Wall clock time and date at job start Mon Mar 30 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52973 * 109.44202 * 358.89269 * 3 2 1 5 5 C 1.53019 * 109.40950 * 300.34508 * 4 3 2 6 6 H 1.09004 * 109.44894 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46527 * 60.08208 * 5 4 3 8 8 C 1.52989 * 109.53092 * 300.06058 * 5 4 3 9 9 C 1.53022 * 109.52171 * 59.86692 * 8 5 4 10 10 H 1.09000 * 109.48169 * 180.02562 * 9 8 5 11 11 C 1.50699 * 109.48199 * 60.02564 * 9 8 5 12 12 H 1.08002 * 119.99784 * 233.15431 * 11 9 8 13 13 C 1.37872 * 120.00188 * 53.16442 * 11 9 8 14 14 N 1.31520 * 119.99926 * 9.29590 * 13 11 9 15 15 Si 1.86796 * 120.00227 * 189.30329 * 13 11 9 16 16 H 1.48509 * 109.47235 * 59.99379 * 15 13 11 17 17 H 1.48503 * 109.47390 * 299.99727 * 15 13 11 18 18 H 1.48498 * 109.47283 * 179.97438 * 15 13 11 19 19 C 1.52971 * 109.39768 * 300.05126 * 9 8 5 20 20 H 1.08998 * 109.49540 * 300.15096 * 19 9 8 21 21 C 1.53082 * 109.59402 * 179.97438 * 19 9 8 22 22 C 1.53144 * 109.08512 * 182.34549 * 21 19 9 23 23 C 1.53026 * 109.33537 * 57.58713 * 22 21 19 24 24 N 1.46813 * 109.44181 * 119.14193 * 3 2 1 25 25 H 4.44570 * 5.63521 * 180.02562 * 4 1 2 26 26 H 1.08993 * 109.47882 * 180.36005 * 4 3 2 27 27 H 1.09000 * 109.49104 * 60.33006 * 4 3 2 28 28 H 1.09001 * 109.46901 * 299.82169 * 7 5 4 29 29 H 1.09003 * 109.46739 * 59.81322 * 7 5 4 30 30 H 1.08994 * 109.47126 * 179.81406 * 7 5 4 31 31 H 1.08998 * 109.46227 * 299.84923 * 8 5 4 32 32 H 1.09000 * 109.45271 * 179.87204 * 8 5 4 33 33 H 0.96999 * 119.99946 * 7.08950 * 14 13 11 34 34 H 1.08998 * 109.53767 * 62.46595 * 21 19 9 35 35 H 1.09003 * 109.53336 * 302.22527 * 21 19 9 36 36 H 1.08990 * 109.49715 * 297.62545 * 22 21 19 37 37 H 1.09004 * 109.51621 * 177.55654 * 22 21 19 38 38 H 1.08995 * 109.45177 * 180.92205 * 23 22 21 39 39 H 1.09006 * 109.43061 * 60.97717 * 23 22 21 40 40 H 1.00894 * 110.99706 * 182.03879 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 -1.4413 0.0279 5 6 2.6379 -2.1396 1.2871 6 1 3.0012 -3.1671 1.3078 7 6 1.1079 -2.1406 1.2768 8 6 3.1388 -1.3962 2.5269 9 6 2.6317 0.0473 2.4972 10 1 2.9893 0.5764 3.3805 11 6 1.1248 0.0505 2.4858 12 1 0.5917 0.5990 1.7234 13 6 0.4266 -0.6467 3.4489 14 7 1.0623 -1.1609 4.4790 15 14 -1.4223 -0.8610 3.2905 16 1 -1.7307 -1.5835 2.0302 17 1 -2.0753 0.4726 3.2691 18 1 -1.9307 -1.6430 4.4460 19 6 3.1529 0.7431 1.2386 20 1 4.2428 0.7381 1.2450 21 6 2.6476 2.1877 1.2040 22 6 3.1270 2.8551 -0.0883 23 6 2.6253 2.0514 -1.2899 24 7 3.1344 0.6751 -1.2092 25 1 -1.0498 -0.0004 -0.0002 26 1 4.2458 -1.4414 0.0343 27 1 2.7975 -1.9709 -0.8549 28 1 0.7441 -1.1132 1.2583 29 1 0.7509 -2.6683 0.3923 30 1 0.7388 -2.6408 2.1721 31 1 4.2287 -1.3982 2.5359 32 1 2.7672 -1.8932 3.4230 33 1 2.0022 -0.9640 4.6164 34 1 3.0406 2.7319 2.0627 35 1 1.5580 2.1935 1.2348 36 1 4.2164 2.8848 -0.0999 37 1 2.7348 3.8708 -0.1407 38 1 2.9791 2.5155 -2.2104 39 1 1.5353 2.0364 -1.2866 40 1 4.1424 0.6597 -1.2496 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309048617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:35 Heat of formation + Delta-G solvation = 99.583605 kcal Electronic energy + Delta-G solvation = -20355.841344 eV Core-core repulsion = 17752.594177 eV Total energy + Delta-G solvation = -2603.247167 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.62138 -36.38041 -33.29575 -32.34647 -31.55516 -30.30975 -28.14373 -25.85977 -24.51105 -22.97237 -22.10740 -20.90928 -20.15670 -18.36655 -16.98682 -16.44994 -15.55946 -14.65238 -14.49417 -14.00978 -13.81284 -13.40385 -13.13577 -12.67878 -12.47646 -11.84577 -11.71540 -11.52384 -11.25308 -11.22682 -10.94263 -10.82910 -10.70312 -10.49841 -10.20198 -10.10752 -9.95322 -9.60390 -9.43517 -9.14581 -9.01341 -8.29207 -8.08249 -7.69695 -7.64807 -6.14989 -3.75459 3.43442 3.47452 3.58320 3.75874 3.80670 4.57879 4.71579 4.99890 5.28954 5.34536 5.42096 5.49377 5.59275 5.76528 5.92544 5.99381 6.01552 6.08734 6.25191 6.29312 6.35361 6.42568 6.52218 6.56729 6.63624 6.69128 6.78448 6.85620 7.00454 7.14471 7.23315 7.25149 7.38384 7.52048 7.58547 7.67765 7.74544 8.15763 8.45033 8.58714 8.63469 8.94858 9.71808 11.10161 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025498 B = 0.011558 C = 0.010872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.880879 B = 2421.896427 C = 2574.803691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.070 4.070 3 C 0.236 3.764 4 C -0.092 4.092 5 C -0.065 4.065 6 H 0.036 0.964 7 C -0.214 4.214 8 C -0.121 4.121 9 C 0.039 3.961 10 H 0.013 0.987 11 C -0.596 4.596 12 H 0.086 0.914 13 C 0.031 3.969 14 N -0.910 5.910 15 Si 1.032 2.968 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.285 1.285 19 C -0.091 4.091 20 H 0.048 0.952 21 C -0.109 4.109 22 C -0.158 4.158 23 C 0.057 3.943 24 N -0.680 5.680 25 H 0.204 0.796 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.181 0.819 29 H 0.000 1.000 30 H 0.040 0.960 31 H 0.018 0.982 32 H 0.079 0.921 33 H 0.272 0.728 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 4.090 -8.805 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.071 4.071 3 C 0.146 3.854 4 C -0.130 4.130 5 C -0.084 4.084 6 H 0.055 0.945 7 C -0.268 4.268 8 C -0.159 4.159 9 C 0.020 3.980 10 H 0.031 0.969 11 C -0.632 4.632 12 H 0.103 0.897 13 C -0.173 4.173 14 N -0.548 5.548 15 Si 0.860 3.140 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.211 1.211 19 C -0.111 4.111 20 H 0.066 0.934 21 C -0.146 4.146 22 C -0.197 4.197 23 C -0.072 4.072 24 N -0.308 5.308 25 H 0.221 0.779 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.197 0.803 29 H 0.019 0.981 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.626 3.074 -8.546 9.226 hybrid contribution 1.812 0.940 0.238 2.056 sum 3.439 4.014 -8.308 9.847 Atomic orbital electron populations 1.24169 0.95591 1.02809 1.04242 1.21237 0.92815 0.97535 0.95487 1.17767 0.85575 0.94216 0.87860 1.21524 0.98799 0.93567 0.99139 1.20726 0.98120 0.96017 0.93533 0.94529 1.24099 0.94557 1.11099 0.97067 1.21720 0.95742 0.99584 0.98813 1.18791 0.96929 0.91036 0.91255 0.96931 1.22479 0.90930 1.34146 1.15667 0.89676 1.25456 1.05095 0.93902 0.92852 1.70754 1.12762 1.42981 1.28314 0.84133 0.76616 0.76590 0.76630 1.20361 1.21553 1.21104 1.21638 0.97324 0.94810 0.97296 0.93385 1.21584 1.02527 0.95153 0.95353 1.22310 1.00205 0.99664 0.97519 1.22009 1.01061 0.87702 0.96460 1.60738 1.14393 1.16354 1.39327 0.77894 0.92883 0.92155 0.80312 0.98121 0.94087 0.96278 0.90233 0.91561 0.92828 0.90371 0.92857 0.92230 0.91505 0.90648 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.03 14.37 29.55 0.42 -4.60 16 2 C -0.07 -1.44 4.66 -37.12 -0.17 -1.61 16 3 C 0.24 4.43 0.66 -134.43 -0.09 4.35 16 4 C -0.09 -1.75 4.75 -26.73 -0.13 -1.88 16 5 C -0.06 -1.41 3.19 -90.61 -0.29 -1.70 16 6 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 7 C -0.21 -5.04 5.41 37.16 0.20 -4.84 16 8 C -0.12 -2.78 4.79 -26.73 -0.13 -2.91 16 9 C 0.04 0.91 1.83 -91.78 -0.17 0.74 16 10 H 0.01 0.32 7.93 -51.93 -0.41 -0.09 16 11 C -0.60 -14.86 4.12 -34.44 -0.14 -15.00 16 12 H 0.09 2.09 2.60 -52.49 -0.14 1.95 16 13 C 0.03 0.83 3.22 -17.82 -0.06 0.77 16 14 N -0.91 -26.04 12.50 55.43 0.69 -25.35 16 15 Si 1.03 24.38 27.64 -169.99 -4.70 19.68 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 C -0.09 -1.78 1.87 -90.57 -0.17 -1.95 16 20 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.11 -1.99 4.85 -26.61 -0.13 -2.12 16 22 C -0.16 -2.32 6.08 -26.64 -0.16 -2.48 16 23 C 0.06 0.84 6.30 -3.77 -0.02 0.82 16 24 N -0.68 -10.86 6.31 -102.81 -0.65 -11.51 16 25 H 0.20 3.57 7.80 -54.10 -0.42 3.15 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.18 4.18 0.16 -76.17 -0.01 4.17 16 29 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.04 1.05 6.49 -51.93 -0.34 0.71 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 2.05 5.31 -51.93 -0.28 1.77 16 33 H 0.27 7.77 5.96 -40.82 -0.24 7.52 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.60 5.92 -51.93 -0.31 1.30 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.22 6.99 -51.93 -0.36 0.86 16 40 H 0.34 4.78 8.80 -39.29 -0.35 4.43 16 LS Contribution 273.23 15.07 4.12 4.12 Total: -1.00 -27.53 273.23 -7.45 -34.97 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -5.88 Total: 10.51 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: -1.03 Total: -32.43 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.04 Total: -36.85 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -4.70 Total: 19.68 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.53 -7.45 -34.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309048617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.557 kcal (2) G-P(sol) polarization free energy of solvation -27.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds