Wall clock time and date at job start Mon Mar 30 2020 05:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.38312 * 119.92130 * 264.99990 * 3 2 1 5 5 C 1.38088 * 120.07285 * 180.02562 * 4 3 2 6 6 C 1.38933 * 119.92286 * 359.97438 * 5 4 3 7 7 N 1.39680 * 120.07052 * 180.02562 * 6 5 4 8 8 C 1.46494 * 119.99923 * 0.02562 * 7 6 5 9 9 C 1.53009 * 109.47057 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47086 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46768 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00050 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99632 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00463 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00000 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46953 * 60.00043 * 15 13 11 17 17 H 1.48498 * 109.47526 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47276 * 300.00446 * 15 13 11 19 19 C 1.38891 * 119.85300 * 359.97438 * 6 5 4 20 20 C 1.38118 * 119.92241 * 359.73134 * 19 6 5 21 21 C 1.50707 * 119.96430 * 180.29257 * 20 19 6 22 22 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 26 26 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 27 27 H 1.07997 * 119.96344 * 0.02562 * 4 3 2 28 28 H 1.07994 * 120.03619 * 180.02562 * 5 4 3 29 29 H 0.97001 * 119.99869 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.47201 * 299.99757 * 8 7 6 31 31 H 1.09007 * 109.47412 * 59.99978 * 8 7 6 32 32 H 1.08997 * 109.46637 * 300.00510 * 9 8 7 33 33 H 1.09004 * 109.46282 * 60.00175 * 9 8 7 34 34 H 1.09002 * 109.47262 * 300.00177 * 10 9 8 35 35 H 1.09002 * 109.46875 * 60.00318 * 10 9 8 36 36 H 0.97002 * 120.00557 * 179.97438 * 14 13 11 37 37 H 1.08003 * 120.03654 * 179.97438 * 19 6 5 38 38 H 1.08994 * 109.47074 * 270.25112 * 21 20 19 39 39 H 1.09002 * 109.46834 * 30.24664 * 21 20 19 40 40 H 1.09000 * 109.47328 * 150.24584 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3609 2.0364 -1.1942 5 6 2.8220 3.3380 -1.1978 6 6 2.9553 4.0293 -0.0001 7 7 3.4210 5.3462 -0.0002 8 6 3.7688 6.0000 -1.2641 9 6 4.2468 7.4266 -0.9858 10 6 4.6108 8.1093 -2.3058 11 6 5.0821 9.5141 -2.0315 12 1 5.1189 9.8830 -1.0171 13 6 5.4675 10.3281 -3.0754 14 7 5.4232 9.8788 -4.3107 15 14 6.0511 12.0697 -2.7356 16 1 7.2450 12.0284 -1.8534 17 1 6.4045 12.7323 -4.0167 18 1 4.9674 12.8333 -2.0664 19 6 2.6235 3.4085 1.1972 20 6 2.1571 2.1084 1.1930 21 6 1.7906 1.4360 2.4910 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5137 0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 2.2566 1.4985 -2.1249 28 1 3.0779 3.8183 -2.1306 29 1 3.5133 5.8281 0.8366 30 1 4.5637 5.4397 -1.7564 31 1 2.8918 6.0308 -1.9108 32 1 3.4517 7.9867 -0.4937 33 1 5.1237 7.3962 -0.3390 34 1 5.4061 7.5490 -2.7974 35 1 3.7341 8.1396 -2.9529 36 1 5.6939 10.4516 -5.0452 37 1 2.7264 3.9430 2.1300 38 1 2.6666 0.9318 2.8990 39 1 1.4386 2.1844 3.2011 40 1 1.0016 0.7057 2.3118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300888017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:09 Heat of formation + Delta-G solvation = -26.709037 kcal Electronic energy + Delta-G solvation = -16931.988963 eV Core-core repulsion = 14323.265336 eV Total energy + Delta-G solvation = -2608.723627 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.65758 -37.87575 -35.83146 -34.34291 -33.21279 -32.70148 -29.78639 -27.74655 -27.69420 -24.90531 -24.07879 -22.85178 -21.95042 -20.82221 -18.54012 -17.84036 -17.05101 -16.52337 -16.33913 -16.20216 -15.48139 -14.93122 -14.69341 -14.39702 -14.09428 -14.01612 -13.94568 -13.70814 -13.49740 -13.09384 -12.86892 -12.82955 -12.58134 -12.55211 -12.38118 -11.98404 -11.69451 -11.63708 -11.52204 -11.41955 -11.21375 -10.64695 -10.57220 -9.55821 -8.22277 -8.19047 -6.33822 0.56614 0.74850 1.39379 1.42298 1.50305 2.38284 2.56620 2.96664 3.11162 3.96205 4.03139 4.14072 4.19188 4.20286 4.34542 4.47127 4.50294 4.60079 4.65231 4.72909 4.80652 4.89754 4.93564 4.94451 5.03499 5.12587 5.13273 5.16532 5.21197 5.31681 5.46505 5.48821 5.55452 5.65710 5.68114 5.80920 5.91595 6.06700 6.20616 6.47207 6.82298 6.90769 7.35674 8.89539 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.056446 B = 0.003173 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.933804 B = 8823.286191 C = 9197.343864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C -0.155 4.155 4 C -0.074 4.074 5 C -0.224 4.224 6 C 0.202 3.798 7 N -0.744 5.744 8 C 0.139 3.861 9 C -0.103 4.103 10 C 0.027 3.973 11 C -0.546 4.546 12 H 0.062 0.938 13 C -0.001 4.001 14 N -0.933 5.933 15 Si 0.966 3.034 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.267 1.267 19 C -0.209 4.209 20 C -0.044 4.044 21 C -0.115 4.115 22 H 0.045 0.955 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.131 0.869 28 H 0.110 0.890 29 H 0.403 0.597 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.059 0.941 34 H -0.006 1.006 35 H -0.006 1.006 36 H 0.264 0.736 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.336 -19.090 12.015 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.157 4.157 4 C -0.093 4.093 5 C -0.247 4.247 6 C 0.098 3.902 7 N -0.374 5.374 8 C 0.014 3.986 9 C -0.141 4.141 10 C -0.011 4.011 11 C -0.584 4.584 12 H 0.080 0.920 13 C -0.199 4.199 14 N -0.573 5.573 15 Si 0.790 3.210 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.231 4.231 20 C -0.044 4.044 21 C -0.171 4.171 22 H 0.064 0.936 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.148 0.852 28 H 0.128 0.872 29 H 0.239 0.761 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.013 0.987 35 H 0.013 0.987 36 H 0.073 0.927 37 H 0.147 0.853 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.260 -18.960 11.644 23.734 hybrid contribution 0.550 1.480 -0.278 1.603 sum -7.710 -17.481 11.366 22.231 Atomic orbital electron populations 1.21769 0.94738 1.02089 1.01693 1.20428 0.96127 0.91455 1.03049 1.19766 1.05752 0.97914 0.92251 1.20971 0.96376 0.93529 0.98387 1.20782 1.10410 0.96904 0.96564 1.18086 0.92762 0.84806 0.94501 1.44758 1.72567 1.11354 1.08719 1.21188 0.98460 0.92918 0.86022 1.21564 1.00266 0.93343 0.98913 1.18913 0.94901 0.94495 0.92747 1.21651 1.43943 0.99256 0.93545 0.92021 1.25993 0.95744 1.03313 0.94818 1.70087 1.49064 1.38489 0.99681 0.85487 0.79096 0.78845 0.77547 1.19125 1.20831 1.19142 1.20632 1.09643 0.96710 0.96137 1.19791 0.95754 0.92864 0.96026 1.20909 1.02428 1.00830 0.92951 0.93611 0.91181 0.92663 0.90245 0.91105 0.85151 0.87182 0.76127 0.93362 0.93387 0.92254 0.92256 0.98741 0.98743 0.92691 0.85337 0.90262 0.91104 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.70 71.98 0.70 -1.37 16 2 C -0.07 -1.17 5.36 29.85 0.16 -1.01 16 3 C -0.15 -3.44 5.14 -19.84 -0.10 -3.54 16 4 C -0.07 -1.86 9.67 22.25 0.22 -1.65 16 5 C -0.22 -6.64 9.31 22.40 0.21 -6.43 16 6 C 0.20 5.97 6.65 38.21 0.25 6.23 16 7 N -0.74 -22.56 5.73 -339.40 -1.95 -24.50 16 8 C 0.14 4.89 4.91 86.38 0.42 5.31 16 9 C -0.10 -4.16 5.27 30.60 0.16 -4.00 16 10 C 0.03 1.43 4.97 29.85 0.15 1.57 16 11 C -0.55 -31.08 9.11 25.60 0.23 -30.85 16 12 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 13 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 14 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 15 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 19 C -0.21 -5.29 9.55 22.40 0.21 -5.07 16 20 C -0.04 -0.97 5.88 -19.88 -0.12 -1.08 16 21 C -0.11 -1.74 9.21 71.24 0.66 -1.08 16 22 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 24 H 0.05 0.79 6.87 -2.39 -0.02 0.77 16 25 H 0.08 1.07 7.00 -2.39 -0.02 1.05 16 26 H 0.07 1.05 8.05 -2.39 -0.02 1.03 16 27 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 28 H 0.11 3.40 6.73 -2.91 -0.02 3.38 16 29 H 0.40 10.85 8.49 -92.71 -0.79 10.07 16 30 H 0.05 1.76 7.95 -2.39 -0.02 1.74 16 31 H 0.05 1.75 7.95 -2.38 -0.02 1.73 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 34 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 0.97 8.09 -2.39 -0.02 0.96 16 40 H 0.08 1.03 5.39 -2.39 -0.01 1.02 16 Total: -1.00 -64.30 325.74 4.20 -60.11 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.22 Total: 17.45 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 3.62 Total: -42.55 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -1.66 Total: -81.25 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -64.30 4.20 -60.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300888017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.397 kcal (2) G-P(sol) polarization free energy of solvation -64.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds