Wall clock time and date at job start Mon Mar 30 2020 06:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52954 * 109.26933 * 182.13177 * 3 2 1 5 5 C 1.52999 * 109.52260 * 180.27722 * 4 3 2 6 6 H 1.09002 * 109.47471 * 299.97491 * 5 4 3 7 7 C 1.53006 * 109.47361 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.44850 * 59.97652 * 5 4 3 9 9 C 1.52995 * 109.44536 * 299.93054 * 8 5 4 10 10 H 1.09003 * 109.45656 * 300.05996 * 9 8 5 11 11 C 1.50694 * 109.46737 * 180.02562 * 9 8 5 12 12 H 1.08000 * 120.00563 * 239.96620 * 11 9 8 13 13 C 1.37885 * 119.99902 * 59.96784 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.53003 * 109.50250 * 60.06207 * 9 8 5 20 20 H 1.09002 * 109.52431 * 60.42497 * 19 9 8 21 21 C 1.53145 * 109.34665 * 180.45082 * 19 9 8 22 22 C 1.53122 * 109.13779 * 62.11708 * 21 19 9 23 23 C 1.53031 * 109.29881 * 57.66957 * 22 21 19 24 24 N 1.46823 * 109.42174 * 302.13701 * 3 2 1 25 25 H 4.44195 * 5.65183 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.46047 * 300.29320 * 4 3 2 27 27 H 1.09006 * 109.46324 * 60.26944 * 4 3 2 28 28 H 1.08999 * 109.47335 * 59.99849 * 7 5 4 29 29 H 1.08996 * 109.46954 * 180.02562 * 7 5 4 30 30 H 1.08997 * 109.46821 * 299.99949 * 7 5 4 31 31 H 1.08997 * 109.47911 * 179.97438 * 8 5 4 32 32 H 1.08998 * 109.47994 * 59.91591 * 8 5 4 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 34 34 H 1.09006 * 109.52592 * 182.01313 * 21 19 9 35 35 H 1.08992 * 109.53114 * 302.21456 * 21 19 9 36 36 H 1.09003 * 109.49931 * 177.61495 * 22 21 19 37 37 H 1.08996 * 109.50179 * 297.72229 * 22 21 19 38 38 H 1.09004 * 109.46262 * 60.86463 * 23 22 21 39 39 H 1.09002 * 109.46363 * 180.82777 * 23 22 21 40 40 H 1.00897 * 110.99886 * 294.10459 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1501 1.4437 0.0537 5 6 4.6801 1.4514 0.0470 6 1 5.0500 0.9057 0.9150 7 6 5.1831 2.8955 0.1001 8 6 5.1873 0.7811 -1.2314 9 6 4.6851 -0.6631 -1.2830 10 1 5.0555 -1.2075 -0.4143 11 6 5.1849 -1.3240 -2.5417 12 1 4.4818 -1.7120 -3.2638 13 6 6.5401 -1.4334 -2.7715 14 7 7.3964 -0.9606 -1.8924 15 14 7.1596 -2.2533 -4.3314 16 1 8.6446 -2.2435 -4.3395 17 1 6.6731 -3.6554 -4.3805 18 1 6.6538 -1.5121 -5.5146 19 6 3.1551 -0.6725 -1.2763 20 1 2.7837 -0.1348 -2.1486 21 6 2.6565 -2.1200 -1.3166 22 6 3.1385 -2.8521 -0.0611 23 6 2.6310 -2.1152 1.1804 24 7 3.1345 -0.7357 1.1725 25 1 -1.0502 -0.0004 -0.0002 26 1 2.7803 1.9901 -0.8140 27 1 2.7886 1.9211 0.9646 28 1 4.8214 3.3730 1.0107 29 1 6.2730 2.9009 0.0948 30 1 4.8132 3.4412 -0.7679 31 1 6.2772 0.7868 -1.2370 32 1 4.8160 1.3260 -2.0994 33 1 8.3497 -1.0379 -2.0539 34 1 1.5670 -2.1293 -1.3480 35 1 3.0517 -2.6170 -2.2024 36 1 2.7515 -3.8711 -0.0629 37 1 4.2282 -2.8763 -0.0497 38 1 1.5410 -2.1039 1.1758 39 1 2.9850 -2.6258 2.0760 40 1 2.8917 -0.2572 2.0270 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309048618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:37 Heat of formation + Delta-G solvation = 34.427378 kcal Electronic energy + Delta-G solvation = -19417.418191 eV Core-core repulsion = 16811.345638 eV Total energy + Delta-G solvation = -2606.072553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83923 -35.32408 -33.82651 -32.35277 -31.56301 -30.21030 -28.42775 -25.92387 -24.79954 -23.08562 -22.00537 -21.01027 -19.47983 -18.23483 -16.99409 -16.07666 -15.67347 -14.70888 -14.41906 -14.03222 -13.86765 -13.49021 -12.93701 -12.72947 -12.42840 -12.00822 -11.96265 -11.54208 -11.31003 -11.10698 -10.89555 -10.70916 -10.63398 -10.43948 -10.21550 -10.13197 -9.83461 -9.81065 -9.51897 -9.49327 -9.20246 -8.78255 -8.36297 -8.22758 -7.93800 -5.86018 -3.90562 3.10451 3.16768 3.37168 3.42117 3.44912 4.51331 4.61886 4.72359 5.40088 5.43004 5.48124 5.64932 5.70062 5.78556 5.90887 5.96378 6.05956 6.20522 6.23793 6.24495 6.32807 6.39746 6.47060 6.53263 6.68137 6.74305 6.80647 6.91703 6.97068 7.06115 7.12693 7.29311 7.50800 7.55926 7.70286 7.83139 7.88613 7.92354 8.28187 8.33632 8.61597 9.13260 9.72072 11.18914 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.009510 C = 0.007683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.713981 B = 2943.532313 C = 3643.733632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.177 4.177 3 C 0.223 3.777 4 C -0.090 4.090 5 C -0.087 4.087 6 H 0.075 0.925 7 C -0.143 4.143 8 C -0.103 4.103 9 C 0.065 3.935 10 H 0.049 0.951 11 C -0.508 4.508 12 H 0.051 0.949 13 C 0.063 3.937 14 N -0.887 5.887 15 Si 0.882 3.118 16 H -0.289 1.289 17 H -0.279 1.279 18 H -0.280 1.280 19 C -0.057 4.057 20 H 0.056 0.944 21 C -0.106 4.106 22 C -0.115 4.115 23 C 0.061 3.939 24 N -0.653 5.653 25 H 0.209 0.791 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.026 0.974 33 H 0.258 0.742 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.022 0.978 39 H 0.066 0.934 40 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.689 2.173 5.608 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.179 4.179 3 C 0.132 3.868 4 C -0.128 4.128 5 C -0.105 4.105 6 H 0.094 0.906 7 C -0.200 4.200 8 C -0.141 4.141 9 C 0.046 3.954 10 H 0.067 0.933 11 C -0.546 4.546 12 H 0.069 0.931 13 C -0.138 4.138 14 N -0.527 5.527 15 Si 0.711 3.289 16 H -0.215 1.215 17 H -0.205 1.205 18 H -0.206 1.206 19 C -0.076 4.076 20 H 0.074 0.926 21 C -0.144 4.144 22 C -0.153 4.153 23 C -0.068 4.068 24 N -0.282 5.282 25 H 0.226 0.774 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.846 2.006 5.352 9.707 hybrid contribution -0.990 -0.257 -0.666 1.220 sum -8.835 1.748 4.686 10.153 Atomic orbital electron populations 1.24841 0.95818 1.03016 1.02111 1.24867 0.95870 0.98198 0.99010 1.18376 0.79895 0.94892 0.93674 1.21562 0.97760 0.92935 1.00539 1.21160 0.92492 0.94912 1.01960 0.90636 1.21828 1.00980 0.97367 0.99830 1.21675 1.03647 0.96760 0.92047 1.18633 0.86329 0.92913 0.97489 0.93270 1.21214 0.91257 1.37011 1.05128 0.93064 1.24903 0.97084 0.95713 0.96089 1.69877 1.01753 1.46275 1.34761 0.86823 0.77594 0.80076 0.84424 1.21489 1.20516 1.20564 1.21242 1.00530 0.93721 0.92080 0.92553 1.21521 0.97454 0.96817 0.98568 1.21564 1.03258 0.96746 0.93711 1.21912 0.96288 0.89544 0.99086 1.60581 1.61618 1.02298 1.03669 0.77406 0.92090 0.93442 0.94315 0.92849 0.93692 0.88976 0.95517 0.93235 0.94769 0.90799 0.93195 0.89422 0.95980 0.91557 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.57 19.25 29.55 0.57 -3.00 16 2 C -0.18 -3.02 9.27 -37.12 -0.34 -3.36 16 3 C 0.22 4.01 0.48 -134.45 -0.06 3.94 16 4 C -0.09 -1.56 4.05 -26.76 -0.11 -1.67 16 5 C -0.09 -1.64 2.57 -90.62 -0.23 -1.87 16 6 H 0.08 1.50 7.63 -51.93 -0.40 1.11 16 7 C -0.14 -2.36 9.19 37.16 0.34 -2.02 16 8 C -0.10 -2.38 4.26 -26.73 -0.11 -2.49 16 9 C 0.06 1.53 1.18 -91.78 -0.11 1.43 16 10 H 0.05 1.29 5.97 -51.93 -0.31 0.98 16 11 C -0.51 -13.44 7.80 -34.44 -0.27 -13.71 16 12 H 0.05 1.36 6.74 -52.49 -0.35 1.00 16 13 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -24.86 11.32 55.43 0.63 -24.23 16 15 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.06 -1.18 1.48 -90.54 -0.13 -1.31 16 20 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 21 C -0.11 -2.08 5.05 -26.59 -0.13 -2.21 16 22 C -0.12 -2.09 5.73 -26.65 -0.15 -2.24 16 23 C 0.06 0.99 6.30 -3.83 -0.02 0.96 16 24 N -0.65 -11.12 4.84 -102.91 -0.50 -11.61 16 25 H 0.21 2.28 7.80 -54.08 -0.42 1.86 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.03 0.63 7.31 -51.93 -0.38 0.25 16 35 H 0.07 1.54 6.57 -51.93 -0.34 1.20 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.83 6.55 -51.93 -0.34 1.49 16 38 H 0.02 0.35 6.99 -51.93 -0.36 -0.01 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.33 4.98 8.78 -39.29 -0.34 4.64 16 LS Contribution 300.93 15.07 4.53 4.53 Total: -1.00 -27.43 300.93 -7.73 -35.17 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.51 Total: 5.93 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -0.87 Total: -25.95 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.13 Total: -35.85 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.43 -7.73 -35.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309048618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.592 kcal (2) G-P(sol) polarization free energy of solvation -27.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds