Wall clock time and date at job start Mon Mar 30 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46988 * 2 1 4 4 C 1.50697 * 109.47356 * 239.99751 * 2 1 3 5 5 H 1.07997 * 120.00099 * 274.99605 * 4 2 1 6 6 C 1.37877 * 119.99936 * 94.99663 * 4 2 1 7 7 N 1.31516 * 120.00148 * 184.91522 * 6 4 2 8 8 Si 1.86799 * 120.00370 * 4.91299 * 6 4 2 9 9 H 1.48499 * 109.47285 * 84.83018 * 8 6 4 10 10 H 1.48491 * 109.47454 * 204.83407 * 8 6 4 11 11 H 1.48506 * 109.46997 * 324.83407 * 8 6 4 12 12 N 1.46903 * 109.47463 * 119.99254 * 2 1 3 13 13 C 1.46898 * 111.00241 * 275.00542 * 12 2 1 14 14 C 1.53001 * 109.47155 * 179.97438 * 13 12 2 15 15 H 1.08998 * 109.46995 * 305.00143 * 14 13 12 16 16 C 1.52997 * 109.47151 * 64.99948 * 14 13 12 17 17 C 1.52997 * 109.47006 * 184.99850 * 14 13 12 18 18 C 1.50707 * 109.46930 * 174.99838 * 17 14 13 19 19 C 1.38232 * 119.99722 * 90.00327 * 18 17 14 20 20 C 1.38232 * 119.99870 * 179.97438 * 19 18 17 21 21 C 1.38235 * 120.00087 * 0.02562 * 20 19 18 22 22 C 1.38234 * 119.99738 * 0.25368 * 21 20 19 23 23 C 1.38227 * 120.00084 * 359.46869 * 22 21 20 24 24 H 1.08994 * 109.47582 * 295.04589 * 1 2 3 25 25 H 1.08995 * 109.47297 * 55.05097 * 1 2 3 26 26 H 1.09003 * 109.46871 * 175.05017 * 1 2 3 27 27 H 0.96999 * 120.00591 * 179.97438 * 7 6 4 28 28 H 1.00902 * 110.99230 * 38.95475 * 12 2 1 29 29 H 1.09005 * 109.46906 * 59.99533 * 13 12 2 30 30 H 1.08996 * 109.47263 * 300.00000 * 13 12 2 31 31 H 1.09002 * 109.46801 * 59.99751 * 16 14 13 32 32 H 1.08999 * 109.47046 * 179.97438 * 16 14 13 33 33 H 1.09000 * 109.47196 * 300.00488 * 16 14 13 34 34 H 1.09005 * 109.47059 * 55.00463 * 17 14 13 35 35 H 1.08994 * 109.47646 * 295.00267 * 17 14 13 36 36 H 1.08001 * 119.99888 * 359.97438 * 19 18 17 37 37 H 1.08005 * 119.99619 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.99594 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.99476 * 179.72647 * 22 21 20 40 40 H 1.08001 * 120.00412 * 180.27564 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1356 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3133 1.8790 -2.3176 9 1 3.5988 2.3950 -1.7824 10 1 2.1055 2.3989 -3.6930 11 1 1.1983 2.3274 -1.4452 12 7 2.0197 -0.6923 1.1995 13 6 2.0825 0.2228 2.3469 14 6 2.5951 -0.5328 3.5745 15 1 1.9693 -1.4078 3.7501 16 6 4.0386 -0.9786 3.3330 17 6 2.5428 0.3854 4.7972 18 6 2.9306 -0.3937 6.0275 19 6 4.2552 -0.4543 6.4181 20 6 4.6110 -1.1685 7.5469 21 6 3.6421 -1.8225 8.2848 22 6 2.3183 -1.7667 7.8910 23 6 1.9618 -1.0478 6.7654 24 1 -0.3634 0.4350 0.9309 25 1 -0.3633 0.5887 -0.8423 26 1 -0.3633 -1.0239 -0.0887 27 1 2.9363 -0.1050 -4.2556 28 1 1.4496 -1.4977 1.4101 29 1 1.0870 0.6165 2.5525 30 1 2.7587 1.0464 2.1182 31 1 4.6645 -0.1036 3.1573 32 1 4.4040 -1.5165 4.2077 33 1 4.0760 -1.6327 2.4618 34 1 1.5313 0.7737 4.9169 35 1 3.2363 1.2148 4.6587 36 1 5.0122 0.0563 5.8413 37 1 5.6460 -1.2162 7.8518 38 1 3.9202 -2.3809 9.1665 39 1 1.5620 -2.2813 8.4650 40 1 0.9269 -1.0004 6.4602 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309336042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:02 Heat of formation + Delta-G solvation = -13.678410 kcal Electronic energy + Delta-G solvation = -17500.266688 eV Core-core repulsion = 14892.108112 eV Total energy + Delta-G solvation = -2608.158576 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33038 -38.45687 -36.25085 -34.22524 -32.24076 -31.72800 -30.05920 -27.68822 -27.22750 -25.57243 -23.37941 -22.31073 -21.86879 -20.85929 -18.99203 -17.57834 -16.65582 -16.32321 -16.26240 -15.76037 -15.53994 -15.34698 -14.73080 -14.42014 -14.18117 -14.07273 -13.83636 -13.44749 -13.28677 -13.17521 -12.94089 -12.71959 -12.56845 -12.27214 -11.98943 -11.95338 -11.77147 -11.72514 -11.51186 -11.38829 -11.10043 -10.66474 -9.74212 -9.50162 -8.90743 -8.24780 -6.26292 0.52144 0.56475 1.34591 1.35962 1.45609 2.36218 2.92637 3.07253 3.60921 3.88737 3.95989 4.15196 4.23050 4.29832 4.37100 4.39977 4.46576 4.58536 4.69326 4.70647 4.76464 4.78357 4.84805 4.93510 4.94856 5.05123 5.13358 5.15021 5.24813 5.27867 5.43438 5.47927 5.57438 5.64826 5.68676 5.70866 5.82863 6.10209 6.20196 6.71734 6.79614 6.84312 7.37719 8.92922 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.042467 B = 0.004092 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.173166 B = 6840.611424 C = 6962.136648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.182 3.818 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.030 0.970 6 C 0.007 3.993 7 N -0.953 5.953 8 Si 0.943 3.057 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.246 1.246 12 N -0.685 5.685 13 C 0.062 3.938 14 C -0.069 4.069 15 H 0.065 0.935 16 C -0.133 4.133 17 C -0.072 4.072 18 C -0.083 4.083 19 C -0.128 4.128 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.132 4.132 24 H 0.052 0.948 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.332 0.668 29 H 0.030 0.970 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.428 2.414 24.235 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.073 3.927 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.049 0.951 6 C -0.189 4.189 7 N -0.594 5.594 8 Si 0.767 3.233 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.170 1.170 12 N -0.316 5.316 13 C -0.067 4.067 14 C -0.088 4.088 15 H 0.084 0.916 16 C -0.191 4.191 17 C -0.109 4.109 18 C -0.083 4.083 19 C -0.146 4.146 20 C -0.147 4.147 21 C -0.154 4.154 22 C -0.146 4.146 23 C -0.150 4.150 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.149 0.851 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.143 0.857 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.293 2.529 23.891 24.027 hybrid contribution -0.747 0.549 -0.574 1.090 sum -0.453 3.078 23.317 23.524 Atomic orbital electron populations 1.22480 0.99014 1.00864 0.99906 1.19474 0.90718 0.93869 0.88653 0.94865 1.21183 1.42022 0.93996 0.96168 0.95136 1.25868 0.94717 1.03452 0.94883 1.70056 1.48946 1.37768 1.02640 0.85814 0.79738 0.80292 0.77417 1.19613 1.21338 1.16961 1.60643 1.57993 1.09602 1.03314 1.22072 0.98721 0.95422 0.90476 1.20967 0.97458 0.97833 0.92574 0.91616 1.21703 0.95605 1.00940 1.00817 1.20617 1.02578 0.97051 0.90703 1.19971 0.93832 0.98271 0.96263 1.21273 0.95867 1.00154 0.97320 1.21429 1.00455 0.97524 0.95295 1.21438 0.93195 1.00057 1.00666 1.21423 0.97070 0.99085 0.96992 1.21285 0.99725 0.98119 0.95890 0.92909 0.94098 0.93483 0.92690 0.85078 0.95167 0.92560 0.93341 0.92454 0.93690 0.90291 0.90637 0.85713 0.84576 0.84315 0.84437 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.58 9.16 71.98 0.66 -5.92 16 2 C 0.18 8.39 2.23 44.17 0.10 8.49 16 3 H 0.03 1.55 4.95 -2.38 -0.01 1.54 16 4 C -0.49 -28.57 9.19 25.60 0.24 -28.34 16 5 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 6 C 0.01 0.42 5.47 84.65 0.46 0.89 16 7 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 8 Si 0.94 44.69 26.99 68.60 1.85 46.54 16 9 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.25 -10.65 6.82 99.48 0.68 -9.97 16 12 N -0.69 -27.34 5.69 -495.45 -2.82 -30.16 16 13 C 0.06 1.97 4.87 86.30 0.42 2.39 16 14 C -0.07 -1.81 2.52 -10.80 -0.03 -1.84 16 15 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 16 C -0.13 -3.75 8.65 71.98 0.62 -3.13 16 17 C -0.07 -1.53 4.84 29.85 0.14 -1.38 16 18 C -0.08 -1.75 4.71 -19.86 -0.09 -1.85 16 19 C -0.13 -2.59 7.96 22.27 0.18 -2.41 16 20 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 21 C -0.14 -2.27 10.05 22.27 0.22 -2.04 16 22 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 23 C -0.13 -2.59 9.70 22.27 0.22 -2.38 16 24 H 0.05 1.78 7.35 -2.39 -0.02 1.76 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 28 H 0.33 12.54 8.48 -89.69 -0.76 11.78 16 29 H 0.03 0.88 7.36 -2.38 -0.02 0.86 16 30 H 0.06 1.86 8.05 -2.39 -0.02 1.84 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.45 6.26 -2.39 -0.01 1.44 16 33 H 0.04 1.50 7.75 -2.39 -0.02 1.48 16 34 H 0.08 1.53 8.09 -2.38 -0.02 1.51 16 35 H 0.07 1.56 8.09 -2.39 -0.02 1.54 16 36 H 0.12 2.34 8.04 -2.91 -0.02 2.32 16 37 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 39 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 40 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -66.16 322.72 3.13 -63.03 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.20 Total: 22.38 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 3.59 Total: -41.61 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -2.52 Total: -90.35 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.85 Total: 46.54 kcal Total: -66.16 3.13 -63.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309336042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.356 kcal (2) G-P(sol) polarization free energy of solvation -66.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds