Wall clock time and date at job start Mon Mar 30 2020 06:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46618 * 2 1 4 4 C 1.52993 * 109.47237 * 120.00219 * 2 1 3 5 5 N 1.46905 * 109.47039 * 295.00079 * 4 2 1 6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.46917 * 324.99892 * 6 5 4 8 8 C 1.52993 * 109.47269 * 84.99904 * 6 5 4 9 9 C 1.50692 * 109.46945 * 205.00102 * 6 5 4 10 10 H 1.08004 * 120.00412 * 359.97438 * 9 6 5 11 11 C 1.37879 * 120.00142 * 180.02562 * 9 6 5 12 12 N 1.31522 * 120.00057 * 179.97438 * 11 9 6 13 13 Si 1.86802 * 119.99992 * 359.97438 * 11 9 6 14 14 H 1.48507 * 109.46733 * 90.00010 * 13 11 9 15 15 H 1.48493 * 109.47248 * 210.00007 * 13 11 9 16 16 H 1.48503 * 109.46943 * 330.00498 * 13 11 9 17 17 C 1.53004 * 109.46678 * 240.00401 * 2 1 3 18 18 C 1.50695 * 109.47384 * 65.00186 * 17 2 1 19 19 C 1.38240 * 119.99710 * 269.72197 * 18 17 2 20 20 C 1.38229 * 119.99902 * 179.76787 * 19 18 17 21 21 C 1.38230 * 120.00079 * 0.50657 * 20 19 18 22 22 C 1.38233 * 119.99933 * 359.74671 * 21 20 19 23 23 C 1.38230 * 120.00409 * 89.99640 * 18 17 2 24 24 H 1.08995 * 109.47462 * 60.00244 * 1 2 3 25 25 H 1.08999 * 109.46618 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46725 * 299.99546 * 1 2 3 27 27 H 1.09001 * 109.47393 * 175.00360 * 4 2 1 28 28 H 1.08998 * 109.47408 * 55.00006 * 4 2 1 29 29 H 1.00901 * 110.99869 * 56.04956 * 5 4 2 30 30 H 1.09006 * 109.47343 * 180.02562 * 8 6 5 31 31 H 1.09004 * 109.47587 * 300.00069 * 8 6 5 32 32 H 1.09000 * 109.47161 * 60.00137 * 8 6 5 33 33 H 0.97003 * 119.99446 * 179.97438 * 12 11 9 34 34 H 1.09001 * 109.46592 * 184.99906 * 17 2 1 35 35 H 1.09003 * 109.47168 * 304.99277 * 17 2 1 36 36 H 1.08007 * 119.99856 * 359.97438 * 19 18 17 37 37 H 1.08006 * 120.00172 * 180.23329 * 20 19 18 38 38 H 1.08007 * 120.00227 * 179.73006 * 21 20 19 39 39 H 1.08005 * 120.00119 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.99843 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6514 0.0374 2.4456 6 6 2.1259 -0.6266 3.6671 7 1 2.0826 -1.7075 3.5333 8 6 3.5693 -0.2051 3.9490 9 6 1.2506 -0.2286 4.8274 10 1 0.4248 0.4501 4.6731 11 6 1.5047 -0.7300 6.0864 12 7 0.7411 -0.3823 7.0992 13 14 2.9335 -1.9033 6.3537 14 1 4.1552 -1.1276 6.6871 15 1 2.6132 -2.8269 7.4714 16 1 3.1681 -2.6879 5.1148 17 6 2.0400 -0.7212 -1.2494 18 6 1.6413 0.0572 -2.4766 19 6 0.4381 -0.2088 -3.1031 20 6 0.0702 0.5084 -4.2260 21 6 0.9102 1.4844 -4.7287 22 6 2.1158 1.7467 -4.1053 23 6 2.4814 1.0331 -2.9793 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 3.1264 -0.7994 1.2055 28 1 1.6055 -1.7198 1.2951 29 1 0.6529 0.1792 2.4753 30 1 3.9215 -0.6981 4.8551 31 1 4.2025 -0.4929 3.1096 32 1 3.6126 0.8758 4.0828 33 1 0.9197 -0.7354 7.9849 34 1 3.1263 -0.7994 -1.2057 35 1 1.6054 -1.7198 -1.2953 36 1 -0.2161 -0.9747 -2.7131 37 1 -0.8716 0.3033 -4.7133 38 1 0.6247 2.0418 -5.6086 39 1 2.7723 2.5090 -4.4983 40 1 3.4232 1.2381 -2.4922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309336039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:59 Heat of formation + Delta-G solvation = 9.825664 kcal Electronic energy + Delta-G solvation = -17490.536937 eV Core-core repulsion = 14883.397574 eV Total energy + Delta-G solvation = -2607.139363 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.53176 -37.10096 -34.83739 -32.35985 -31.07657 -30.92939 -28.72263 -26.83453 -25.35427 -24.20216 -22.62266 -21.38952 -19.80523 -19.70655 -16.91608 -16.69200 -15.65330 -15.34882 -15.25410 -14.46013 -14.09536 -13.85174 -13.51699 -13.30748 -13.00243 -12.90145 -12.41061 -12.37242 -12.13387 -11.91091 -11.44997 -11.25258 -11.10897 -10.97737 -10.80609 -10.63545 -10.40349 -10.17227 -10.05871 -9.46880 -9.01105 -8.98161 -8.70153 -8.59803 -7.44887 -6.09236 -4.08847 1.28929 1.31764 3.27452 3.36562 3.39296 3.70401 4.39192 4.68248 4.75899 4.89555 5.01613 5.07280 5.14240 5.24767 5.34760 5.43369 5.45988 5.49587 5.72337 5.81272 5.92419 5.98280 5.99061 6.11678 6.17835 6.27583 6.38346 6.41925 6.42305 6.49197 6.53452 6.61439 6.68078 6.75513 6.84273 6.93849 7.41468 7.60318 7.97702 8.38991 8.64210 8.95635 9.53300 11.03800 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.049735 B = 0.003927 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.849409 B = 7128.611734 C = 7335.211294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 H 0.078 0.922 4 C 0.062 3.938 5 N -0.679 5.679 6 C 0.181 3.819 7 H 0.000 1.000 8 C -0.137 4.137 9 C -0.519 4.519 10 H 0.078 0.922 11 C 0.071 3.929 12 N -0.899 5.899 13 Si 0.892 3.108 14 H -0.278 1.278 15 H -0.298 1.298 16 H -0.269 1.269 17 C -0.079 4.079 18 C -0.069 4.069 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.118 4.118 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.020 0.980 29 H 0.339 0.661 30 H 0.036 0.964 31 H 0.025 0.975 32 H 0.057 0.943 33 H 0.264 0.736 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 0.358 -21.753 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 H 0.096 0.904 4 C -0.068 4.068 5 N -0.312 5.312 6 C 0.072 3.928 7 H 0.017 0.983 8 C -0.194 4.194 9 C -0.558 4.558 10 H 0.096 0.904 11 C -0.131 4.131 12 N -0.537 5.537 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.226 1.226 16 H -0.194 1.194 17 C -0.117 4.117 18 C -0.069 4.069 19 C -0.134 4.134 20 C -0.139 4.139 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.158 0.842 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.303 0.759 -21.575 21.711 hybrid contribution 0.172 -1.310 0.360 1.370 sum 2.475 -0.551 -21.215 21.366 Atomic orbital electron populations 1.21916 0.95459 1.01429 1.01993 1.21109 0.95915 1.00338 0.92700 0.90352 1.21988 0.99840 0.94474 0.90465 1.60534 1.19616 1.49734 1.01283 1.19515 0.92843 0.91952 0.88469 0.98297 1.22063 0.97843 1.01725 0.97799 1.21122 1.14234 1.29001 0.91408 0.90412 1.24942 0.96289 0.96010 0.95907 1.69900 1.38954 1.44560 1.00304 0.86788 0.82661 0.80949 0.77347 1.20502 1.22567 1.19410 1.20706 1.01247 0.98214 0.91516 1.19947 0.94342 0.96449 0.96150 1.21095 0.96372 1.00187 0.95787 1.21129 0.99539 0.96556 0.96703 1.21098 0.94928 0.98608 1.00285 1.21129 0.96838 0.99665 0.96170 1.21095 0.99879 0.96189 0.96460 0.92728 0.93182 0.91921 0.91951 0.96191 0.84190 0.94585 0.95624 0.92375 0.92602 0.90974 0.91116 0.86130 0.86352 0.86477 0.86324 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.55 37.16 0.32 -1.68 16 2 C -0.08 -1.12 2.59 -90.62 -0.23 -1.35 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.06 1.04 4.94 -3.82 -0.02 1.02 16 5 N -0.68 -13.98 6.30 -107.96 -0.68 -14.66 16 6 C 0.18 4.37 2.19 -68.87 -0.15 4.22 16 7 H 0.00 -0.01 6.86 -51.93 -0.36 -0.37 16 8 C -0.14 -3.11 8.89 37.15 0.33 -2.78 16 9 C -0.52 -14.71 9.17 -34.44 -0.32 -15.02 16 10 H 0.08 2.37 7.86 -52.48 -0.41 1.96 16 11 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 12 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 13 Si 0.89 22.30 24.37 -169.99 -4.14 18.15 16 14 H -0.28 -6.79 6.87 56.52 0.39 -6.40 16 15 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 16 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 17 C -0.08 -0.91 4.84 -27.88 -0.13 -1.04 16 18 C -0.07 -0.78 4.70 -104.63 -0.49 -1.27 16 19 C -0.12 -1.24 7.98 -39.58 -0.32 -1.55 16 20 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 21 C -0.13 -1.24 10.05 -39.59 -0.40 -1.64 16 22 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 23 C -0.12 -1.28 9.70 -39.59 -0.38 -1.67 16 24 H 0.05 0.67 6.28 -51.93 -0.33 0.34 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.91 6.68 -51.93 -0.35 0.56 16 27 H 0.06 1.04 7.43 -51.93 -0.39 0.65 16 28 H 0.02 0.34 8.06 -51.93 -0.42 -0.08 16 29 H 0.34 6.99 6.48 -39.29 -0.25 6.73 16 30 H 0.04 0.84 3.27 -51.93 -0.17 0.67 16 31 H 0.02 0.50 7.45 -51.93 -0.39 0.12 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 34 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.12 1.16 8.05 -52.48 -0.42 0.74 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 39 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 313.85 15.07 4.73 4.73 Total: -1.00 -30.29 313.85 -8.47 -38.75 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.46 Total: 3.82 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -2.69 Total: -23.97 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.09 Total: -41.48 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.29 -8.47 -38.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309336039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.581 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds