Wall clock time and date at job start Mon Mar 30 2020 06:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46618 * 2 1 4 4 C 1.52993 * 109.47237 * 120.00219 * 2 1 3 5 5 N 1.46905 * 109.47039 * 295.00079 * 4 2 1 6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.46917 * 324.99892 * 6 5 4 8 8 C 1.52993 * 109.47269 * 84.99904 * 6 5 4 9 9 C 1.50692 * 109.46945 * 205.00102 * 6 5 4 10 10 H 1.08004 * 120.00412 * 359.97438 * 9 6 5 11 11 C 1.37879 * 120.00142 * 180.02562 * 9 6 5 12 12 N 1.31522 * 120.00057 * 179.97438 * 11 9 6 13 13 Si 1.86802 * 119.99992 * 359.97438 * 11 9 6 14 14 H 1.48507 * 109.46733 * 90.00010 * 13 11 9 15 15 H 1.48493 * 109.47248 * 210.00007 * 13 11 9 16 16 H 1.48503 * 109.46943 * 330.00498 * 13 11 9 17 17 C 1.53004 * 109.46678 * 240.00401 * 2 1 3 18 18 C 1.50695 * 109.47384 * 65.00186 * 17 2 1 19 19 C 1.38240 * 119.99710 * 269.72197 * 18 17 2 20 20 C 1.38229 * 119.99902 * 179.76787 * 19 18 17 21 21 C 1.38230 * 120.00079 * 0.50657 * 20 19 18 22 22 C 1.38233 * 119.99933 * 359.74671 * 21 20 19 23 23 C 1.38230 * 120.00409 * 89.99640 * 18 17 2 24 24 H 1.08995 * 109.47462 * 60.00244 * 1 2 3 25 25 H 1.08999 * 109.46618 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46725 * 299.99546 * 1 2 3 27 27 H 1.09001 * 109.47393 * 175.00360 * 4 2 1 28 28 H 1.08998 * 109.47408 * 55.00006 * 4 2 1 29 29 H 1.00901 * 110.99869 * 56.04956 * 5 4 2 30 30 H 1.09006 * 109.47343 * 180.02562 * 8 6 5 31 31 H 1.09004 * 109.47587 * 300.00069 * 8 6 5 32 32 H 1.09000 * 109.47161 * 60.00137 * 8 6 5 33 33 H 0.97003 * 119.99446 * 179.97438 * 12 11 9 34 34 H 1.09001 * 109.46592 * 184.99906 * 17 2 1 35 35 H 1.09003 * 109.47168 * 304.99277 * 17 2 1 36 36 H 1.08007 * 119.99856 * 359.97438 * 19 18 17 37 37 H 1.08006 * 120.00172 * 180.23329 * 20 19 18 38 38 H 1.08007 * 120.00227 * 179.73006 * 21 20 19 39 39 H 1.08005 * 120.00119 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.99843 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6514 0.0374 2.4456 6 6 2.1259 -0.6266 3.6671 7 1 2.0826 -1.7075 3.5333 8 6 3.5693 -0.2051 3.9490 9 6 1.2506 -0.2286 4.8274 10 1 0.4248 0.4501 4.6731 11 6 1.5047 -0.7300 6.0864 12 7 0.7411 -0.3823 7.0992 13 14 2.9335 -1.9033 6.3537 14 1 4.1552 -1.1276 6.6871 15 1 2.6132 -2.8269 7.4714 16 1 3.1681 -2.6879 5.1148 17 6 2.0400 -0.7212 -1.2494 18 6 1.6413 0.0572 -2.4766 19 6 0.4381 -0.2088 -3.1031 20 6 0.0702 0.5084 -4.2260 21 6 0.9102 1.4844 -4.7287 22 6 2.1158 1.7467 -4.1053 23 6 2.4814 1.0331 -2.9793 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 3.1264 -0.7994 1.2055 28 1 1.6055 -1.7198 1.2951 29 1 0.6529 0.1792 2.4753 30 1 3.9215 -0.6981 4.8551 31 1 4.2025 -0.4929 3.1096 32 1 3.6126 0.8758 4.0828 33 1 0.9197 -0.7354 7.9849 34 1 3.1263 -0.7994 -1.2057 35 1 1.6054 -1.7198 -1.2953 36 1 -0.2161 -0.9747 -2.7131 37 1 -0.8716 0.3033 -4.7133 38 1 0.6247 2.0418 -5.6086 39 1 2.7723 2.5090 -4.4983 40 1 3.4232 1.2381 -2.4922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309336039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:59 Heat of formation + Delta-G solvation = -8.235244 kcal Electronic energy + Delta-G solvation = -17491.320117 eV Core-core repulsion = 14883.397574 eV Total energy + Delta-G solvation = -2607.922543 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.33886 -38.50179 -36.31645 -34.23988 -32.31510 -31.72771 -30.22382 -27.86837 -27.21894 -25.67501 -23.37952 -22.38607 -21.59287 -20.82540 -18.85513 -17.61355 -17.35911 -16.39298 -16.08009 -15.83203 -15.56558 -15.24205 -14.88630 -14.56870 -14.21988 -14.09793 -14.03710 -13.52758 -13.37644 -13.03869 -12.99081 -12.74669 -12.58799 -12.21263 -12.11753 -11.86834 -11.75716 -11.53389 -11.50313 -11.31706 -11.00617 -10.77803 -9.74207 -9.50286 -9.12005 -8.32555 -6.37326 0.52179 0.56575 1.30246 1.34412 1.45415 2.30018 2.93025 3.02619 3.49848 3.88547 3.94998 4.15293 4.21887 4.24740 4.29190 4.39370 4.53066 4.59053 4.68345 4.71355 4.73519 4.80172 4.84605 4.90739 4.95939 5.02131 5.04923 5.09492 5.24089 5.26254 5.41392 5.45883 5.50960 5.63998 5.64940 5.68827 5.82812 6.00107 6.20185 6.51586 6.65640 6.84145 7.29610 8.83974 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.049735 B = 0.003927 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.849409 B = 7128.611734 C = 7335.211294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 H 0.068 0.932 4 C 0.063 3.937 5 N -0.684 5.684 6 C 0.184 3.816 7 H -0.005 1.005 8 C -0.133 4.133 9 C -0.526 4.526 10 H 0.038 0.962 11 C 0.013 3.987 12 N -0.946 5.946 13 Si 0.955 3.045 14 H -0.265 1.265 15 H -0.297 1.297 16 H -0.251 1.251 17 C -0.071 4.071 18 C -0.084 4.084 19 C -0.128 4.128 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.133 4.133 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.020 0.980 29 H 0.335 0.665 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.267 0.733 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.168 -0.360 -23.792 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 H 0.086 0.914 4 C -0.067 4.067 5 N -0.315 5.315 6 C 0.075 3.925 7 H 0.013 0.987 8 C -0.191 4.191 9 C -0.565 4.565 10 H 0.057 0.943 11 C -0.184 4.184 12 N -0.586 5.586 13 Si 0.782 3.218 14 H -0.191 1.191 15 H -0.225 1.225 16 H -0.175 1.175 17 C -0.109 4.109 18 C -0.084 4.084 19 C -0.146 4.146 20 C -0.147 4.147 21 C -0.154 4.154 22 C -0.146 4.146 23 C -0.151 4.151 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.154 0.846 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.673 0.047 -23.646 23.930 hybrid contribution -0.351 -1.006 0.912 1.402 sum 3.321 -0.958 -22.734 22.995 Atomic orbital electron populations 1.21874 0.95289 1.01679 1.01562 1.20972 0.95964 0.99621 0.92418 0.91382 1.22093 1.00293 0.94355 0.89933 1.60521 1.19394 1.50135 1.01477 1.19379 0.93089 0.91733 0.88321 0.98733 1.21977 0.97087 1.01188 0.98852 1.21422 1.13857 1.27909 0.93282 0.94331 1.25823 0.99174 0.97897 0.95543 1.70045 1.41184 1.46418 1.00985 0.85764 0.79357 0.78856 0.77868 1.19123 1.22454 1.17508 1.20600 1.01590 0.98194 0.90468 1.19967 0.94977 0.97034 0.96380 1.21274 0.96363 1.00657 0.96277 1.21431 1.00405 0.96345 0.96481 1.21440 0.94636 0.98459 1.00821 1.21423 0.97399 0.99897 0.95887 1.21293 1.00256 0.96435 0.97079 0.91673 0.92601 0.93762 0.91271 0.96169 0.84645 0.95060 0.92448 0.93137 0.92408 0.90339 0.90504 0.85503 0.84478 0.84317 0.84527 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 8.55 71.99 0.62 -3.16 16 2 C -0.07 -1.85 2.59 -10.79 -0.03 -1.88 16 3 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 4 C 0.06 2.00 4.94 86.30 0.43 2.43 16 5 N -0.68 -27.84 6.30 -495.47 -3.12 -30.96 16 6 C 0.18 8.74 2.19 44.16 0.10 8.84 16 7 H 0.00 -0.23 6.86 -2.39 -0.02 -0.25 16 8 C -0.13 -5.78 8.89 71.98 0.64 -5.14 16 9 C -0.53 -30.39 9.17 25.60 0.23 -30.15 16 10 H 0.04 2.46 7.86 -2.91 -0.02 2.43 16 11 C 0.01 0.79 5.45 84.65 0.46 1.25 16 12 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 13 Si 0.95 45.37 24.37 68.60 1.67 47.04 16 14 H -0.27 -12.01 6.87 99.48 0.68 -11.32 16 15 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 16 H -0.25 -11.12 6.53 99.48 0.65 -10.47 16 17 C -0.07 -1.50 4.84 29.85 0.14 -1.36 16 18 C -0.08 -1.75 4.70 -19.87 -0.09 -1.84 16 19 C -0.13 -2.49 7.98 22.27 0.18 -2.31 16 20 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 21 C -0.14 -2.25 10.05 22.27 0.22 -2.03 16 22 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 23 C -0.13 -2.66 9.70 22.27 0.22 -2.45 16 24 H 0.06 1.53 6.28 -2.39 -0.02 1.52 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.04 1.29 6.68 -2.39 -0.02 1.27 16 27 H 0.07 2.12 7.43 -2.39 -0.02 2.10 16 28 H 0.02 0.65 8.06 -2.39 -0.02 0.63 16 29 H 0.33 14.06 6.48 -89.69 -0.58 13.48 16 30 H 0.03 1.37 3.27 -2.38 -0.01 1.36 16 31 H 0.06 2.10 7.45 -2.39 -0.02 2.08 16 32 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 34 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 35 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 36 H 0.13 2.22 8.05 -2.91 -0.02 2.20 16 37 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -65.09 313.85 2.75 -62.34 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.34 Total: 22.60 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 3.56 Total: -41.87 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -2.82 Total: -90.12 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.67 Total: 47.04 kcal Total: -65.09 2.75 -62.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309336039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.104 kcal (2) G-P(sol) polarization free energy of solvation -65.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds