Wall clock time and date at job start Mon Mar 30 2020 06:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47434 * 2 1 4 4 C 1.50696 * 109.46929 * 239.99763 * 2 1 3 5 5 H 1.07995 * 120.00355 * 275.00107 * 4 2 1 6 6 C 1.37878 * 119.99819 * 95.00487 * 4 2 1 7 7 N 1.31519 * 120.00021 * 184.91088 * 6 4 2 8 8 Si 1.86797 * 120.00311 * 4.91264 * 6 4 2 9 9 H 1.48499 * 109.47232 * 84.82701 * 8 6 4 10 10 H 1.48498 * 109.47455 * 204.83172 * 8 6 4 11 11 H 1.48499 * 109.46740 * 324.83215 * 8 6 4 12 12 N 1.46901 * 109.47156 * 119.99980 * 2 1 3 13 13 C 1.46902 * 110.99921 * 275.00277 * 12 2 1 14 14 C 1.53001 * 109.46913 * 179.97438 * 13 12 2 15 15 H 1.09000 * 109.47396 * 54.99735 * 14 13 12 16 16 C 1.52992 * 109.47121 * 294.99384 * 14 13 12 17 17 C 1.53000 * 109.46894 * 174.99428 * 14 13 12 18 18 C 1.50700 * 109.47172 * 184.99527 * 17 14 13 19 19 C 1.38237 * 119.99614 * 90.00139 * 18 17 14 20 20 C 1.38231 * 119.99835 * 180.27620 * 19 18 17 21 21 C 1.38237 * 119.99933 * 359.49267 * 20 19 18 22 22 C 1.38228 * 120.00255 * 0.50742 * 21 20 19 23 23 C 1.38227 * 120.00427 * 270.02396 * 18 17 14 24 24 H 1.08994 * 109.47138 * 175.05211 * 1 2 3 25 25 H 1.09002 * 109.47092 * 295.05574 * 1 2 3 26 26 H 1.09006 * 109.46726 * 55.05049 * 1 2 3 27 27 H 0.97001 * 120.00410 * 180.02562 * 7 6 4 28 28 H 1.00896 * 111.00379 * 151.04069 * 12 2 1 29 29 H 1.08998 * 109.47432 * 59.99285 * 13 12 2 30 30 H 1.09002 * 109.46734 * 299.99381 * 13 12 2 31 31 H 1.09000 * 109.47297 * 60.00332 * 16 14 13 32 32 H 1.08998 * 109.47408 * 180.02562 * 16 14 13 33 33 H 1.09000 * 109.47272 * 300.00427 * 16 14 13 34 34 H 1.09004 * 109.46840 * 65.00123 * 17 14 13 35 35 H 1.09000 * 109.47535 * 305.00231 * 17 14 13 36 36 H 1.08004 * 120.00278 * 0.02562 * 19 18 17 37 37 H 1.08004 * 120.00013 * 179.72599 * 20 19 18 38 38 H 1.08006 * 119.99982 * 180.23214 * 21 20 19 39 39 H 1.07994 * 120.00534 * 179.71706 * 22 21 20 40 40 H 1.08001 * 119.99942 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1354 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3136 1.8790 -2.3175 9 1 3.5991 2.3948 -1.7821 10 1 2.1059 2.3990 -3.6928 11 1 1.1987 2.3274 -1.4451 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5332 3.5745 15 1 3.5506 -1.0020 3.3397 16 6 1.5824 -1.6096 3.9702 17 6 2.7790 0.4457 4.7359 18 6 3.3987 -0.2739 5.9060 19 6 4.7740 -0.3261 6.0356 20 6 5.3426 -0.9910 7.1058 21 6 4.5358 -1.5949 8.0520 22 6 3.1606 -1.5428 7.9225 23 6 2.5921 -0.8823 6.8494 24 1 -0.3633 -1.0238 -0.0886 25 1 -0.3633 0.4352 0.9310 26 1 -0.3633 0.5887 -0.8424 27 1 2.9371 -0.1050 -4.2554 28 1 2.9173 -1.1206 1.0288 29 1 1.0871 0.6164 2.5525 30 1 2.7589 1.0462 2.1182 31 1 1.4513 -2.3069 3.1428 32 1 1.9473 -2.1477 4.8450 33 1 0.6268 -1.1407 4.2050 34 1 1.8092 0.8479 5.0291 35 1 3.4313 1.2612 4.4239 36 1 5.4043 0.1493 5.2986 37 1 6.4172 -1.0355 7.2047 38 1 4.9801 -2.1112 8.8902 39 1 2.5303 -2.0184 8.6592 40 1 1.5176 -0.8422 6.7477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309336037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:56 Heat of formation + Delta-G solvation = -15.562108 kcal Electronic energy + Delta-G solvation = -17499.406252 eV Core-core repulsion = 14891.165992 eV Total energy + Delta-G solvation = -2608.240260 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33138 -38.39169 -36.23115 -34.22498 -32.24151 -31.73252 -30.17238 -27.67476 -27.33552 -25.55470 -23.38287 -22.33974 -21.46737 -20.90109 -19.04531 -17.58419 -17.00246 -16.34360 -16.09420 -15.77729 -15.55814 -15.20453 -14.89291 -14.56512 -14.20897 -14.02042 -13.76516 -13.39109 -13.18566 -13.09549 -12.83323 -12.72388 -12.60293 -12.22502 -12.14451 -11.87074 -11.84384 -11.72337 -11.54446 -11.34675 -11.00211 -10.74261 -9.74539 -9.50543 -9.02517 -8.32087 -6.37435 0.51791 0.56086 1.30889 1.33072 1.43957 2.30977 2.92221 3.02274 3.57245 3.87265 3.95439 4.15315 4.22612 4.30338 4.36117 4.39933 4.50920 4.60169 4.69407 4.76489 4.83167 4.86260 4.90615 4.95168 5.03755 5.09892 5.12444 5.15849 5.24348 5.28084 5.46903 5.51867 5.57567 5.64520 5.68300 5.71270 5.82504 6.05992 6.19796 6.56003 6.70243 6.87395 7.32180 8.84766 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038639 B = 0.004147 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.486325 B = 6750.926972 C = 6936.337225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.182 3.818 3 H 0.002 0.998 4 C -0.521 4.521 5 H 0.036 0.964 6 C 0.015 3.985 7 N -0.945 5.945 8 Si 0.942 3.058 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.248 1.248 12 N -0.684 5.684 13 C 0.062 3.938 14 C -0.072 4.072 15 H 0.057 0.943 16 C -0.130 4.130 17 C -0.072 4.072 18 C -0.083 4.083 19 C -0.136 4.136 20 C -0.129 4.129 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.125 4.125 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.267 0.733 28 H 0.333 0.667 29 H 0.069 0.931 30 H 0.016 0.984 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 2.813 23.567 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.073 3.927 3 H 0.020 0.980 4 C -0.560 4.560 5 H 0.054 0.946 6 C -0.183 4.183 7 N -0.585 5.585 8 Si 0.766 3.234 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.171 1.171 12 N -0.314 5.314 13 C -0.067 4.067 14 C -0.090 4.090 15 H 0.076 0.924 16 C -0.187 4.187 17 C -0.110 4.110 18 C -0.083 4.083 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.143 4.143 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.150 0.850 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.968 2.591 23.549 23.711 hybrid contribution 0.962 0.998 -1.029 1.726 sum 1.929 3.589 22.520 22.885 Atomic orbital electron populations 1.21735 0.96801 1.00279 0.98975 1.19448 0.93408 0.91890 0.87967 0.98003 1.21314 1.43250 0.94226 0.97183 0.94597 1.25897 0.94156 1.03470 0.94768 1.70053 1.47920 1.37948 1.02602 0.85819 0.79794 0.80178 0.77603 1.19449 1.21110 1.17135 1.60592 1.32657 1.33269 1.04910 1.22100 1.00050 0.93607 0.90961 1.20976 0.98998 0.96101 0.92974 0.92401 1.21680 0.98254 0.98237 1.00570 1.20617 1.01402 0.96914 0.92041 1.19966 0.93803 0.98447 0.96125 1.21280 0.94725 1.00533 0.98829 1.21408 1.00809 0.97819 0.94637 1.21440 0.94004 1.00098 0.99793 1.21447 0.95597 0.99240 0.98270 1.21280 1.00317 0.98182 0.94531 0.94001 0.93215 0.94611 0.92435 0.84959 0.91249 0.96589 0.93448 0.92560 0.92613 0.90059 0.90967 0.85952 0.84679 0.84281 0.84294 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 9.42 71.98 0.68 -4.43 16 2 C 0.18 8.48 2.26 44.17 0.10 8.58 16 3 H 0.00 0.11 4.95 -2.39 -0.01 0.10 16 4 C -0.52 -29.70 8.84 25.60 0.23 -29.48 16 5 H 0.04 2.30 8.06 -2.91 -0.02 2.27 16 6 C 0.02 0.88 5.47 84.65 0.46 1.34 16 7 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 8 Si 0.94 44.06 26.99 68.60 1.85 45.91 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.25 -10.79 6.82 99.48 0.68 -10.12 16 12 N -0.68 -27.57 5.76 -495.45 -2.85 -30.42 16 13 C 0.06 1.99 4.87 86.30 0.42 2.41 16 14 C -0.07 -1.89 2.52 -10.80 -0.03 -1.92 16 15 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 16 C -0.13 -3.37 8.65 71.98 0.62 -2.75 16 17 C -0.07 -1.57 4.84 29.85 0.14 -1.42 16 18 C -0.08 -1.79 4.71 -19.87 -0.09 -1.88 16 19 C -0.14 -2.85 9.70 22.27 0.22 -2.64 16 20 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 21 C -0.14 -2.29 10.05 22.27 0.22 -2.07 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 23 C -0.13 -2.44 7.96 22.27 0.18 -2.26 16 24 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.05 1.81 7.35 -2.39 -0.02 1.79 16 26 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.33 14.05 8.35 -89.70 -0.75 13.30 16 29 H 0.07 2.14 7.36 -2.39 -0.02 2.12 16 30 H 0.02 0.52 8.06 -2.39 -0.02 0.50 16 31 H 0.05 1.44 7.75 -2.39 -0.02 1.42 16 32 H 0.06 1.33 6.26 -2.39 -0.01 1.32 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.61 8.09 -2.38 -0.02 1.59 16 35 H 0.07 1.53 8.09 -2.39 -0.02 1.51 16 36 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.13 2.21 8.04 -2.91 -0.02 2.19 16 Total: -1.00 -64.04 322.59 3.11 -60.93 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.22 Total: 22.80 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 3.60 Total: -40.65 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -2.55 Total: -89.00 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.85 Total: 45.91 kcal Total: -64.04 3.11 -60.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309336037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.368 kcal (2) G-P(sol) polarization free energy of solvation -64.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds