Wall clock time and date at job start Mon Mar 30 2020 06:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46821 * 2 1 4 4 C 1.50693 * 109.47125 * 120.00339 * 2 1 3 5 5 H 1.08001 * 120.00476 * 119.99976 * 4 2 1 6 6 C 1.37885 * 119.99989 * 300.00103 * 4 2 1 7 7 N 1.31514 * 119.99938 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99874 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47576 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47002 * 120.00112 * 8 6 4 11 11 H 1.48506 * 109.47136 * 239.99873 * 8 6 4 12 12 N 1.46895 * 109.47015 * 240.00251 * 2 1 3 13 13 C 1.46907 * 110.99924 * 85.00280 * 12 2 1 14 14 C 1.53005 * 109.47038 * 180.02562 * 13 12 2 15 15 H 1.09002 * 109.46833 * 304.99218 * 14 13 12 16 16 C 1.52996 * 109.47305 * 64.99392 * 14 13 12 17 17 C 1.53001 * 109.46716 * 184.99846 * 14 13 12 18 18 C 1.50706 * 109.46607 * 174.99483 * 17 14 13 19 19 C 1.38238 * 119.99744 * 90.00198 * 18 17 14 20 20 C 1.38234 * 119.99693 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00240 * 359.97438 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.26327 * 21 20 19 23 23 C 1.38234 * 120.00173 * 269.97579 * 18 17 14 24 24 H 1.08995 * 109.47298 * 299.99843 * 1 2 3 25 25 H 1.09000 * 109.47269 * 59.99782 * 1 2 3 26 26 H 1.09007 * 109.46937 * 179.97438 * 1 2 3 27 27 H 0.97002 * 119.99875 * 179.97438 * 7 6 4 28 28 H 1.00894 * 111.00035 * 208.95097 * 12 2 1 29 29 H 1.08996 * 109.47255 * 59.99449 * 13 12 2 30 30 H 1.09005 * 109.46488 * 299.99305 * 13 12 2 31 31 H 1.08998 * 109.47178 * 300.00002 * 16 14 13 32 32 H 1.09007 * 109.46972 * 60.00442 * 16 14 13 33 33 H 1.09001 * 109.46738 * 179.97438 * 16 14 13 34 34 H 1.08997 * 109.47212 * 55.00186 * 17 14 13 35 35 H 1.08995 * 109.47163 * 294.99596 * 17 14 13 36 36 H 1.07997 * 119.99846 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99751 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 120.00025 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.1485 -2.2858 3.6036 10 1 3.1472 -0.1859 4.8160 11 1 1.1678 -1.5868 4.8164 12 7 2.0197 -0.6924 -1.1994 13 6 2.0825 0.2228 -2.3469 14 6 2.5951 -0.5330 -3.5745 15 1 3.5507 -1.0017 -3.3397 16 6 1.5825 -1.6095 -3.9703 17 6 2.7789 0.4460 -4.7359 18 6 3.3989 -0.2736 -5.9060 19 6 2.5922 -0.8816 -6.8497 20 6 3.1609 -1.5412 -7.9232 21 6 4.5361 -1.5924 -8.0533 22 6 5.3429 -0.9886 -7.1070 23 6 4.7742 -0.3252 -6.0358 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7081 1.1606 3.4845 28 1 2.9173 -1.1204 -1.0288 29 1 2.7588 1.0464 -2.1181 30 1 1.0870 0.6164 -2.5525 31 1 1.4515 -2.3068 -3.1429 32 1 0.6268 -1.1406 -4.2051 33 1 1.9475 -2.1475 -4.8451 34 1 3.4314 1.2615 -4.4239 35 1 1.8093 0.8482 -5.0290 36 1 1.5178 -0.8412 -6.7482 37 1 2.5306 -2.0165 -8.6602 38 1 4.9803 -2.1081 -8.8919 39 1 6.4174 -1.0323 -7.2063 40 1 5.4044 0.1498 -5.2985 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309336045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:04 Heat of formation + Delta-G solvation = -13.839140 kcal Electronic energy + Delta-G solvation = -17429.338117 eV Core-core repulsion = 14821.172571 eV Total energy + Delta-G solvation = -2608.165546 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33065 -38.34305 -36.26807 -34.13085 -31.98397 -31.71292 -29.80879 -27.68506 -27.35660 -25.57554 -23.37957 -22.40867 -21.59550 -20.92777 -18.46712 -17.58173 -16.89308 -16.36624 -16.13858 -15.81596 -15.46993 -15.37062 -14.77581 -14.41605 -14.18685 -13.78913 -13.52490 -13.38673 -13.16580 -13.00483 -12.80333 -12.61305 -12.47184 -12.20987 -12.17032 -12.01107 -11.88160 -11.73945 -11.52385 -11.27689 -10.85454 -10.57946 -9.74251 -9.50476 -9.00778 -8.13780 -6.28006 0.51941 0.56383 1.40949 1.42621 1.54684 2.41301 2.93153 3.14705 3.61502 3.88032 3.95713 4.15300 4.23146 4.29995 4.37468 4.40752 4.57465 4.69386 4.75006 4.78364 4.88561 4.90074 4.94579 5.07437 5.09376 5.15153 5.23163 5.24453 5.27051 5.42856 5.50905 5.56521 5.64731 5.67857 5.68497 5.82786 5.87156 6.19856 6.22592 6.48969 6.79693 7.01609 7.42671 8.92184 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.043966 B = 0.003784 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.706481 B = 7397.461969 C = 7645.832313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.214 3.786 3 H -0.033 1.033 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.682 5.682 13 C 0.068 3.932 14 C -0.069 4.069 15 H 0.062 0.938 16 C -0.129 4.129 17 C -0.072 4.072 18 C -0.083 4.083 19 C -0.126 4.126 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.135 4.135 24 H 0.056 0.944 25 H 0.020 0.980 26 H 0.027 0.973 27 H 0.262 0.738 28 H 0.330 0.670 29 H 0.010 0.990 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.812 -3.126 -19.810 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 H -0.016 1.016 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.313 5.313 13 C -0.062 4.062 14 C -0.088 4.088 15 H 0.080 0.920 16 C -0.187 4.187 17 C -0.110 4.110 18 C -0.083 4.083 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.152 4.152 22 C -0.145 4.145 23 C -0.153 4.153 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.147 0.853 29 H 0.028 0.972 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.102 -3.255 -19.841 20.744 hybrid contribution 0.854 0.466 1.394 1.700 sum 5.956 -2.789 -18.447 19.585 Atomic orbital electron populations 1.21523 0.97782 0.98770 0.98907 1.18914 0.92727 0.90669 0.87114 1.01579 1.21638 1.31584 1.12640 0.91668 0.92273 1.25760 0.95187 0.95696 1.02123 1.70037 1.37536 1.24160 1.24104 0.85421 0.78120 0.78590 0.78962 1.19029 1.20596 1.20558 1.60623 1.32009 1.33347 1.05273 1.22000 0.99354 0.93574 0.91267 1.20966 0.99051 0.96011 0.92739 0.91985 1.21677 0.98097 0.98222 1.00674 1.20608 1.01232 0.96968 0.92208 1.19948 0.93910 0.98451 0.96029 1.21270 1.00246 0.98268 0.94606 1.21440 0.95661 0.99218 0.98175 1.21445 0.93925 1.00068 0.99809 1.21412 1.00854 0.97741 0.94532 1.21275 0.94581 1.00517 0.98888 0.92559 0.96056 0.95380 0.92846 0.85292 0.97156 0.92429 0.93300 0.93087 0.92267 0.91059 0.90477 0.85439 0.84288 0.84165 0.84507 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.71 9.19 71.98 0.66 -5.05 16 2 C 0.21 11.20 2.60 44.17 0.11 11.31 16 3 H -0.03 -1.93 7.80 -2.39 -0.02 -1.95 16 4 C -0.54 -30.03 8.59 25.60 0.22 -29.81 16 5 H 0.06 3.24 7.62 -2.91 -0.02 3.22 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -53.69 11.32 21.45 0.24 -53.45 16 8 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 N -0.68 -29.40 5.76 -495.44 -2.85 -32.25 16 13 C 0.07 2.43 4.87 86.30 0.42 2.85 16 14 C -0.07 -1.95 2.52 -10.79 -0.03 -1.98 16 15 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 16 C -0.13 -3.58 8.65 71.98 0.62 -2.96 16 17 C -0.07 -1.72 4.84 29.85 0.14 -1.58 16 18 C -0.08 -1.87 4.71 -19.86 -0.09 -1.97 16 19 C -0.13 -2.58 7.96 22.27 0.18 -2.40 16 20 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 21 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 22 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 23 C -0.13 -2.88 9.70 22.27 0.22 -2.66 16 24 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 25 H 0.02 0.96 7.45 -2.39 -0.02 0.95 16 26 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.33 14.00 8.22 -89.70 -0.74 13.26 16 29 H 0.01 0.38 8.05 -2.39 -0.02 0.36 16 30 H 0.06 2.12 7.44 -2.38 -0.02 2.10 16 31 H 0.05 1.55 7.75 -2.39 -0.02 1.53 16 32 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.06 1.46 6.26 -2.39 -0.01 1.45 16 34 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 35 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 36 H 0.13 2.36 8.04 -2.91 -0.02 2.34 16 37 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 38 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 39 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.12 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -61.27 322.87 3.25 -58.02 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.26 Total: 21.14 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 3.58 Total: -39.39 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -2.61 Total: -85.70 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -61.27 3.25 -58.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309336045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.179 kcal (2) G-P(sol) polarization free energy of solvation -61.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds