Wall clock time and date at job start Mon Mar 30 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46988 * 2 1 4 4 C 1.50697 * 109.47356 * 239.99751 * 2 1 3 5 5 H 1.07997 * 120.00099 * 274.99605 * 4 2 1 6 6 C 1.37877 * 119.99936 * 94.99663 * 4 2 1 7 7 N 1.31516 * 120.00148 * 184.91522 * 6 4 2 8 8 Si 1.86799 * 120.00370 * 4.91299 * 6 4 2 9 9 H 1.48499 * 109.47285 * 84.83018 * 8 6 4 10 10 H 1.48491 * 109.47454 * 204.83407 * 8 6 4 11 11 H 1.48506 * 109.46997 * 324.83407 * 8 6 4 12 12 N 1.46903 * 109.47463 * 119.99254 * 2 1 3 13 13 C 1.46898 * 111.00241 * 275.00542 * 12 2 1 14 14 C 1.53001 * 109.47155 * 179.97438 * 13 12 2 15 15 H 1.08998 * 109.46995 * 305.00143 * 14 13 12 16 16 C 1.52997 * 109.47151 * 64.99948 * 14 13 12 17 17 C 1.52997 * 109.47006 * 184.99850 * 14 13 12 18 18 C 1.50707 * 109.46930 * 174.99838 * 17 14 13 19 19 C 1.38232 * 119.99722 * 90.00327 * 18 17 14 20 20 C 1.38232 * 119.99870 * 179.97438 * 19 18 17 21 21 C 1.38235 * 120.00087 * 0.02562 * 20 19 18 22 22 C 1.38234 * 119.99738 * 0.25368 * 21 20 19 23 23 C 1.38227 * 120.00084 * 359.46869 * 22 21 20 24 24 H 1.08994 * 109.47582 * 295.04589 * 1 2 3 25 25 H 1.08995 * 109.47297 * 55.05097 * 1 2 3 26 26 H 1.09003 * 109.46871 * 175.05017 * 1 2 3 27 27 H 0.96999 * 120.00591 * 179.97438 * 7 6 4 28 28 H 1.00902 * 110.99230 * 38.95475 * 12 2 1 29 29 H 1.09005 * 109.46906 * 59.99533 * 13 12 2 30 30 H 1.08996 * 109.47263 * 300.00000 * 13 12 2 31 31 H 1.09002 * 109.46801 * 59.99751 * 16 14 13 32 32 H 1.08999 * 109.47046 * 179.97438 * 16 14 13 33 33 H 1.09000 * 109.47196 * 300.00488 * 16 14 13 34 34 H 1.09005 * 109.47059 * 55.00463 * 17 14 13 35 35 H 1.08994 * 109.47646 * 295.00267 * 17 14 13 36 36 H 1.08001 * 119.99888 * 359.97438 * 19 18 17 37 37 H 1.08005 * 119.99619 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.99594 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.99476 * 179.72647 * 22 21 20 40 40 H 1.08001 * 120.00412 * 180.27564 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1356 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3133 1.8790 -2.3176 9 1 3.5988 2.3950 -1.7824 10 1 2.1055 2.3989 -3.6930 11 1 1.1983 2.3274 -1.4452 12 7 2.0197 -0.6923 1.1995 13 6 2.0825 0.2228 2.3469 14 6 2.5951 -0.5328 3.5745 15 1 1.9693 -1.4078 3.7501 16 6 4.0386 -0.9786 3.3330 17 6 2.5428 0.3854 4.7972 18 6 2.9306 -0.3937 6.0275 19 6 4.2552 -0.4543 6.4181 20 6 4.6110 -1.1685 7.5469 21 6 3.6421 -1.8225 8.2848 22 6 2.3183 -1.7667 7.8910 23 6 1.9618 -1.0478 6.7654 24 1 -0.3634 0.4350 0.9309 25 1 -0.3633 0.5887 -0.8423 26 1 -0.3633 -1.0239 -0.0887 27 1 2.9363 -0.1050 -4.2556 28 1 1.4496 -1.4977 1.4101 29 1 1.0870 0.6165 2.5525 30 1 2.7587 1.0464 2.1182 31 1 4.6645 -0.1036 3.1573 32 1 4.4040 -1.5165 4.2077 33 1 4.0760 -1.6327 2.4618 34 1 1.5313 0.7737 4.9169 35 1 3.2363 1.2148 4.6587 36 1 5.0122 0.0563 5.8413 37 1 5.6460 -1.2162 7.8518 38 1 3.9202 -2.3809 9.1665 39 1 1.5620 -2.2813 8.4650 40 1 0.9269 -1.0004 6.4602 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309336042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:02 Heat of formation + Delta-G solvation = 3.755479 kcal Electronic energy + Delta-G solvation = -17499.510698 eV Core-core repulsion = 14892.108112 eV Total energy + Delta-G solvation = -2607.402586 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.51760 -37.05421 -34.82785 -32.28354 -31.07362 -30.92501 -28.55240 -26.66529 -25.24903 -24.21320 -22.61314 -21.37141 -20.14203 -19.60575 -16.94841 -16.76872 -15.40183 -15.28605 -14.81964 -14.52314 -14.25855 -13.87965 -13.50318 -13.19310 -12.96363 -12.57919 -12.41973 -12.23234 -12.07697 -11.82858 -11.39563 -11.27952 -11.04164 -11.01370 -10.74936 -10.69775 -10.54273 -10.33796 -9.92935 -9.70190 -9.11363 -8.97909 -8.70158 -8.48285 -7.29475 -6.02189 -3.98904 1.29650 1.32449 3.30492 3.38246 3.38360 3.71105 4.44877 4.69001 4.76657 4.89897 5.01146 5.06164 5.14008 5.32624 5.38065 5.45346 5.49071 5.67008 5.73681 5.87405 5.96089 6.00021 6.03800 6.13665 6.26378 6.28522 6.35386 6.38097 6.42528 6.43434 6.57983 6.63774 6.68232 6.80942 6.85441 6.94744 7.16611 7.75051 8.02316 8.43600 8.71699 9.05965 9.60982 11.11628 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.042467 B = 0.004092 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.173166 B = 6840.611424 C = 6962.136648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.179 3.821 3 H 0.035 0.965 4 C -0.490 4.490 5 H 0.076 0.924 6 C 0.069 3.931 7 N -0.902 5.902 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.269 1.269 12 N -0.672 5.672 13 C 0.060 3.940 14 C -0.080 4.080 15 H 0.066 0.934 16 C -0.139 4.139 17 C -0.080 4.080 18 C -0.068 4.068 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.120 4.120 24 H 0.019 0.981 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.263 0.737 28 H 0.326 0.674 29 H 0.016 0.984 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 1.032 21.735 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.071 3.929 3 H 0.053 0.947 4 C -0.528 4.528 5 H 0.094 0.906 6 C -0.132 4.132 7 N -0.541 5.541 8 Si 0.704 3.296 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.194 1.194 12 N -0.301 5.301 13 C -0.070 4.070 14 C -0.099 4.099 15 H 0.084 0.916 16 C -0.196 4.196 17 C -0.118 4.118 18 C -0.068 4.068 19 C -0.133 4.133 20 C -0.139 4.139 21 C -0.149 4.149 22 C -0.139 4.139 23 C -0.138 4.138 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.928 1.152 21.357 21.408 hybrid contribution -0.972 1.115 0.120 1.484 sum -0.043 2.267 21.477 21.597 Atomic orbital electron populations 1.22639 1.01130 1.00691 0.98527 1.19650 0.89281 0.94652 0.89329 0.94701 1.20878 1.42451 0.95688 0.93825 0.90634 1.24979 0.94862 0.97982 0.95426 1.69893 1.46920 1.35583 1.01682 0.86901 0.78868 0.86910 0.76944 1.20200 1.21593 1.19406 1.60886 1.57734 1.08765 1.02764 1.22027 0.97964 0.96033 0.90949 1.21086 0.98303 0.97684 0.92778 0.91586 1.21774 0.94844 1.01407 1.01586 1.20729 1.01831 0.97537 0.91703 1.19948 0.93364 0.97510 0.96018 1.21109 0.95832 0.99645 0.96666 1.21139 0.99272 0.97886 0.95589 1.21096 0.93322 1.00391 1.00121 1.21114 0.96281 0.99330 0.97127 1.21072 0.99309 0.97945 0.95469 0.96186 0.93341 0.93300 0.92738 0.85707 0.96618 0.91846 0.93350 0.93668 0.90872 0.91255 0.90947 0.86021 0.86319 0.86480 0.86370 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 9.16 37.16 0.34 -3.27 16 2 C 0.18 4.22 2.23 -68.87 -0.15 4.06 16 3 H 0.04 0.85 4.95 -51.93 -0.26 0.59 16 4 C -0.49 -13.84 9.19 -34.44 -0.32 -14.16 16 5 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 7 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 8 Si 0.88 21.76 26.99 -169.99 -4.59 17.17 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.27 -6.38 6.82 56.52 0.39 -6.00 16 12 N -0.67 -13.65 5.69 -107.95 -0.61 -14.26 16 13 C 0.06 1.01 4.87 -3.82 -0.02 0.99 16 14 C -0.08 -1.10 2.52 -90.62 -0.23 -1.33 16 15 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 16 C -0.14 -2.00 8.65 37.16 0.32 -1.68 16 17 C -0.08 -0.94 4.84 -27.88 -0.13 -1.08 16 18 C -0.07 -0.78 4.71 -104.62 -0.49 -1.28 16 19 C -0.11 -1.26 7.96 -39.59 -0.32 -1.57 16 20 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 21 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 22 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 23 C -0.12 -1.30 9.70 -39.59 -0.38 -1.69 16 24 H 0.02 0.36 7.35 -51.93 -0.38 -0.02 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.33 6.25 8.48 -39.29 -0.33 5.92 16 29 H 0.02 0.26 7.36 -51.93 -0.38 -0.13 16 30 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.59 6.26 -51.93 -0.33 0.27 16 33 H 0.07 1.22 7.75 -51.93 -0.40 0.82 16 34 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.12 1.23 8.04 -52.49 -0.42 0.81 16 37 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 322.72 15.07 4.86 4.86 Total: -1.00 -30.31 322.72 -8.96 -39.27 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.72 Total: 3.93 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -2.67 Total: -23.95 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.16 Total: -41.29 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.59 Total: 17.17 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.31 -8.96 -39.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309336042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.023 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds