Wall clock time and date at job start Mon Mar 30 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53011 * 109.48767 * 231.14739 * 3 2 1 5 5 C 1.52996 * 109.51201 * 299.72602 * 4 3 2 6 6 H 1.08997 * 109.47983 * 179.88405 * 5 4 3 7 7 C 1.52996 * 109.48576 * 59.84683 * 5 4 3 8 8 C 1.53018 * 109.41409 * 299.86007 * 5 4 3 9 9 C 1.52996 * 109.37924 * 60.23738 * 8 5 4 10 10 H 1.08998 * 109.55188 * 59.99336 * 9 8 5 11 11 C 1.50692 * 109.39102 * 179.97438 * 9 8 5 12 12 H 1.08003 * 120.00653 * 119.99152 * 11 9 8 13 13 C 1.37883 * 119.99989 * 299.99922 * 11 9 8 14 14 N 1.31504 * 119.99900 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99880 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47067 * 89.99755 * 15 13 11 17 17 H 1.48501 * 109.47130 * 209.99307 * 15 13 11 18 18 H 1.48497 * 109.47273 * 329.99732 * 15 13 11 19 19 C 1.52914 * 109.51468 * 299.93075 * 9 8 5 20 20 H 1.09000 * 109.39808 * 179.82986 * 19 9 8 21 21 C 1.53200 * 109.66284 * 299.86741 * 19 9 8 22 22 C 1.53149 * 109.14865 * 177.90646 * 21 19 9 23 23 C 1.53027 * 109.28440 * 302.42355 * 22 21 19 24 24 N 1.46849 * 109.57737 * 59.09767 * 23 22 21 25 25 H 4.44693 * 5.63274 * 179.97438 * 4 1 2 26 26 H 1.08992 * 109.46579 * 179.70877 * 4 3 2 27 27 H 1.09000 * 109.45625 * 59.72632 * 4 3 2 28 28 H 1.08997 * 109.47102 * 40.12265 * 7 5 4 29 29 H 1.08992 * 109.47633 * 160.13036 * 7 5 4 30 30 H 1.09005 * 109.46727 * 280.12875 * 7 5 4 31 31 H 1.09007 * 109.47427 * 180.13291 * 8 5 4 32 32 H 1.08998 * 109.47937 * 300.15931 * 8 5 4 33 33 H 0.97006 * 120.00066 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.51982 * 58.00570 * 21 19 9 35 35 H 1.09008 * 109.57324 * 297.83936 * 21 19 9 36 36 H 1.09000 * 109.50307 * 182.47827 * 22 21 19 37 37 H 1.09003 * 109.52984 * 62.38362 * 22 21 19 38 38 H 1.09002 * 109.45010 * 299.06839 * 23 22 21 39 39 H 1.08999 * 109.43523 * 179.12633 * 23 22 21 40 40 H 1.00900 * 111.00015 * 174.17685 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1560 0.9058 1.1233 5 6 2.6517 2.3327 0.8987 6 1 3.0136 2.9765 1.7002 7 6 1.1218 2.3380 0.8910 8 6 3.1706 2.8498 -0.4448 9 6 2.6569 1.9478 -1.5687 10 1 1.5670 1.9549 -1.5728 11 6 3.1672 2.4572 -2.8919 12 1 3.7859 1.8252 -3.5118 13 6 2.8444 3.7305 -3.3113 14 7 2.0909 4.5000 -2.5567 15 14 3.4764 4.3617 -4.9518 16 1 2.4990 4.0302 -6.0195 17 1 3.6517 5.8347 -4.8812 18 1 4.7809 3.7221 -5.2591 19 6 3.1562 0.5197 -1.3460 20 1 2.7867 -0.1219 -2.1460 21 6 4.6881 0.5033 -1.3456 22 6 5.1752 -0.9222 -1.0698 23 6 4.6039 -1.4019 0.2663 24 7 3.1367 -1.3672 0.2150 25 1 -1.0502 0.0000 -0.0003 26 1 4.2459 0.9019 1.1263 27 1 2.7888 0.5375 2.0813 28 1 0.7523 1.6648 1.6646 29 1 0.7609 3.3479 1.0855 30 1 0.7622 2.0048 -0.0826 31 1 2.8138 3.8674 -0.6048 32 1 4.2605 2.8432 -0.4404 33 1 1.8635 5.3956 -2.8519 34 1 5.0592 1.1718 -0.5688 35 1 5.0571 0.8329 -2.3169 36 1 6.2642 -0.9323 -1.0245 37 1 4.8380 -1.5833 -1.8681 38 1 4.9547 -0.7496 1.0662 39 1 4.9365 -2.4221 0.4577 40 1 2.7361 -1.7681 1.0498 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309048619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:40 Heat of formation + Delta-G solvation = 36.843811 kcal Electronic energy + Delta-G solvation = -19668.992144 eV Core-core repulsion = 17063.024375 eV Total energy + Delta-G solvation = -2605.967769 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.83306 -37.05828 -35.57330 -33.85217 -33.02090 -31.63786 -29.92612 -27.33770 -26.82845 -25.14544 -23.95237 -22.19374 -21.13778 -19.87052 -18.36366 -17.66136 -17.01103 -16.58932 -16.31552 -15.74197 -15.48739 -14.85044 -14.42712 -14.27328 -14.04341 -13.94103 -13.54187 -13.33794 -13.10989 -12.85252 -12.57024 -12.42076 -12.22157 -12.07633 -11.91379 -11.73973 -11.64135 -11.21736 -11.00896 -10.78754 -10.69517 -10.45471 -10.33653 -10.14131 -9.20437 -8.01839 -6.13076 1.39789 1.41483 1.50337 2.00544 2.07031 2.45704 3.24361 3.31250 3.63134 3.91829 3.98827 4.17735 4.24416 4.35623 4.42796 4.50860 4.55376 4.69624 4.80730 4.88147 4.91260 4.94722 5.00269 5.06250 5.11218 5.21143 5.25242 5.32652 5.35313 5.42370 5.52982 5.56218 5.64585 5.73085 5.79622 6.10240 6.17060 6.30225 6.47866 6.58703 6.88315 6.98328 7.52826 9.01586 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023228 B = 0.009612 C = 0.007985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.173002 B = 2912.364185 C = 3505.568273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.167 4.167 3 C 0.232 3.768 4 C -0.125 4.125 5 C -0.088 4.088 6 H 0.061 0.939 7 C -0.146 4.146 8 C -0.097 4.097 9 C 0.059 3.941 10 H 0.001 0.999 11 C -0.523 4.523 12 H 0.049 0.951 13 C 0.015 3.985 14 N -0.913 5.913 15 Si 0.943 3.057 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.269 1.269 19 C -0.050 4.050 20 H 0.033 0.967 21 C -0.106 4.106 22 C -0.116 4.116 23 C 0.059 3.941 24 N -0.683 5.683 25 H 0.240 0.760 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.257 0.743 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.097 0.903 40 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 -9.419 8.472 13.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C 0.142 3.858 4 C -0.164 4.164 5 C -0.107 4.107 6 H 0.079 0.921 7 C -0.203 4.203 8 C -0.135 4.135 9 C 0.040 3.960 10 H 0.019 0.981 11 C -0.561 4.561 12 H 0.067 0.933 13 C -0.184 4.184 14 N -0.553 5.553 15 Si 0.769 3.231 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.193 1.193 19 C -0.069 4.069 20 H 0.052 0.948 21 C -0.143 4.143 22 C -0.154 4.154 23 C -0.070 4.070 24 N -0.314 5.314 25 H 0.256 0.744 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.115 0.885 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.908 -9.447 7.807 12.596 hybrid contribution -0.058 1.311 -0.373 1.365 sum 2.850 -8.135 7.434 11.383 Atomic orbital electron populations 1.25411 0.96592 1.00978 1.00724 1.22839 0.94371 0.99260 1.00258 1.17773 0.83943 0.88334 0.95771 1.22215 1.01313 0.95303 0.97559 1.21090 0.95970 0.95829 0.97850 0.92106 1.22329 0.95897 0.99733 1.02365 1.21470 0.97509 1.01364 0.93150 1.18562 0.94366 0.90026 0.93005 0.98102 1.21565 1.31050 0.98956 1.04524 0.93254 1.25625 0.95579 0.97389 0.99768 1.70027 1.38170 1.08961 1.38133 0.85794 0.78886 0.77350 0.81050 1.20714 1.21110 1.19336 1.20979 0.95799 0.96775 0.93385 0.94827 1.21593 0.94535 0.96866 1.01315 1.21660 1.00442 0.95614 0.97699 1.22033 0.86316 1.01872 0.96764 1.60463 1.08388 1.18106 1.44436 0.74376 0.90354 0.91212 0.92417 0.95129 0.91734 0.92564 0.94969 0.93408 0.92179 0.93216 0.89840 0.92424 0.93920 0.88480 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.20 16.66 74.32 1.24 -5.96 16 2 C -0.17 -6.06 7.92 31.12 0.25 -5.82 16 3 C 0.23 8.10 0.63 1.73 0.00 8.11 16 4 C -0.12 -4.05 3.82 30.60 0.12 -3.94 16 5 C -0.09 -3.38 3.20 -10.79 -0.03 -3.42 16 6 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 7 C -0.15 -5.65 7.29 71.98 0.52 -5.13 16 8 C -0.10 -4.56 4.24 30.60 0.13 -4.43 16 9 C 0.06 2.94 1.54 -11.57 -0.02 2.92 16 10 H 0.00 0.06 5.56 -2.39 -0.01 0.05 16 11 C -0.52 -28.87 7.86 25.60 0.20 -28.67 16 12 H 0.05 2.71 6.71 -2.91 -0.02 2.69 16 13 C 0.01 0.82 5.30 84.66 0.45 1.27 16 14 N -0.91 -53.08 11.31 21.45 0.24 -52.84 16 15 Si 0.94 44.35 29.54 68.60 2.03 46.38 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 C -0.05 -2.11 1.59 -10.75 -0.02 -2.13 16 20 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 21 C -0.11 -3.91 4.40 30.71 0.14 -3.78 16 22 C -0.12 -3.29 6.10 30.65 0.19 -3.10 16 23 C 0.06 1.43 6.25 86.32 0.54 1.97 16 24 N -0.68 -19.71 6.28 -479.25 -3.01 -22.73 16 25 H 0.24 5.90 7.80 -4.41 -0.03 5.86 16 26 H 0.08 2.41 4.78 -2.39 -0.01 2.40 16 27 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 28 H 0.06 1.93 6.86 -2.39 -0.02 1.91 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 2.81 3.03 -2.38 -0.01 2.80 16 31 H 0.06 3.05 6.06 -2.38 -0.01 3.04 16 32 H 0.03 1.49 6.41 -2.39 -0.02 1.47 16 33 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 34 H 0.06 2.21 4.85 -2.39 -0.01 2.20 16 35 H 0.05 2.04 6.70 -2.38 -0.02 2.02 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.04 0.99 6.17 -2.39 -0.01 0.97 16 39 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.35 8.56 8.77 -89.69 -0.79 7.78 16 Total: -1.00 -61.92 284.23 3.21 -58.71 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.25 Total: 22.57 kcal Atomic # 6 Polarization: -55.79 SS G_CDS: 3.70 Total: -52.09 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -2.77 Total: -75.57 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.92 3.21 -58.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309048619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.558 kcal (2) G-P(sol) polarization free energy of solvation -61.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds