Wall clock time and date at job start Mon Mar 30 2020 06:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52954 * 109.26933 * 182.13177 * 3 2 1 5 5 C 1.52999 * 109.52260 * 180.27722 * 4 3 2 6 6 H 1.09002 * 109.47471 * 299.97491 * 5 4 3 7 7 C 1.53006 * 109.47361 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.44850 * 59.97652 * 5 4 3 9 9 C 1.52995 * 109.44536 * 299.93054 * 8 5 4 10 10 H 1.09003 * 109.45656 * 300.05996 * 9 8 5 11 11 C 1.50694 * 109.46737 * 180.02562 * 9 8 5 12 12 H 1.08000 * 120.00563 * 239.96620 * 11 9 8 13 13 C 1.37885 * 119.99902 * 59.96784 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.53003 * 109.50250 * 60.06207 * 9 8 5 20 20 H 1.09002 * 109.52431 * 60.42497 * 19 9 8 21 21 C 1.53145 * 109.34665 * 180.45082 * 19 9 8 22 22 C 1.53122 * 109.13779 * 62.11708 * 21 19 9 23 23 C 1.53031 * 109.29881 * 57.66957 * 22 21 19 24 24 N 1.46823 * 109.42174 * 302.13701 * 3 2 1 25 25 H 4.44195 * 5.65183 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.46047 * 300.29320 * 4 3 2 27 27 H 1.09006 * 109.46324 * 60.26944 * 4 3 2 28 28 H 1.08999 * 109.47335 * 59.99849 * 7 5 4 29 29 H 1.08996 * 109.46954 * 180.02562 * 7 5 4 30 30 H 1.08997 * 109.46821 * 299.99949 * 7 5 4 31 31 H 1.08997 * 109.47911 * 179.97438 * 8 5 4 32 32 H 1.08998 * 109.47994 * 59.91591 * 8 5 4 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 34 34 H 1.09006 * 109.52592 * 182.01313 * 21 19 9 35 35 H 1.08992 * 109.53114 * 302.21456 * 21 19 9 36 36 H 1.09003 * 109.49931 * 177.61495 * 22 21 19 37 37 H 1.08996 * 109.50179 * 297.72229 * 22 21 19 38 38 H 1.09004 * 109.46262 * 60.86463 * 23 22 21 39 39 H 1.09002 * 109.46363 * 180.82777 * 23 22 21 40 40 H 1.00897 * 110.99886 * 294.10459 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1501 1.4437 0.0537 5 6 4.6801 1.4514 0.0470 6 1 5.0500 0.9057 0.9150 7 6 5.1831 2.8955 0.1001 8 6 5.1873 0.7811 -1.2314 9 6 4.6851 -0.6631 -1.2830 10 1 5.0555 -1.2075 -0.4143 11 6 5.1849 -1.3240 -2.5417 12 1 4.4818 -1.7120 -3.2638 13 6 6.5401 -1.4334 -2.7715 14 7 7.3964 -0.9606 -1.8924 15 14 7.1596 -2.2533 -4.3314 16 1 8.6446 -2.2435 -4.3395 17 1 6.6731 -3.6554 -4.3805 18 1 6.6538 -1.5121 -5.5146 19 6 3.1551 -0.6725 -1.2763 20 1 2.7837 -0.1348 -2.1486 21 6 2.6565 -2.1200 -1.3166 22 6 3.1385 -2.8521 -0.0611 23 6 2.6310 -2.1152 1.1804 24 7 3.1345 -0.7357 1.1725 25 1 -1.0502 -0.0004 -0.0002 26 1 2.7803 1.9901 -0.8140 27 1 2.7886 1.9211 0.9646 28 1 4.8214 3.3730 1.0107 29 1 6.2730 2.9009 0.0948 30 1 4.8132 3.4412 -0.7679 31 1 6.2772 0.7868 -1.2370 32 1 4.8160 1.3260 -2.0994 33 1 8.3497 -1.0379 -2.0539 34 1 1.5670 -2.1293 -1.3480 35 1 3.0517 -2.6170 -2.2024 36 1 2.7515 -3.8711 -0.0629 37 1 4.2282 -2.8763 -0.0497 38 1 1.5410 -2.1039 1.1758 39 1 2.9850 -2.6258 2.0760 40 1 2.8917 -0.2572 2.0270 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309048618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:37 Heat of formation + Delta-G solvation = 19.478321 kcal Electronic energy + Delta-G solvation = -19418.066431 eV Core-core repulsion = 16811.345638 eV Total energy + Delta-G solvation = -2606.720793 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34029 -36.86963 -35.53617 -33.82517 -33.22119 -31.61286 -30.12038 -27.35476 -26.78141 -24.53637 -23.51220 -22.64077 -21.04594 -19.78232 -18.42259 -17.95597 -17.12572 -16.53837 -15.97223 -15.49578 -15.30940 -15.09760 -14.50919 -14.28395 -14.07048 -13.64277 -13.48013 -13.06912 -12.84847 -12.66150 -12.55977 -12.54905 -12.38958 -11.97090 -11.77364 -11.64031 -11.57741 -11.28846 -11.18259 -11.04141 -10.88012 -10.53696 -10.21537 -10.11403 -9.32485 -7.95433 -6.05871 1.42461 1.42920 1.49768 1.90435 1.95460 2.49446 3.30420 3.35984 3.49230 4.00178 4.01717 4.20433 4.30680 4.33539 4.49432 4.53101 4.67224 4.79082 4.80763 4.85784 4.96167 5.00886 5.04365 5.11045 5.13773 5.19660 5.27253 5.29531 5.39876 5.46938 5.53157 5.62057 5.75345 5.82540 5.90082 6.18252 6.33088 6.36734 6.55948 6.64321 6.74608 7.07334 7.58969 9.07420 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.009510 C = 0.007683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.713981 B = 2943.532313 C = 3643.733632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.227 4.227 3 C 0.229 3.771 4 C -0.085 4.085 5 C -0.079 4.079 6 H 0.065 0.935 7 C -0.138 4.138 8 C -0.098 4.098 9 C 0.070 3.930 10 H 0.023 0.977 11 C -0.521 4.521 12 H 0.043 0.957 13 C 0.016 3.984 14 N -0.912 5.912 15 Si 0.937 3.063 16 H -0.286 1.286 17 H -0.275 1.275 18 H -0.277 1.277 19 C -0.055 4.055 20 H 0.037 0.963 21 C -0.102 4.102 22 C -0.112 4.112 23 C 0.067 3.933 24 N -0.666 5.666 25 H 0.247 0.753 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.012 0.988 33 H 0.256 0.744 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.033 0.967 39 H 0.085 0.915 40 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.944 2.505 6.626 13.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.229 4.229 3 C 0.138 3.862 4 C -0.123 4.123 5 C -0.098 4.098 6 H 0.083 0.917 7 C -0.195 4.195 8 C -0.136 4.136 9 C 0.052 3.948 10 H 0.041 0.959 11 C -0.559 4.559 12 H 0.062 0.938 13 C -0.182 4.182 14 N -0.552 5.552 15 Si 0.764 3.236 16 H -0.212 1.212 17 H -0.201 1.201 18 H -0.203 1.203 19 C -0.074 4.074 20 H 0.055 0.945 21 C -0.140 4.140 22 C -0.150 4.150 23 C -0.062 4.062 24 N -0.296 5.296 25 H 0.263 0.737 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.104 0.896 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.110 2.339 6.373 12.178 hybrid contribution -0.334 -0.384 -1.008 1.129 sum -10.444 1.955 5.366 11.903 Atomic orbital electron populations 1.25696 0.96557 1.00263 0.99347 1.24646 0.95936 1.00748 1.01538 1.18006 0.81234 0.94630 0.92315 1.21507 0.95992 0.93093 1.01668 1.21004 0.94004 0.95893 0.98862 0.91671 1.21768 1.00405 0.95815 1.01502 1.21502 1.01391 0.96780 0.93900 1.18462 0.88686 0.92628 0.95011 0.95903 1.21572 0.91399 1.36871 1.06051 0.93836 1.25563 0.97429 0.96488 0.98713 1.70019 1.01690 1.47291 1.36187 0.85943 0.77044 0.79288 0.81309 1.21210 1.20056 1.20254 1.21072 0.98145 0.94751 0.93429 0.94466 1.21448 0.98118 0.96062 0.98362 1.21508 1.01007 0.98246 0.94252 1.21869 0.96780 0.89004 0.98547 1.60501 1.62242 1.02815 1.04050 0.73651 0.92438 0.90748 0.91366 0.93807 0.93319 0.92432 0.96957 0.93491 0.93258 0.93245 0.91074 0.92997 0.94855 0.89633 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.10 19.25 74.32 1.43 -3.67 16 2 C -0.23 -7.05 9.27 31.12 0.29 -6.77 16 3 C 0.23 7.97 0.48 1.73 0.00 7.97 16 4 C -0.08 -2.82 4.05 30.58 0.12 -2.70 16 5 C -0.08 -2.99 2.57 -10.79 -0.03 -3.01 16 6 H 0.06 2.60 7.63 -2.39 -0.02 2.58 16 7 C -0.14 -4.41 9.19 71.98 0.66 -3.75 16 8 C -0.10 -4.66 4.26 30.59 0.13 -4.53 16 9 C 0.07 3.48 1.18 -11.54 -0.01 3.47 16 10 H 0.02 1.25 5.97 -2.39 -0.01 1.24 16 11 C -0.52 -28.72 7.80 25.60 0.20 -28.52 16 12 H 0.04 2.40 6.74 -2.91 -0.02 2.38 16 13 C 0.02 0.91 5.30 84.66 0.45 1.36 16 14 N -0.91 -53.07 11.32 21.45 0.24 -52.83 16 15 Si 0.94 44.55 29.54 68.60 2.03 46.58 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 19 C -0.06 -2.31 1.48 -10.74 -0.02 -2.33 16 20 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 21 C -0.10 -4.02 5.05 30.68 0.15 -3.86 16 22 C -0.11 -4.04 5.73 30.65 0.18 -3.86 16 23 C 0.07 2.04 6.30 86.32 0.54 2.58 16 24 N -0.67 -21.73 4.84 -479.49 -2.32 -24.05 16 25 H 0.25 3.97 7.80 -4.41 -0.03 3.94 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.06 3.14 6.06 -2.39 -0.01 3.13 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.05 1.76 7.31 -2.38 -0.02 1.75 16 35 H 0.05 2.13 6.57 -2.39 -0.02 2.11 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 37 H 0.05 2.24 6.55 -2.39 -0.02 2.22 16 38 H 0.03 0.96 6.99 -2.39 -0.02 0.94 16 39 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.35 9.56 8.78 -89.70 -0.79 8.77 16 Total: -1.00 -61.24 300.93 4.27 -56.96 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.22 Total: 20.96 kcal Atomic # 6 Polarization: -51.72 SS G_CDS: 4.10 Total: -47.62 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -2.08 Total: -76.88 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -61.24 4.27 -56.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309048618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.443 kcal (2) G-P(sol) polarization free energy of solvation -61.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds