Wall clock time and date at job start Mon Mar 30 2020 06:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46821 * 2 1 4 4 C 1.50693 * 109.47125 * 120.00339 * 2 1 3 5 5 H 1.08001 * 120.00476 * 119.99976 * 4 2 1 6 6 C 1.37885 * 119.99989 * 300.00103 * 4 2 1 7 7 N 1.31514 * 119.99938 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99874 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47576 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47002 * 120.00112 * 8 6 4 11 11 H 1.48506 * 109.47136 * 239.99873 * 8 6 4 12 12 N 1.46895 * 109.47015 * 240.00251 * 2 1 3 13 13 C 1.46907 * 110.99924 * 85.00280 * 12 2 1 14 14 C 1.53005 * 109.47038 * 180.02562 * 13 12 2 15 15 H 1.09002 * 109.46833 * 304.99218 * 14 13 12 16 16 C 1.52996 * 109.47305 * 64.99392 * 14 13 12 17 17 C 1.53001 * 109.46716 * 184.99846 * 14 13 12 18 18 C 1.50706 * 109.46607 * 174.99483 * 17 14 13 19 19 C 1.38238 * 119.99744 * 90.00198 * 18 17 14 20 20 C 1.38234 * 119.99693 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00240 * 359.97438 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.26327 * 21 20 19 23 23 C 1.38234 * 120.00173 * 269.97579 * 18 17 14 24 24 H 1.08995 * 109.47298 * 299.99843 * 1 2 3 25 25 H 1.09000 * 109.47269 * 59.99782 * 1 2 3 26 26 H 1.09007 * 109.46937 * 179.97438 * 1 2 3 27 27 H 0.97002 * 119.99875 * 179.97438 * 7 6 4 28 28 H 1.00894 * 111.00035 * 208.95097 * 12 2 1 29 29 H 1.08996 * 109.47255 * 59.99449 * 13 12 2 30 30 H 1.09005 * 109.46488 * 299.99305 * 13 12 2 31 31 H 1.08998 * 109.47178 * 300.00002 * 16 14 13 32 32 H 1.09007 * 109.46972 * 60.00442 * 16 14 13 33 33 H 1.09001 * 109.46738 * 179.97438 * 16 14 13 34 34 H 1.08997 * 109.47212 * 55.00186 * 17 14 13 35 35 H 1.08995 * 109.47163 * 294.99596 * 17 14 13 36 36 H 1.07997 * 119.99846 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99751 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 120.00025 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.1485 -2.2858 3.6036 10 1 3.1472 -0.1859 4.8160 11 1 1.1678 -1.5868 4.8164 12 7 2.0197 -0.6924 -1.1994 13 6 2.0825 0.2228 -2.3469 14 6 2.5951 -0.5330 -3.5745 15 1 3.5507 -1.0017 -3.3397 16 6 1.5825 -1.6095 -3.9703 17 6 2.7789 0.4460 -4.7359 18 6 3.3989 -0.2736 -5.9060 19 6 2.5922 -0.8816 -6.8497 20 6 3.1609 -1.5412 -7.9232 21 6 4.5361 -1.5924 -8.0533 22 6 5.3429 -0.9886 -7.1070 23 6 4.7742 -0.3252 -6.0358 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7081 1.1606 3.4845 28 1 2.9173 -1.1204 -1.0288 29 1 2.7588 1.0464 -2.1181 30 1 1.0870 0.6164 -2.5525 31 1 1.4515 -2.3068 -3.1429 32 1 0.6268 -1.1406 -4.2051 33 1 1.9475 -2.1475 -4.8451 34 1 3.4314 1.2615 -4.4239 35 1 1.8093 0.8482 -5.0290 36 1 1.5178 -0.8412 -6.7482 37 1 2.5306 -2.0165 -8.6602 38 1 4.9803 -2.1081 -8.8919 39 1 6.4174 -1.0323 -7.2063 40 1 5.4044 0.1498 -5.2985 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309336045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:04 Heat of formation + Delta-G solvation = 1.192591 kcal Electronic energy + Delta-G solvation = -17428.686292 eV Core-core repulsion = 14821.172571 eV Total energy + Delta-G solvation = -2607.513721 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.47747 -36.86115 -34.67797 -32.35425 -30.98054 -30.66760 -28.06872 -26.62862 -25.29622 -24.07681 -22.57870 -21.35874 -19.73698 -19.67682 -16.79310 -16.40874 -15.39759 -15.21828 -14.88762 -14.46193 -14.04304 -13.94503 -13.48070 -13.22037 -12.84322 -12.65966 -12.22522 -12.08713 -11.71474 -11.36938 -11.20838 -11.12170 -10.95339 -10.81063 -10.65116 -10.58619 -10.28105 -10.13889 -10.07689 -9.75932 -8.94985 -8.79444 -8.64900 -8.45926 -7.19586 -6.01124 -4.07279 1.32954 1.35430 3.29369 3.37169 3.41562 3.74389 4.41433 4.75708 4.80414 4.93532 5.06246 5.19535 5.22195 5.31150 5.44042 5.48971 5.53494 5.74309 5.80589 5.92760 6.02445 6.06798 6.08408 6.25079 6.36182 6.42687 6.44629 6.46217 6.62230 6.72838 6.79779 6.92325 6.97821 7.17391 7.27562 7.54662 7.80607 7.93320 8.30485 8.43688 8.72174 9.04548 9.58717 11.05269 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.043966 B = 0.003784 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.706481 B = 7397.461969 C = 7645.832313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.686 5.686 13 C 0.066 3.934 14 C -0.081 4.081 15 H 0.065 0.935 16 C -0.137 4.137 17 C -0.080 4.080 18 C -0.068 4.068 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.120 4.120 24 H 0.079 0.921 25 H 0.003 0.997 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.328 0.672 29 H 0.016 0.984 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.090 -2.122 -18.592 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.317 5.317 13 C -0.065 4.065 14 C -0.099 4.099 15 H 0.084 0.916 16 C -0.194 4.194 17 C -0.118 4.118 18 C -0.068 4.068 19 C -0.133 4.133 20 C -0.139 4.139 21 C -0.150 4.150 22 C -0.138 4.138 23 C -0.138 4.138 24 H 0.098 0.902 25 H 0.022 0.978 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.375 -2.247 -18.602 19.241 hybrid contribution 1.064 0.138 1.098 1.535 sum 5.439 -2.109 -17.505 18.451 Atomic orbital electron populations 1.21701 0.97961 0.99244 0.99235 1.19094 0.92583 0.92272 0.85737 0.98321 1.21322 1.31260 1.12424 0.90508 0.92201 1.24931 0.95095 0.95016 0.99063 1.69913 1.36755 1.22993 1.23291 0.86476 0.78606 0.79614 0.82903 1.19754 1.21131 1.20986 1.60698 1.31902 1.33155 1.05961 1.21947 0.99544 0.93827 0.91141 1.21103 0.99466 0.95850 0.93524 0.91638 1.21755 0.97938 0.98728 1.00967 1.20727 1.00757 0.97526 0.92781 1.19972 0.93485 0.97503 0.95813 1.21100 0.99841 0.98070 0.94298 1.21128 0.95052 0.99623 0.98145 1.21088 0.93907 1.00617 0.99387 1.21119 0.99626 0.98201 0.94893 1.21095 0.94570 0.99950 0.98142 0.90217 0.97793 0.95039 0.93028 0.85469 0.96561 0.91935 0.91221 0.93442 0.93729 0.91154 0.90978 0.86066 0.86369 0.86514 0.86372 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.19 37.16 0.34 -2.77 16 2 C 0.21 5.41 2.60 -68.87 -0.18 5.23 16 3 H 0.00 -0.02 7.80 -51.93 -0.40 -0.43 16 4 C -0.52 -14.32 8.59 -34.44 -0.30 -14.62 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.72 11.32 55.43 0.63 -25.09 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.69 -14.69 5.76 -107.95 -0.62 -15.31 16 13 C 0.07 1.18 4.87 -3.82 -0.02 1.16 16 14 C -0.08 -1.17 2.52 -90.62 -0.23 -1.40 16 15 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.14 -1.96 8.65 37.16 0.32 -1.64 16 17 C -0.08 -0.99 4.84 -27.88 -0.13 -1.13 16 18 C -0.07 -0.81 4.71 -104.62 -0.49 -1.30 16 19 C -0.12 -1.28 7.96 -39.58 -0.32 -1.60 16 20 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 21 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 23 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 24 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 25 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 26 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.33 6.92 8.22 -39.29 -0.32 6.60 16 29 H 0.02 0.30 8.05 -51.93 -0.42 -0.12 16 30 H 0.06 1.16 7.44 -51.93 -0.39 0.77 16 31 H 0.07 1.13 7.75 -51.93 -0.40 0.73 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.58 6.26 -51.93 -0.33 0.26 16 34 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 36 H 0.12 1.23 8.04 -52.49 -0.42 0.81 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 322.87 15.07 4.87 4.87 Total: -1.00 -28.94 322.87 -9.54 -38.48 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.72 Total: 3.82 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -2.67 Total: -23.18 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.01 Total: -40.40 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.94 -9.54 -38.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309336045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.674 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds