum -2.075 -10.657 3.555 11.424 Atomic orbital electron populations 1.21740 0.95286 1.00848 1.02380 1.20472 0.95787 0.93694 1.01879 1.19216 0.97795 0.94767 0.92366 1.20310 1.11222 0.95158 0.97268 1.17861 0.90588 0.90653 0.87428 1.45377 1.72526 1.12589 1.04732 1.18734 0.93910 0.75428 0.94790 0.94345 1.21566 0.93061 0.90935 1.50641 0.92417 1.24908 0.96062 0.97881 0.94959 1.69840 1.21895 1.10807 1.50512 0.86615 0.83315 0.79158 0.78713 1.20209 1.21241 1.20343 1.21852 0.93457 1.03440 0.97959 1.21802 0.99037 0.99286 1.00074 1.20826 1.07848 1.01385 0.90886 1.20676 0.97484 0.93830 0.97163 1.19217 1.08872 0.95338 0.94113 1.20617 1.00432 0.99753 0.94818 0.93106 0.92477 0.92581 0.91827 0.91475 0.87478 0.78541 0.92699 0.94496 0.87666 0.94648 0.93602 0.94485 0.85312 0.87287 0.92831 0.92761 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.70 37.16 0.36 -1.33 16 2 C -0.08 -1.03 5.36 -27.88 -0.15 -1.18 16 3 C -0.04 -0.66 5.13 -104.65 -0.54 -1.20 16 4 C -0.22 -3.86 9.53 -39.38 -0.38 -4.24 16 5 C 0.24 4.94 6.59 -83.78 -0.55 4.39 16 6 N -0.73 -15.21 4.81 -53.29 -0.26 -15.47 16 7 C 0.27 6.52 1.68 -69.09 -0.12 6.41 16 8 H 0.04 1.01 6.45 -51.93 -0.33 0.68 16 9 C -0.52 -13.92 8.70 -34.44 -0.30 -14.22 16 10 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 11 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 12 N -0.89 -24.38 11.31 55.43 0.63 -23.75 16 13 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C -0.13 -2.88 5.30 -26.73 -0.14 -3.02 16 18 C -0.14 -2.75 9.74 37.16 0.36 -2.39 16 19 C -0.19 -3.88 9.18 -39.38 -0.36 -4.24 16 20 C -0.07 -1.31 9.69 -39.61 -0.38 -1.70 16 21 C -0.17 -2.84 5.88 -104.59 -0.62 -3.45 16 22 C -0.10 -1.28 9.21 36.00 0.33 -0.95 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.67 6.91 -51.93 -0.36 0.32 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 27 H 0.07 0.77 6.98 -51.93 -0.36 0.41 16 28 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.38 7.25 8.59 -40.82 -0.35 6.89 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.11 2.65 5.97 -51.93 -0.31 2.34 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 36 H 0.13 2.94 6.21 -52.49 -0.33 2.61 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.06 0.68 5.41 -51.93 -0.28 0.40 16 LS Contribution 319.63 15.07 4.82 4.82 Total: -1.00 -27.04 319.63 -8.90 -35.95 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.50 Total: 7.85 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -2.57 Total: -25.51 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.37 Total: -39.22 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.04 -8.90 -35.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300870138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.578 kcal (2) G-P(sol) polarization free energy of solvation -27.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds