Wall clock time and date at job start Mon Mar 30 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46604 * 2 1 4 4 C 1.38135 * 119.96105 * 264.99307 * 3 2 1 5 5 C 1.38894 * 119.92589 * 180.02562 * 4 3 2 6 6 N 1.39673 * 120.07383 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99598 * 175.13020 * 6 5 4 8 8 H 1.08995 * 109.47704 * 37.99448 * 7 6 5 9 9 C 1.50696 * 109.46719 * 277.98856 * 7 6 5 10 10 H 1.08004 * 120.00541 * 0.02562 * 9 7 6 11 11 C 1.37886 * 119.99827 * 179.72925 * 9 7 6 12 12 N 1.31509 * 119.99660 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99976 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47412 * 59.99608 * 13 11 9 15 15 H 1.48500 * 109.47154 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46899 * 299.99560 * 13 11 9 17 17 C 1.52999 * 109.46738 * 157.99481 * 7 6 5 18 18 C 1.52998 * 109.47064 * 294.85414 * 17 7 6 19 19 C 1.38937 * 119.84751 * 0.25635 * 5 4 3 20 20 C 1.38082 * 119.92386 * 359.51829 * 19 5 4 21 21 C 1.38261 * 119.96795 * 85.02378 * 3 2 1 22 22 C 1.50698 * 119.92344 * 0.02562 * 21 3 2 23 23 H 1.09001 * 109.46950 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47670 * 300.00422 * 1 2 3 25 25 H 1.09003 * 109.47411 * 60.00269 * 1 2 3 26 26 H 1.08992 * 109.47657 * 239.99915 * 2 1 3 27 27 H 1.09002 * 109.46942 * 119.99484 * 2 1 3 28 28 H 1.07998 * 120.03265 * 359.97438 * 4 3 2 29 29 H 0.97004 * 119.99987 * 355.12464 * 6 5 4 30 30 H 0.97005 * 120.00122 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.47769 * 54.85449 * 17 7 6 32 32 H 1.09006 * 109.47031 * 174.85306 * 17 7 6 33 33 H 1.09005 * 109.47279 * 185.07134 * 18 17 7 34 34 H 1.09001 * 109.47353 * 305.06633 * 18 17 7 35 35 H 1.09000 * 109.47519 * 65.07138 * 18 17 7 36 36 H 1.07999 * 120.03224 * 179.72295 * 19 5 4 37 37 H 1.07998 * 119.95897 * 180.25832 * 20 19 5 38 38 H 1.09007 * 109.47163 * 90.00276 * 22 21 3 39 39 H 1.08998 * 109.47311 * 210.00363 * 22 21 3 40 40 H 1.09003 * 109.47268 * 330.00756 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3605 2.0365 -1.1922 5 6 2.8238 3.3459 -1.1913 6 7 3.1573 3.9712 -2.3949 7 6 3.5435 5.3843 -2.4037 8 1 4.1445 5.6023 -1.5209 9 6 2.3054 6.2434 -2.3933 10 1 1.3286 5.7829 -2.3809 11 6 2.4198 7.6175 -2.3934 12 7 3.6093 8.1782 -2.4021 13 14 0.8852 8.6824 -2.3798 14 1 0.0896 8.3887 -1.1607 15 1 1.2766 10.1149 -2.3815 16 1 0.0693 8.3903 -3.5856 17 6 4.3601 5.6819 -3.6628 18 6 5.6776 4.9057 -3.6115 19 6 2.9604 4.0302 0.0101 20 6 2.6259 3.4104 1.1978 21 6 2.1644 2.1066 1.1932 22 6 1.8064 1.4314 2.4920 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.2579 1.4999 -2.1238 29 1 3.1332 3.4697 -3.2249 30 1 3.6898 9.1449 -2.4025 31 1 3.7938 5.3785 -4.5434 32 1 4.5696 6.7503 -3.7159 33 1 6.2980 5.1862 -4.4627 34 1 6.2027 5.1419 -2.6859 35 1 5.4710 3.8362 -3.6492 36 1 3.3246 5.0469 0.0147 37 1 2.7279 3.9432 2.1316 38 1 2.6855 0.9278 2.8941 39 1 1.4572 2.1778 3.2055 40 1 1.0176 0.7000 2.3160 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300870138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:41 Heat of formation + Delta-G solvation = -15.285779 kcal Electronic energy + Delta-G solvation = -18037.106118 eV Core-core repulsion = 15428.877841 eV Total energy + Delta-G solvation = -2608.228277 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53623 -38.03290 -35.31779 -34.16469 -33.34129 -31.36156 -30.24485 -28.71128 -26.48764 -24.83326 -24.51960 -22.73587 -21.88800 -20.50472 -18.51734 -17.84624 -17.12803 -16.42280 -15.98002 -15.44214 -15.14036 -14.97535 -14.62238 -14.24582 -14.15883 -14.00479 -13.60522 -13.33227 -13.20160 -13.05320 -12.83953 -12.69741 -12.67820 -12.50383 -12.16475 -12.08487 -11.75634 -11.63109 -11.56748 -11.37465 -11.24327 -10.48997 -10.29463 -9.46292 -8.25444 -7.78866 -6.27416 0.69971 0.92922 1.37664 1.38782 1.46439 2.38374 2.99296 3.11964 3.14645 4.01346 4.11679 4.37290 4.39510 4.44659 4.53411 4.55955 4.64566 4.66921 4.72455 4.83120 4.96084 4.98302 5.01015 5.06761 5.14404 5.18244 5.24805 5.29425 5.30348 5.44639 5.50707 5.56458 5.69419 5.72585 5.81507 5.95249 6.01396 6.27928 6.28711 6.61607 6.93582 7.27077 7.45251 8.88378 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021942 B = 0.006278 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.764826 B = 4458.618076 C = 4990.803864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.040 4.040 4 C -0.216 4.216 5 C 0.217 3.783 6 N -0.732 5.732 7 C 0.286 3.714 8 H 0.005 0.995 9 C -0.536 4.536 10 H 0.041 0.959 11 C 0.021 3.979 12 N -0.912 5.912 13 Si 0.949 3.051 14 H -0.279 1.279 15 H -0.279 1.279 16 H -0.273 1.273 17 C -0.123 4.123 18 C -0.133 4.133 19 C -0.217 4.217 20 C -0.081 4.081 21 C -0.169 4.169 22 C -0.098 4.098 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.124 0.876 29 H 0.391 0.609 30 H 0.264 0.736 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 -14.115 4.553 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.041 4.041 4 C -0.239 4.239 5 C 0.111 3.889 6 N -0.357 5.357 7 C 0.182 3.818 8 H 0.023 0.977 9 C -0.575 4.575 10 H 0.059 0.941 11 C -0.178 4.178 12 N -0.551 5.551 13 Si 0.775 3.225 14 H -0.205 1.205 15 H -0.204 1.204 16 H -0.198 1.198 17 C -0.161 4.161 18 C -0.190 4.190 19 C -0.240 4.240 20 C -0.100 4.100 21 C -0.171 4.171 22 C -0.155 4.155 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.142 0.858 29 H 0.225 0.775 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.203 -13.702 4.547 14.604 hybrid contribution -0.570 1.276 -0.509 1.488 sum -2.773 -12.425 4.038 13.356 Atomic orbital electron populations 1.21727 0.94297 1.02372 1.01655 1.20555 0.96458 0.91119 1.03451 1.19723 0.96220 0.96628 0.91541 1.20569 1.10388 0.94083 0.98908 1.18097 0.92022 0.91894 0.86888 1.45053 1.73693 1.11449 1.05523 1.18348 0.92602 0.76886 0.93993 0.97717 1.21770 0.93317 0.91756 1.50698 0.94109 1.25560 0.98526 0.98931 0.94800 1.69952 1.23271 1.10933 1.50960 0.85754 0.80297 0.77952 0.78492 1.20520 1.20414 1.19821 1.21677 0.95105 1.02141 0.97221 1.21667 0.97255 0.99661 1.00439 1.20719 1.10248 1.00374 0.92670 1.20907 0.97398 0.94975 0.96700 1.19693 1.06790 0.94505 0.96121 1.20683 1.01749 1.00198 0.92824 0.90495 0.92651 0.93917 0.90738 0.89514 0.85810 0.77526 0.92681 0.94113 0.90546 0.92452 0.94717 0.92918 0.88888 0.85928 0.91158 0.92017 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.70 71.98 0.70 -2.12 16 2 C -0.08 -1.70 5.36 29.85 0.16 -1.54 16 3 C -0.04 -1.22 5.13 -19.88 -0.10 -1.32 16 4 C -0.22 -7.52 9.53 22.40 0.21 -7.31 16 5 C 0.22 9.05 6.59 38.22 0.25 9.31 16 6 N -0.73 -31.44 4.81 -322.52 -1.55 -32.99 16 7 C 0.29 14.25 1.68 44.24 0.07 14.32 16 8 H 0.01 0.29 6.45 -2.39 -0.02 0.27 16 9 C -0.54 -29.72 8.70 25.60 0.22 -29.49 16 10 H 0.04 2.34 7.81 -2.91 -0.02 2.32 16 11 C 0.02 1.18 5.29 84.66 0.45 1.63 16 12 N -0.91 -51.51 11.31 21.45 0.24 -51.27 16 13 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 C -0.12 -5.64 5.30 30.59 0.16 -5.48 16 18 C -0.13 -5.04 9.74 71.98 0.70 -4.34 16 19 C -0.22 -9.45 9.18 22.40 0.21 -9.25 16 20 C -0.08 -2.94 9.69 22.25 0.22 -2.73 16 21 C -0.17 -5.21 5.88 -19.84 -0.12 -5.32 16 22 C -0.10 -2.18 9.21 71.24 0.66 -1.53 16 23 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.05 1.11 6.91 -2.38 -0.02 1.09 16 25 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 1.48 8.05 -2.39 -0.02 1.46 16 27 H 0.09 1.58 6.98 -2.39 -0.02 1.56 16 28 H 0.12 3.81 8.06 -2.91 -0.02 3.78 16 29 H 0.39 14.96 8.59 -92.71 -0.80 14.16 16 30 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 3.98 5.97 -2.38 -0.01 3.96 16 33 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.81 7.90 -2.39 -0.02 1.80 16 36 H 0.09 4.64 6.21 -2.91 -0.02 4.62 16 37 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.06 1.30 8.08 -2.39 -0.02 1.28 16 40 H 0.08 1.45 5.41 -2.39 -0.01 1.44 16 Total: -1.00 -60.28 319.63 4.72 -55.55 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.22 Total: 27.66 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 3.79 Total: -45.18 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -1.31 Total: -84.25 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -60.28 4.72 -55.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300870138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.267 kcal (2) G-P(sol) polarization free energy of solvation -60.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds