Wall clock time and date at job start Mon Mar 30 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.50706 * 109.46953 * 60.00071 * 4 2 1 6 6 C 1.38231 * 119.99890 * 269.72761 * 5 4 2 7 7 C 1.38243 * 119.99932 * 179.76127 * 6 5 4 8 8 C 1.38235 * 119.99614 * 0.51210 * 7 6 5 9 9 C 1.38238 * 120.00119 * 359.74635 * 8 7 6 10 10 C 1.38234 * 120.00044 * 359.97438 * 9 8 7 11 11 N 1.46906 * 109.47302 * 120.00381 * 2 1 3 12 12 C 1.46898 * 110.99498 * 299.99832 * 11 2 1 13 13 C 1.53006 * 109.47138 * 179.97438 * 12 11 2 14 14 C 1.50699 * 109.47125 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00430 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99819 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00002 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00042 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47079 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47406 * 119.99653 * 18 16 14 21 21 H 1.48500 * 109.46843 * 239.99666 * 18 16 14 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 30 30 H 1.08006 * 120.00368 * 0.02562 * 6 5 4 31 31 H 1.07997 * 120.00078 * 180.23244 * 7 6 5 32 32 H 1.08001 * 120.00016 * 179.71719 * 8 7 6 33 33 H 1.08003 * 119.99866 * 179.97438 * 9 8 7 34 34 H 1.07997 * 119.99975 * 179.97438 * 10 9 8 35 35 H 1.00901 * 111.00228 * 176.04483 * 11 2 1 36 36 H 1.08995 * 109.47296 * 299.99915 * 12 11 2 37 37 H 1.08997 * 109.47334 * 60.00216 * 12 11 2 38 38 H 1.09004 * 109.46866 * 299.99877 * 13 12 11 39 39 H 1.08997 * 109.46770 * 59.99946 * 13 12 11 40 40 H 0.96998 * 120.00177 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 6 0.3326 -0.3800 -3.0473 7 6 -0.1306 0.2750 -4.1732 8 6 0.6165 1.2920 -4.7375 9 6 1.8242 1.6575 -4.1729 10 6 2.2846 1.0064 -3.0438 11 7 2.0197 -0.6926 1.1994 12 6 1.5487 -0.0265 2.4210 13 6 2.0772 -0.7751 3.6463 14 6 1.5935 -0.0920 4.8995 15 1 0.9717 0.7881 4.8292 16 6 1.9457 -0.5903 6.1360 17 7 2.7033 -1.6619 6.2216 18 14 1.3455 0.2559 7.6894 19 1 0.5144 1.4308 7.3236 20 1 0.5333 -0.6958 8.4892 21 1 2.5123 0.7056 8.4904 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 3.1300 -0.7217 -1.2490 29 1 1.6766 -1.7489 -1.2493 30 1 -0.2493 -1.1773 -2.6088 31 1 -1.0740 -0.0109 -4.6145 32 1 0.2569 1.8006 -5.6197 33 1 2.4081 2.4518 -4.6141 34 1 3.2283 1.2918 -2.6030 35 1 3.0262 -0.7627 1.1909 36 1 1.9121 1.0010 2.4378 37 1 0.4588 -0.0267 2.4379 38 1 1.7133 -1.8024 3.6293 39 1 3.1671 -0.7753 3.6297 40 1 2.9508 -2.0127 7.0915 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000303549224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:54 Heat of formation + Delta-G solvation = -11.946727 kcal Electronic energy + Delta-G solvation = -17657.688376 eV Core-core repulsion = 15049.604891 eV Total energy + Delta-G solvation = -2608.083485 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.71154 -38.79300 -35.67970 -34.02055 -31.81618 -31.78212 -29.69268 -28.23058 -27.84106 -25.94066 -23.29620 -22.90883 -21.86217 -20.06757 -18.46515 -17.47330 -16.92722 -16.36542 -16.23746 -16.04319 -15.77335 -15.16260 -14.71368 -14.35687 -14.21542 -14.12342 -13.64705 -13.52396 -13.30742 -13.07280 -12.79155 -12.71803 -12.62537 -12.41455 -12.15052 -11.87242 -11.75441 -11.68686 -11.62505 -11.32168 -11.15874 -10.56466 -9.72184 -9.51061 -9.19001 -8.20350 -6.31656 0.51593 0.56970 1.39807 1.40293 1.53653 2.40302 2.91489 3.12970 3.32654 3.89217 3.98658 4.09043 4.17341 4.23423 4.30465 4.38394 4.50979 4.56426 4.66360 4.71954 4.77611 4.78547 4.90345 4.98749 5.00502 5.05901 5.09380 5.22357 5.24035 5.34360 5.39915 5.47874 5.64987 5.69383 5.70210 5.81790 5.82746 6.17690 6.19671 6.33825 6.60680 6.86162 7.37598 8.91999 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.054335 B = 0.003749 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.196727 B = 7467.413774 C = 7489.902125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.115 3.885 3 C -0.175 4.175 4 C -0.063 4.063 5 C -0.079 4.079 6 C -0.126 4.126 7 C -0.127 4.127 8 C -0.133 4.133 9 C -0.128 4.128 10 C -0.126 4.126 11 N -0.686 5.686 12 C 0.084 3.916 13 C 0.032 3.968 14 C -0.543 4.543 15 H 0.058 0.942 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.277 1.277 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.337 0.663 36 H 0.021 0.979 37 H 0.058 0.942 38 H -0.007 1.007 39 H -0.010 1.010 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 6.237 -21.904 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.025 3.975 3 C -0.234 4.234 4 C -0.101 4.101 5 C -0.079 4.079 6 C -0.144 4.144 7 C -0.145 4.145 8 C -0.150 4.150 9 C -0.146 4.146 10 C -0.144 4.144 11 N -0.317 5.317 12 C -0.044 4.044 13 C -0.006 4.006 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.203 1.203 22 H 0.090 0.910 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.155 0.845 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.011 0.989 39 H 0.008 0.992 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.780 5.654 -21.784 22.821 hybrid contribution 0.536 0.833 1.206 1.560 sum -3.244 6.487 -20.578 21.819 Atomic orbital electron populations 1.21896 0.94084 1.01910 1.01386 1.20870 0.95626 0.91547 0.89505 1.22536 1.01086 0.97790 1.02016 1.20530 1.00697 0.98802 0.90023 1.19815 0.95317 0.96740 0.96064 1.21257 0.95892 1.00664 0.96580 1.21415 1.00589 0.96475 0.96025 1.21439 0.95080 0.97782 1.00746 1.21410 0.96905 1.00234 0.96014 1.21238 1.00332 0.96254 0.96618 1.60674 1.15985 1.53697 1.01313 1.21797 0.99095 0.94767 0.88788 1.18928 0.94518 0.94956 0.92162 1.21640 1.31690 1.12558 0.92265 0.92330 1.25976 0.95175 0.95670 1.02940 1.70117 1.37761 1.23887 1.25404 0.85378 0.78255 0.78655 0.78627 1.18630 1.20306 1.20268 0.91001 0.93937 0.92502 0.93787 0.92546 0.90930 0.90790 0.90649 0.85767 0.84443 0.84233 0.84461 0.85741 0.84512 0.96126 0.92392 0.98881 0.99153 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 7.66 71.98 0.55 -3.25 16 2 C 0.12 3.26 0.74 3.52 0.00 3.26 16 3 C -0.18 -4.71 7.64 71.98 0.55 -4.16 16 4 C -0.06 -1.50 4.72 29.85 0.14 -1.36 16 5 C -0.08 -1.70 4.00 -19.86 -0.08 -1.77 16 6 C -0.13 -2.53 7.90 22.27 0.18 -2.35 16 7 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 8 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 9 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 10 C -0.13 -2.48 7.88 22.27 0.18 -2.31 16 11 N -0.69 -24.52 6.09 -470.19 -2.86 -27.39 16 12 C 0.08 3.62 4.84 86.31 0.42 4.04 16 13 C 0.03 1.73 5.23 29.85 0.16 1.89 16 14 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 16 C 0.00 0.01 5.46 84.65 0.46 0.48 16 17 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 18 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H 0.07 1.76 6.19 -2.39 -0.01 1.75 16 23 H 0.04 1.31 6.40 -2.39 -0.02 1.30 16 24 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.04 1.33 6.40 -2.39 -0.02 1.31 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 1.74 6.17 -2.39 -0.01 1.73 16 28 H 0.07 1.69 8.09 -2.39 -0.02 1.67 16 29 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 30 H 0.12 2.36 8.04 -2.91 -0.02 2.34 16 31 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 33 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 34 H 0.12 2.25 8.03 -2.91 -0.02 2.22 16 35 H 0.34 11.75 8.72 -89.69 -0.78 10.97 16 36 H 0.02 0.88 6.30 -2.39 -0.02 0.86 16 37 H 0.06 2.52 6.30 -2.39 -0.02 2.51 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -65.03 317.08 3.13 -61.90 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.22 Total: 18.65 kcal Atomic # 6 Polarization: -46.18 SS G_CDS: 3.46 Total: -42.73 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -2.58 Total: -84.71 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.03 3.13 -61.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303549224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.956 kcal (2) G-P(sol) polarization free energy of solvation -65.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds