Wall clock time and date at job start Mon Mar 30 2020 06:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47434 * 2 1 4 4 C 1.50696 * 109.46929 * 239.99763 * 2 1 3 5 5 H 1.07995 * 120.00355 * 275.00107 * 4 2 1 6 6 C 1.37878 * 119.99819 * 95.00487 * 4 2 1 7 7 N 1.31519 * 120.00021 * 184.91088 * 6 4 2 8 8 Si 1.86797 * 120.00311 * 4.91264 * 6 4 2 9 9 H 1.48499 * 109.47232 * 84.82701 * 8 6 4 10 10 H 1.48498 * 109.47455 * 204.83172 * 8 6 4 11 11 H 1.48499 * 109.46740 * 324.83215 * 8 6 4 12 12 N 1.46901 * 109.47156 * 119.99980 * 2 1 3 13 13 C 1.46902 * 110.99921 * 275.00277 * 12 2 1 14 14 C 1.53001 * 109.46913 * 179.97438 * 13 12 2 15 15 H 1.09000 * 109.47396 * 54.99735 * 14 13 12 16 16 C 1.52992 * 109.47121 * 294.99384 * 14 13 12 17 17 C 1.53000 * 109.46894 * 174.99428 * 14 13 12 18 18 C 1.50700 * 109.47172 * 184.99527 * 17 14 13 19 19 C 1.38237 * 119.99614 * 90.00139 * 18 17 14 20 20 C 1.38231 * 119.99835 * 180.27620 * 19 18 17 21 21 C 1.38237 * 119.99933 * 359.49267 * 20 19 18 22 22 C 1.38228 * 120.00255 * 0.50742 * 21 20 19 23 23 C 1.38227 * 120.00427 * 270.02396 * 18 17 14 24 24 H 1.08994 * 109.47138 * 175.05211 * 1 2 3 25 25 H 1.09002 * 109.47092 * 295.05574 * 1 2 3 26 26 H 1.09006 * 109.46726 * 55.05049 * 1 2 3 27 27 H 0.97001 * 120.00410 * 180.02562 * 7 6 4 28 28 H 1.00896 * 111.00379 * 151.04069 * 12 2 1 29 29 H 1.08998 * 109.47432 * 59.99285 * 13 12 2 30 30 H 1.09002 * 109.46734 * 299.99381 * 13 12 2 31 31 H 1.09000 * 109.47297 * 60.00332 * 16 14 13 32 32 H 1.08998 * 109.47408 * 180.02562 * 16 14 13 33 33 H 1.09000 * 109.47272 * 300.00427 * 16 14 13 34 34 H 1.09004 * 109.46840 * 65.00123 * 17 14 13 35 35 H 1.09000 * 109.47535 * 305.00231 * 17 14 13 36 36 H 1.08004 * 120.00278 * 0.02562 * 19 18 17 37 37 H 1.08004 * 120.00013 * 179.72599 * 20 19 18 38 38 H 1.08006 * 119.99982 * 180.23214 * 21 20 19 39 39 H 1.07994 * 120.00534 * 179.71706 * 22 21 20 40 40 H 1.08001 * 119.99942 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1354 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3136 1.8790 -2.3175 9 1 3.5991 2.3948 -1.7821 10 1 2.1059 2.3990 -3.6928 11 1 1.1987 2.3274 -1.4451 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5332 3.5745 15 1 3.5506 -1.0020 3.3397 16 6 1.5824 -1.6096 3.9702 17 6 2.7790 0.4457 4.7359 18 6 3.3987 -0.2739 5.9060 19 6 4.7740 -0.3261 6.0356 20 6 5.3426 -0.9910 7.1058 21 6 4.5358 -1.5949 8.0520 22 6 3.1606 -1.5428 7.9225 23 6 2.5921 -0.8823 6.8494 24 1 -0.3633 -1.0238 -0.0886 25 1 -0.3633 0.4352 0.9310 26 1 -0.3633 0.5887 -0.8424 27 1 2.9371 -0.1050 -4.2554 28 1 2.9173 -1.1206 1.0288 29 1 1.0871 0.6164 2.5525 30 1 2.7589 1.0462 2.1182 31 1 1.4513 -2.3069 3.1428 32 1 1.9473 -2.1477 4.8450 33 1 0.6268 -1.1407 4.2050 34 1 1.8092 0.8479 5.0291 35 1 3.4313 1.2612 4.4239 36 1 5.4043 0.1493 5.2986 37 1 6.4172 -1.0355 7.2047 38 1 4.9801 -2.1112 8.8902 39 1 2.5303 -2.0184 8.6592 40 1 1.5176 -0.8422 6.7477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309336037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:57 Heat of formation + Delta-G solvation = 1.122032 kcal Electronic energy + Delta-G solvation = -17498.682773 eV Core-core repulsion = 14891.165992 eV Total energy + Delta-G solvation = -2607.516781 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51127 -36.98844 -34.76220 -32.31161 -31.05564 -30.91100 -28.66028 -26.68095 -25.37415 -24.13492 -22.60591 -21.37235 -19.84788 -19.55290 -16.98723 -16.77961 -15.45880 -15.29389 -15.07178 -14.48803 -14.12028 -13.76301 -13.57838 -13.39049 -12.81292 -12.65887 -12.43876 -12.17094 -12.11615 -11.69929 -11.34866 -11.18763 -11.01902 -10.98102 -10.81605 -10.62753 -10.43977 -10.28101 -10.10605 -9.74520 -8.99479 -8.96995 -8.69729 -8.58456 -7.36252 -6.11443 -4.11796 1.30286 1.33039 3.24356 3.33423 3.35714 3.71717 4.37792 4.69961 4.77343 4.90714 5.02337 5.07900 5.14168 5.26977 5.38955 5.45681 5.49332 5.63932 5.73861 5.87287 5.97255 6.00626 6.02981 6.13044 6.27002 6.35402 6.40283 6.43318 6.44576 6.57154 6.64416 6.69801 6.74310 6.86152 6.92314 6.95764 7.43482 7.64602 8.00761 8.43665 8.68354 8.98359 9.53049 11.01702 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038639 B = 0.004147 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.486325 B = 6750.926972 C = 6936.337225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.179 3.821 3 H 0.002 0.998 4 C -0.518 4.518 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.266 1.266 12 N -0.682 5.682 13 C 0.061 3.939 14 C -0.081 4.081 15 H 0.068 0.932 16 C -0.137 4.137 17 C -0.080 4.080 18 C -0.068 4.068 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.121 4.121 23 C -0.115 4.115 24 H 0.050 0.950 25 H 0.019 0.981 26 H 0.039 0.961 27 H 0.264 0.736 28 H 0.339 0.661 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 1.398 21.215 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.071 3.929 3 H 0.020 0.980 4 C -0.556 4.556 5 H 0.097 0.903 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.704 3.296 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.190 1.190 12 N -0.314 5.314 13 C -0.069 4.069 14 C -0.100 4.100 15 H 0.086 0.914 16 C -0.194 4.194 17 C -0.118 4.118 18 C -0.068 4.068 19 C -0.137 4.137 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.139 4.139 23 C -0.133 4.133 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.157 0.843 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.308 1.179 21.167 21.240 hybrid contribution 0.829 1.560 -0.367 1.804 sum 2.137 2.739 20.800 21.088 Atomic orbital electron populations 1.21832 0.98195 1.00611 0.97604 1.19551 0.92379 0.92428 0.88528 0.98018 1.21096 1.43506 0.95894 0.95108 0.90266 1.25036 0.94449 0.98164 0.95349 1.69905 1.46151 1.35775 1.01654 0.86882 0.78939 0.86643 0.77177 1.20402 1.21422 1.19033 1.60653 1.32929 1.32689 1.05088 1.22007 0.99481 0.93979 0.91388 1.21095 0.99667 0.95866 0.93345 0.91393 1.21758 0.97843 0.98715 1.01111 1.20725 1.00725 0.97521 0.92821 1.19946 0.93492 0.97605 0.95806 1.21098 0.94563 0.99916 0.98146 1.21126 0.99665 0.98132 0.94871 1.21095 0.93904 1.00552 0.99379 1.21128 0.95061 0.99606 0.98149 1.21089 0.99802 0.98104 0.94326 0.93038 0.96148 0.94217 0.92597 0.84309 0.91951 0.96535 0.91143 0.93610 0.93485 0.91018 0.91176 0.86151 0.86336 0.86484 0.86354 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 9.42 37.16 0.35 -2.40 16 2 C 0.18 4.25 2.26 -68.86 -0.16 4.10 16 3 H 0.00 0.05 4.95 -51.93 -0.26 -0.20 16 4 C -0.52 -14.45 8.84 -34.44 -0.30 -14.75 16 5 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 8 Si 0.88 21.57 26.99 -169.99 -4.59 16.98 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.32 6.82 56.52 0.39 -5.94 16 12 N -0.68 -13.91 5.76 -107.95 -0.62 -14.53 16 13 C 0.06 1.04 4.87 -3.82 -0.02 1.02 16 14 C -0.08 -1.12 2.52 -90.62 -0.23 -1.35 16 15 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.14 -1.87 8.65 37.15 0.32 -1.55 16 17 C -0.08 -0.95 4.84 -27.88 -0.13 -1.08 16 18 C -0.07 -0.79 4.71 -104.63 -0.49 -1.28 16 19 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 20 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 21 C -0.13 -1.27 10.05 -39.59 -0.40 -1.67 16 22 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 23 C -0.12 -1.25 7.96 -39.58 -0.32 -1.56 16 24 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.02 0.39 7.35 -51.93 -0.38 0.01 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.34 7.05 8.35 -39.29 -0.33 6.72 16 29 H 0.06 1.05 7.36 -51.93 -0.38 0.67 16 30 H 0.02 0.29 8.06 -51.93 -0.42 -0.13 16 31 H 0.07 1.09 7.75 -51.93 -0.40 0.69 16 32 H 0.04 0.58 6.26 -51.93 -0.33 0.25 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 36 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 1.18 8.04 -52.49 -0.42 0.76 16 LS Contribution 322.59 15.07 4.86 4.86 Total: -1.00 -29.67 322.59 -8.94 -38.61 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.71 Total: 4.04 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -2.65 Total: -23.48 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.15 Total: -41.01 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.59 Total: 16.98 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.67 -8.94 -38.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309336037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.734 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds