Wall clock time and date at job start Mon Mar 30 2020 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.38127 * 119.96374 * 264.72918 * 3 2 1 5 5 C 1.38893 * 119.92513 * 179.73248 * 4 3 2 6 6 N 1.39678 * 120.07510 * 180.26987 * 5 4 3 7 7 C 1.46496 * 120.00060 * 180.29215 * 6 5 4 8 8 C 1.52997 * 109.47225 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47097 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47038 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00121 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00276 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00144 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99603 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.47069 * 90.00135 * 14 12 10 16 16 H 1.48496 * 109.46790 * 210.00096 * 14 12 10 17 17 H 1.48500 * 109.47097 * 330.00181 * 14 12 10 18 18 C 1.38929 * 119.85161 * 0.55864 * 5 4 3 19 19 C 1.38093 * 119.92181 * 359.71042 * 18 5 4 20 20 C 1.38262 * 119.96551 * 85.00049 * 3 2 1 21 21 C 1.50702 * 119.92121 * 359.97438 * 20 3 2 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 25 25 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 26 26 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 27 27 H 1.08007 * 120.03675 * 359.97438 * 4 3 2 28 28 H 0.96997 * 119.99831 * 0.29395 * 6 5 4 29 29 H 1.09002 * 109.46793 * 300.00132 * 7 6 5 30 30 H 1.08994 * 109.47261 * 59.99690 * 7 6 5 31 31 H 1.08998 * 109.46696 * 299.99492 * 8 7 6 32 32 H 1.08994 * 109.47449 * 59.99566 * 8 7 6 33 33 H 1.08998 * 109.46975 * 299.99372 * 9 8 7 34 34 H 1.09002 * 109.47321 * 59.99819 * 9 8 7 35 35 H 0.97005 * 119.99736 * 180.02562 * 13 12 10 36 36 H 1.07997 * 120.04384 * 179.68798 * 18 5 4 37 37 H 1.07999 * 119.95426 * 179.97438 * 19 18 5 38 38 H 1.09003 * 109.47235 * 90.00201 * 21 20 3 39 39 H 1.09005 * 109.47001 * 210.00119 * 21 20 3 40 40 H 1.09005 * 109.47191 * 329.99936 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3659 2.0346 -1.1916 5 6 2.8235 3.3460 -1.1912 6 7 3.1563 3.9716 -2.3949 7 6 3.6448 5.3527 -2.3920 8 6 3.9335 5.7946 -3.8280 9 6 4.4431 7.2372 -3.8250 10 6 4.7280 7.6723 -5.2394 11 1 4.5626 6.9881 -6.0586 12 6 5.2009 8.9434 -5.4878 13 7 5.4500 9.3229 -6.7221 14 14 5.4877 10.1266 -4.0709 15 1 6.8786 9.9749 -3.5731 16 1 5.2789 11.5200 -4.5398 17 1 4.5336 9.8253 -2.9736 18 6 2.9550 4.0321 0.0097 19 6 2.6251 3.4106 1.1979 20 6 2.1641 2.1067 1.1932 21 6 1.8044 1.4319 2.4919 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 2.2673 1.4967 -2.1230 28 1 3.0640 3.4916 -3.2326 29 1 2.8877 6.0050 -1.9567 30 1 4.5593 5.4134 -1.8020 31 1 4.6905 5.1424 -4.2635 32 1 3.0188 5.7340 -4.4176 33 1 3.6858 7.8891 -3.3896 34 1 5.3577 7.2983 -3.2352 35 1 5.7830 10.2171 -6.8967 36 1 3.3153 5.0502 0.0140 37 1 2.7275 3.9434 2.1317 38 1 2.6828 0.9277 2.8948 39 1 1.4552 2.1788 3.2049 40 1 1.0150 0.7012 2.3152 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300881566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:07 Heat of formation + Delta-G solvation = -7.705652 kcal Electronic energy + Delta-G solvation = -17006.554323 eV Core-core repulsion = 14398.654745 eV Total energy + Delta-G solvation = -2607.899578 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.72316 -36.71040 -34.29015 -33.32601 -32.12085 -30.61482 -29.50752 -27.37816 -25.27237 -24.07087 -22.64833 -21.88228 -20.25625 -19.79690 -16.99493 -16.64190 -16.02974 -15.22263 -14.95534 -14.58181 -14.34795 -14.03405 -13.67738 -13.47566 -13.27902 -12.79308 -12.69736 -12.60447 -12.13241 -12.07235 -11.83433 -11.65812 -11.43921 -11.08743 -10.97325 -10.91212 -10.58139 -10.10220 -9.91222 -9.71908 -9.55355 -9.24889 -8.65031 -8.57780 -7.13605 -6.08127 -4.06906 1.51686 1.70957 3.28478 3.36069 3.39185 3.68052 3.92131 4.41872 4.70949 4.82637 5.03431 5.14266 5.20427 5.25670 5.27095 5.37254 5.49572 5.52319 5.58334 5.62122 5.65289 5.70842 5.76645 5.84223 5.96453 6.00842 6.12183 6.17348 6.42263 6.43206 6.50493 6.57664 6.76108 6.81580 7.02111 7.20148 7.33970 7.54631 7.74630 7.94655 8.48942 8.96000 9.53852 11.05268 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.045486 B = 0.003490 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.425573 B = 8021.344195 C = 8516.747697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.036 4.036 4 C -0.198 4.198 5 C 0.222 3.778 6 N -0.744 5.744 7 C 0.119 3.881 8 C -0.113 4.113 9 C -0.010 4.010 10 C -0.523 4.523 11 H 0.071 0.929 12 C 0.066 3.934 13 N -0.903 5.903 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.265 1.265 18 C -0.201 4.201 19 C -0.069 4.069 20 C -0.156 4.156 21 C -0.105 4.105 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.116 0.884 28 H 0.398 0.602 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.018 0.982 34 H 0.013 0.987 35 H 0.263 0.737 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.050 -16.828 16.680 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.037 4.037 4 C -0.221 4.221 5 C 0.117 3.883 6 N -0.372 5.372 7 C -0.004 4.004 8 C -0.151 4.151 9 C -0.048 4.048 10 C -0.561 4.561 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.542 5.542 14 Si 0.708 3.292 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.190 1.190 18 C -0.224 4.224 19 C -0.087 4.087 20 C -0.158 4.158 21 C -0.162 4.162 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.134 0.866 28 H 0.232 0.768 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.914 -16.453 16.576 24.659 hybrid contribution 0.273 0.707 0.174 0.777 sum -7.640 -15.746 16.749 24.225 Atomic orbital electron populations 1.21747 0.94878 1.01380 1.02364 1.20536 0.96079 0.93111 1.02514 1.19377 0.96902 0.95247 0.92171 1.20404 1.09462 0.94309 0.97916 1.17883 0.92270 0.91358 0.86766 1.44956 1.72059 1.14631 1.05519 1.21595 0.97985 0.81120 0.99724 1.21660 1.01141 0.99517 0.92736 1.19496 0.95810 0.91342 0.98153 1.21109 1.43995 0.99231 0.91729 0.91044 1.25040 0.94833 0.98113 0.95527 1.69914 1.45611 1.19530 1.19131 0.86762 0.79059 0.80295 0.83083 1.20241 1.21337 1.18965 1.20662 1.09520 1.00914 0.91307 1.20719 0.96865 0.93998 0.97161 1.19389 1.06784 0.95109 0.94532 1.20693 1.01002 1.00095 0.94422 0.92657 0.92417 0.92513 0.91034 0.91351 0.86594 0.76763 0.92673 0.92670 0.92210 0.92187 0.96402 0.96842 0.92675 0.86170 0.86590 0.92221 0.92345 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.70 37.16 0.36 -0.82 16 2 C -0.09 -0.76 5.37 -27.88 -0.15 -0.91 16 3 C -0.04 -0.42 5.13 -104.65 -0.54 -0.96 16 4 C -0.20 -2.53 9.53 -39.38 -0.38 -2.91 16 5 C 0.22 3.15 6.65 -83.79 -0.56 2.59 16 6 N -0.74 -10.72 5.73 -58.64 -0.34 -11.06 16 7 C 0.12 1.92 4.91 -4.05 -0.02 1.90 16 8 C -0.11 -2.14 5.27 -26.73 -0.14 -2.28 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 11 H 0.07 2.17 7.99 -52.48 -0.42 1.76 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 13 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 14 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 17 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 18 C -0.20 -2.79 9.31 -39.38 -0.37 -3.16 16 19 C -0.07 -0.85 9.69 -39.61 -0.38 -1.23 16 20 C -0.16 -1.80 5.88 -104.59 -0.62 -2.42 16 21 C -0.11 -0.93 9.21 36.01 0.33 -0.59 16 22 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 0.47 6.90 -51.93 -0.36 0.11 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.57 6.98 -51.93 -0.36 0.21 16 26 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 27 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 28 H 0.40 5.24 8.49 -40.82 -0.35 4.89 16 29 H 0.06 0.89 7.95 -51.93 -0.41 0.47 16 30 H 0.06 0.88 7.95 -51.93 -0.41 0.47 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 34 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.12 1.64 6.74 -52.49 -0.35 1.29 16 37 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 40 H 0.06 0.50 5.41 -51.93 -0.28 0.21 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -30.47 322.18 -9.05 -39.52 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.68 Total: 1.29 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -3.00 Total: -24.46 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.44 Total: -38.15 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.47 -9.05 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300881566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.817 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds