Wall clock time and date at job start Mon Mar 30 2020 05:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.38127 * 119.96374 * 264.72918 * 3 2 1 5 5 C 1.38893 * 119.92513 * 179.73248 * 4 3 2 6 6 N 1.39678 * 120.07510 * 180.26987 * 5 4 3 7 7 C 1.46496 * 120.00060 * 180.29215 * 6 5 4 8 8 C 1.52997 * 109.47225 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47097 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47038 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00121 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00276 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00144 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99603 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.47069 * 90.00135 * 14 12 10 16 16 H 1.48496 * 109.46790 * 210.00096 * 14 12 10 17 17 H 1.48500 * 109.47097 * 330.00181 * 14 12 10 18 18 C 1.38929 * 119.85161 * 0.55864 * 5 4 3 19 19 C 1.38093 * 119.92181 * 359.71042 * 18 5 4 20 20 C 1.38262 * 119.96551 * 85.00049 * 3 2 1 21 21 C 1.50702 * 119.92121 * 359.97438 * 20 3 2 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 25 25 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 26 26 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 27 27 H 1.08007 * 120.03675 * 359.97438 * 4 3 2 28 28 H 0.96997 * 119.99831 * 0.29395 * 6 5 4 29 29 H 1.09002 * 109.46793 * 300.00132 * 7 6 5 30 30 H 1.08994 * 109.47261 * 59.99690 * 7 6 5 31 31 H 1.08998 * 109.46696 * 299.99492 * 8 7 6 32 32 H 1.08994 * 109.47449 * 59.99566 * 8 7 6 33 33 H 1.08998 * 109.46975 * 299.99372 * 9 8 7 34 34 H 1.09002 * 109.47321 * 59.99819 * 9 8 7 35 35 H 0.97005 * 119.99736 * 180.02562 * 13 12 10 36 36 H 1.07997 * 120.04384 * 179.68798 * 18 5 4 37 37 H 1.07999 * 119.95426 * 179.97438 * 19 18 5 38 38 H 1.09003 * 109.47235 * 90.00201 * 21 20 3 39 39 H 1.09005 * 109.47001 * 210.00119 * 21 20 3 40 40 H 1.09005 * 109.47191 * 329.99936 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3659 2.0346 -1.1916 5 6 2.8235 3.3460 -1.1912 6 7 3.1563 3.9716 -2.3949 7 6 3.6448 5.3527 -2.3920 8 6 3.9335 5.7946 -3.8280 9 6 4.4431 7.2372 -3.8250 10 6 4.7280 7.6723 -5.2394 11 1 4.5626 6.9881 -6.0586 12 6 5.2009 8.9434 -5.4878 13 7 5.4500 9.3229 -6.7221 14 14 5.4877 10.1266 -4.0709 15 1 6.8786 9.9749 -3.5731 16 1 5.2789 11.5200 -4.5398 17 1 4.5336 9.8253 -2.9736 18 6 2.9550 4.0321 0.0097 19 6 2.6251 3.4106 1.1979 20 6 2.1641 2.1067 1.1932 21 6 1.8044 1.4319 2.4919 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 2.2673 1.4967 -2.1230 28 1 3.0640 3.4916 -3.2326 29 1 2.8877 6.0050 -1.9567 30 1 4.5593 5.4134 -1.8020 31 1 4.6905 5.1424 -4.2635 32 1 3.0188 5.7340 -4.4176 33 1 3.6858 7.8891 -3.3896 34 1 5.3577 7.2983 -3.2352 35 1 5.7830 10.2171 -6.8967 36 1 3.3153 5.0502 0.0140 37 1 2.7275 3.9434 2.1317 38 1 2.6828 0.9277 2.8948 39 1 1.4552 2.1788 3.2049 40 1 1.0150 0.7012 2.3152 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300881566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:06 Heat of formation + Delta-G solvation = -24.245187 kcal Electronic energy + Delta-G solvation = -17007.271531 eV Core-core repulsion = 14398.654745 eV Total energy + Delta-G solvation = -2608.616786 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.65984 -37.87312 -35.79140 -34.53269 -33.68999 -31.90307 -30.34205 -28.88741 -26.43465 -25.01785 -24.04875 -22.85533 -21.91330 -20.75517 -18.96524 -17.82562 -17.07842 -16.38056 -16.32030 -16.09868 -15.37172 -15.14656 -14.79871 -14.56314 -14.32978 -14.20092 -14.02179 -13.76454 -13.35736 -13.05512 -12.86807 -12.78208 -12.58841 -12.46302 -12.26092 -11.87258 -11.77372 -11.62777 -11.58617 -11.40528 -11.34615 -10.78418 -10.61834 -9.58339 -8.31408 -8.16946 -6.36293 0.56861 0.75321 1.36045 1.37862 1.49868 2.35204 2.55436 2.97159 3.04175 3.90249 4.02548 4.09809 4.19308 4.28122 4.29934 4.44076 4.48956 4.57310 4.59062 4.73224 4.78947 4.88919 4.90812 4.94509 4.97874 5.00419 5.11430 5.13066 5.21373 5.33064 5.42024 5.47656 5.53118 5.53619 5.62431 5.64926 5.91382 6.08636 6.24898 6.48716 6.72009 6.88337 7.28632 8.85467 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.045486 B = 0.003490 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.425573 B = 8021.344195 C = 8516.747697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.042 4.042 4 C -0.207 4.207 5 C 0.201 3.799 6 N -0.747 5.747 7 C 0.136 3.864 8 C -0.102 4.102 9 C -0.008 4.008 10 C -0.536 4.536 11 H 0.031 0.969 12 C 0.002 3.998 13 N -0.953 5.953 14 Si 0.953 3.047 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.244 1.244 18 C -0.219 4.219 19 C -0.077 4.077 20 C -0.159 4.159 21 C -0.105 4.105 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.124 0.876 28 H 0.402 0.598 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.024 0.976 34 H 0.022 0.978 35 H 0.267 0.733 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.623 -17.735 19.602 27.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.043 4.043 4 C -0.229 4.229 5 C 0.098 3.902 6 N -0.377 5.377 7 C 0.011 3.989 8 C -0.140 4.140 9 C -0.046 4.046 10 C -0.574 4.574 11 H 0.049 0.951 12 C -0.195 4.195 13 N -0.593 5.593 14 Si 0.776 3.224 15 H -0.191 1.191 16 H -0.210 1.210 17 H -0.167 1.167 18 C -0.242 4.242 19 C -0.096 4.096 20 C -0.161 4.161 21 C -0.161 4.161 22 H 0.091 0.909 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.142 0.858 28 H 0.237 0.763 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.152 0.848 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.502 -17.395 19.518 27.493 hybrid contribution 0.418 0.877 -0.774 1.242 sum -8.084 -16.519 18.745 26.260 Atomic orbital electron populations 1.21729 0.94125 1.02401 1.01855 1.20592 0.96617 0.91468 1.03422 1.19754 0.96188 0.96572 0.91805 1.20616 1.09380 0.93989 0.98940 1.18065 0.93472 0.92100 0.86590 1.44778 1.72810 1.14003 1.06070 1.21263 0.98251 0.82194 0.97162 1.21448 1.00553 0.97051 0.94926 1.19441 0.96440 0.93872 0.94887 1.21494 1.43659 0.98850 0.93366 0.95075 1.26067 0.94529 1.00320 0.98550 1.70073 1.47095 1.20342 1.21813 0.85618 0.79818 0.77330 0.79651 1.19073 1.21024 1.16697 1.20807 1.10393 1.01079 0.91931 1.21002 0.96582 0.94582 0.97389 1.19798 1.05524 0.94937 0.95811 1.20744 1.01797 1.00486 0.93076 0.90898 0.92375 0.93576 0.89687 0.90924 0.85812 0.76333 0.92526 0.92437 0.92664 0.92687 0.95800 0.95921 0.92449 0.86494 0.84803 0.91246 0.91431 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.70 71.98 0.70 -1.28 16 2 C -0.08 -1.29 5.37 29.85 0.16 -1.13 16 3 C -0.04 -0.91 5.13 -19.89 -0.10 -1.01 16 4 C -0.21 -5.06 9.53 22.40 0.21 -4.85 16 5 C 0.20 5.56 6.65 38.21 0.25 5.82 16 6 N -0.75 -21.15 5.73 -339.43 -1.95 -23.09 16 7 C 0.14 4.23 4.91 86.38 0.42 4.65 16 8 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.54 -31.04 9.66 25.60 0.25 -30.79 16 11 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 12 C 0.00 0.12 5.47 84.66 0.46 0.58 16 13 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 14 Si 0.95 44.14 27.47 68.60 1.88 46.02 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 18 C -0.22 -5.87 9.31 22.40 0.21 -5.66 16 19 C -0.08 -1.77 9.69 22.25 0.22 -1.55 16 20 C -0.16 -3.32 5.88 -19.84 -0.12 -3.44 16 21 C -0.10 -1.52 9.21 71.24 0.66 -0.86 16 22 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.06 0.79 6.90 -2.39 -0.02 0.77 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.08 1.10 6.98 -2.39 -0.02 1.08 16 26 H 0.07 1.06 8.05 -2.39 -0.02 1.05 16 27 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 28 H 0.40 10.49 8.49 -92.71 -0.79 9.70 16 29 H 0.06 1.75 7.95 -2.39 -0.02 1.73 16 30 H 0.06 1.77 7.95 -2.39 -0.02 1.75 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.10 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 34 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 35 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 36 H 0.12 3.10 6.74 -2.91 -0.02 3.08 16 37 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.87 8.08 -2.38 -0.02 0.85 16 40 H 0.07 0.92 5.41 -2.38 -0.01 0.91 16 Total: -1.00 -66.10 322.18 4.00 -62.10 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.16 Total: 18.41 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 3.60 Total: -43.49 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -1.65 Total: -83.05 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Total: -66.10 4.00 -62.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300881566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.855 kcal (2) G-P(sol) polarization free energy of solvation -66.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds