Wall clock time and date at job start Mon Mar 30 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53011 * 109.48767 * 231.14739 * 3 2 1 5 5 C 1.52996 * 109.51201 * 299.72602 * 4 3 2 6 6 H 1.08997 * 109.47983 * 179.88405 * 5 4 3 7 7 C 1.52996 * 109.48576 * 59.84683 * 5 4 3 8 8 C 1.53018 * 109.41409 * 299.86007 * 5 4 3 9 9 C 1.52996 * 109.37924 * 60.23738 * 8 5 4 10 10 H 1.08998 * 109.55188 * 59.99336 * 9 8 5 11 11 C 1.50692 * 109.39102 * 179.97438 * 9 8 5 12 12 H 1.08003 * 120.00653 * 119.99152 * 11 9 8 13 13 C 1.37883 * 119.99989 * 299.99922 * 11 9 8 14 14 N 1.31504 * 119.99900 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99880 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47067 * 89.99755 * 15 13 11 17 17 H 1.48501 * 109.47130 * 209.99307 * 15 13 11 18 18 H 1.48497 * 109.47273 * 329.99732 * 15 13 11 19 19 C 1.52914 * 109.51468 * 299.93075 * 9 8 5 20 20 H 1.09000 * 109.39808 * 179.82986 * 19 9 8 21 21 C 1.53200 * 109.66284 * 299.86741 * 19 9 8 22 22 C 1.53149 * 109.14865 * 177.90646 * 21 19 9 23 23 C 1.53027 * 109.28440 * 302.42355 * 22 21 19 24 24 N 1.46849 * 109.57737 * 59.09767 * 23 22 21 25 25 H 4.44693 * 5.63274 * 179.97438 * 4 1 2 26 26 H 1.08992 * 109.46579 * 179.70877 * 4 3 2 27 27 H 1.09000 * 109.45625 * 59.72632 * 4 3 2 28 28 H 1.08997 * 109.47102 * 40.12265 * 7 5 4 29 29 H 1.08992 * 109.47633 * 160.13036 * 7 5 4 30 30 H 1.09005 * 109.46727 * 280.12875 * 7 5 4 31 31 H 1.09007 * 109.47427 * 180.13291 * 8 5 4 32 32 H 1.08998 * 109.47937 * 300.15931 * 8 5 4 33 33 H 0.97006 * 120.00066 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.51982 * 58.00570 * 21 19 9 35 35 H 1.09008 * 109.57324 * 297.83936 * 21 19 9 36 36 H 1.09000 * 109.50307 * 182.47827 * 22 21 19 37 37 H 1.09003 * 109.52984 * 62.38362 * 22 21 19 38 38 H 1.09002 * 109.45010 * 299.06839 * 23 22 21 39 39 H 1.08999 * 109.43523 * 179.12633 * 23 22 21 40 40 H 1.00900 * 111.00015 * 174.17685 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1560 0.9058 1.1233 5 6 2.6517 2.3327 0.8987 6 1 3.0136 2.9765 1.7002 7 6 1.1218 2.3380 0.8910 8 6 3.1706 2.8498 -0.4448 9 6 2.6569 1.9478 -1.5687 10 1 1.5670 1.9549 -1.5728 11 6 3.1672 2.4572 -2.8919 12 1 3.7859 1.8252 -3.5118 13 6 2.8444 3.7305 -3.3113 14 7 2.0909 4.5000 -2.5567 15 14 3.4764 4.3617 -4.9518 16 1 2.4990 4.0302 -6.0195 17 1 3.6517 5.8347 -4.8812 18 1 4.7809 3.7221 -5.2591 19 6 3.1562 0.5197 -1.3460 20 1 2.7867 -0.1219 -2.1460 21 6 4.6881 0.5033 -1.3456 22 6 5.1752 -0.9222 -1.0698 23 6 4.6039 -1.4019 0.2663 24 7 3.1367 -1.3672 0.2150 25 1 -1.0502 0.0000 -0.0003 26 1 4.2459 0.9019 1.1263 27 1 2.7888 0.5375 2.0813 28 1 0.7523 1.6648 1.6646 29 1 0.7609 3.3479 1.0855 30 1 0.7622 2.0048 -0.0826 31 1 2.8138 3.8674 -0.6048 32 1 4.2605 2.8432 -0.4404 33 1 1.8635 5.3956 -2.8519 34 1 5.0592 1.1718 -0.5688 35 1 5.0571 0.8329 -2.3169 36 1 6.2642 -0.9323 -1.0245 37 1 4.8380 -1.5833 -1.8681 38 1 4.9547 -0.7496 1.0662 39 1 4.9365 -2.4221 0.4577 40 1 2.7361 -1.7681 1.0498 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309048619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:40 Heat of formation + Delta-G solvation = 53.299546 kcal Electronic energy + Delta-G solvation = -19668.278569 eV Core-core repulsion = 17063.024375 eV Total energy + Delta-G solvation = -2605.254194 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33896 -35.59968 -33.88778 -32.12927 -31.48756 -30.22081 -28.30013 -25.79493 -24.87622 -23.68729 -22.53414 -20.51410 -19.63897 -18.48161 -16.49118 -16.06969 -15.59752 -15.06573 -14.60275 -14.14961 -13.85141 -13.37979 -12.98829 -12.66007 -12.60794 -12.22918 -12.14033 -11.82282 -11.48162 -11.03366 -10.88072 -10.70066 -10.65000 -10.41252 -10.35141 -10.16527 -9.95716 -9.58046 -9.47051 -9.14928 -8.97994 -8.84027 -8.58940 -8.16102 -7.93261 -5.92538 -3.97402 3.33044 3.34844 3.40046 3.42692 3.46338 4.47015 4.57311 4.94262 5.31173 5.34026 5.41749 5.44226 5.58410 5.70506 5.81714 5.89057 6.01839 6.12425 6.21754 6.25022 6.32244 6.41063 6.46048 6.47121 6.60795 6.66325 6.77907 6.92167 6.98480 7.05191 7.12557 7.20080 7.26727 7.40996 7.63887 7.69357 7.82150 8.09195 8.21531 8.24848 8.52674 9.05447 9.65934 11.12836 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023228 B = 0.009612 C = 0.007985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.173002 B = 2912.364185 C = 3505.568273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.126 4.126 3 C 0.227 3.773 4 C -0.133 4.133 5 C -0.089 4.089 6 H 0.047 0.953 7 C -0.154 4.154 8 C -0.107 4.107 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.507 4.507 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.888 5.888 15 Si 0.886 3.114 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.275 1.275 19 C -0.055 4.055 20 H 0.062 0.938 21 C -0.109 4.109 22 C -0.122 4.122 23 C 0.059 3.941 24 N -0.679 5.679 25 H 0.211 0.789 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.036 0.964 33 H 0.258 0.742 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.032 0.968 39 H 0.066 0.934 40 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.174 -7.922 7.153 10.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.127 4.127 3 C 0.137 3.863 4 C -0.172 4.172 5 C -0.108 4.108 6 H 0.065 0.935 7 C -0.211 4.211 8 C -0.145 4.145 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.546 4.546 12 H 0.074 0.926 13 C -0.139 4.139 14 N -0.527 5.527 15 Si 0.714 3.286 16 H -0.209 1.209 17 H -0.214 1.214 18 H -0.200 1.200 19 C -0.074 4.074 20 H 0.080 0.920 21 C -0.147 4.147 22 C -0.159 4.159 23 C -0.070 4.070 24 N -0.308 5.308 25 H 0.228 0.772 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.104 -7.932 6.484 10.458 hybrid contribution 0.245 0.847 0.085 0.886 sum 2.349 -7.085 6.569 9.943 Atomic orbital electron populations 1.24597 0.95646 1.02297 1.02293 1.22415 0.93532 0.97920 0.98826 1.18008 0.83946 0.86877 0.97494 1.22277 1.00834 0.97320 0.96768 1.21133 0.95967 0.93913 0.99781 0.93452 1.22423 0.95872 0.99883 1.02914 1.21702 0.98022 1.03524 0.91235 1.18707 0.96534 0.87505 0.93614 0.94689 1.21199 1.31330 0.98832 1.03198 0.92621 1.24934 0.95195 0.97036 0.96751 1.69882 1.37182 1.08878 1.36797 0.86699 0.79266 0.77919 0.84722 1.20863 1.21423 1.20016 1.21179 0.94384 0.99608 0.92196 0.91959 1.21678 0.96121 0.94214 1.02649 1.21693 0.98813 0.98567 0.96869 1.21931 0.87575 0.99872 0.97641 1.60544 1.07131 1.19809 1.43354 0.77229 0.91222 0.93603 0.94622 0.94246 0.89569 0.88930 0.94552 0.93206 0.92106 0.90789 0.92427 0.91684 0.94956 0.91528 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.93 16.66 29.55 0.49 -3.44 16 2 C -0.13 -2.36 7.92 -37.12 -0.29 -2.66 16 3 C 0.23 4.11 0.63 -134.38 -0.08 4.02 16 4 C -0.13 -2.31 3.82 -26.73 -0.10 -2.42 16 5 C -0.09 -1.74 3.20 -90.61 -0.29 -2.03 16 6 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 7 C -0.15 -3.01 7.29 37.16 0.27 -2.74 16 8 C -0.11 -2.46 4.24 -26.72 -0.11 -2.57 16 9 C 0.05 1.32 1.54 -91.82 -0.14 1.18 16 10 H 0.04 0.94 5.56 -51.93 -0.29 0.66 16 11 C -0.51 -13.52 7.86 -34.44 -0.27 -13.80 16 12 H 0.06 1.47 6.71 -52.48 -0.35 1.12 16 13 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 14 N -0.89 -24.98 11.31 55.43 0.63 -24.36 16 15 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.05 -1.13 1.59 -90.55 -0.14 -1.28 16 20 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 21 C -0.11 -2.04 4.40 -26.55 -0.12 -2.16 16 22 C -0.12 -1.86 6.10 -26.64 -0.16 -2.02 16 23 C 0.06 0.82 6.25 -3.84 -0.02 0.80 16 24 N -0.68 -10.71 6.28 -102.83 -0.65 -11.35 16 25 H 0.21 2.81 7.80 -54.08 -0.42 2.39 16 26 H 0.07 1.17 4.78 -51.93 -0.25 0.93 16 27 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.03 0.63 6.86 -51.93 -0.36 0.27 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.86 3.03 -51.93 -0.16 1.70 16 31 H 0.09 2.42 6.06 -51.92 -0.31 2.11 16 32 H 0.04 0.83 6.41 -51.93 -0.33 0.49 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.06 1.14 4.85 -51.93 -0.25 0.89 16 35 H 0.07 1.49 6.70 -51.92 -0.35 1.14 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.03 0.44 6.17 -51.93 -0.32 0.12 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.33 4.69 8.77 -39.29 -0.34 4.35 16 LS Contribution 284.23 15.07 4.28 4.28 Total: -1.00 -27.85 284.23 -7.66 -35.51 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.83 Total: 7.28 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: -1.07 Total: -27.52 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.02 Total: -35.71 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.85 -7.66 -35.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309048619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.807 kcal (2) G-P(sol) polarization free energy of solvation -27.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds