Wall clock time and date at job start Mon Mar 30 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46970 * 2 1 4 4 C 1.53002 * 109.46770 * 59.99950 * 3 2 1 5 5 C 1.52999 * 109.46861 * 299.99992 * 3 2 1 6 6 C 1.50703 * 109.46956 * 179.97438 * 3 2 1 7 7 C 1.38254 * 120.00175 * 359.97438 * 6 3 2 8 8 C 1.38210 * 120.00264 * 179.97438 * 7 6 3 9 9 C 1.38263 * 119.99773 * 359.78622 * 8 7 6 10 10 C 1.38218 * 119.99402 * 0.49101 * 9 8 7 11 11 C 1.50700 * 119.99475 * 179.76710 * 10 9 8 12 12 H 1.09004 * 109.47210 * 159.72438 * 11 10 9 13 13 N 1.46899 * 109.47483 * 39.72107 * 11 10 9 14 14 C 1.50702 * 109.46869 * 279.72145 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.38211 * 119.99840 * 180.02562 * 6 3 2 23 23 H 1.08996 * 109.47465 * 299.99979 * 1 2 3 24 24 H 1.09003 * 109.47298 * 59.99881 * 1 2 3 25 25 H 1.09009 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47465 * 240.00021 * 2 1 3 27 27 H 1.09003 * 109.47298 * 120.00119 * 2 1 3 28 28 H 1.09002 * 109.46582 * 180.02562 * 4 3 2 29 29 H 1.08993 * 109.46969 * 299.99700 * 4 3 2 30 30 H 1.09003 * 109.47071 * 60.00142 * 4 3 2 31 31 H 1.08996 * 109.47105 * 299.99692 * 5 3 2 32 32 H 1.09004 * 109.47158 * 60.00038 * 5 3 2 33 33 H 1.09002 * 109.46524 * 179.97438 * 5 3 2 34 34 H 1.08008 * 119.99924 * 359.97438 * 7 6 3 35 35 H 1.07998 * 120.00301 * 180.02562 * 8 7 6 36 36 H 1.07992 * 120.00209 * 180.25750 * 9 8 7 37 37 H 1.00902 * 111.00292 * 176.04974 * 13 11 10 38 38 H 1.00903 * 111.00048 * 300.00270 * 13 11 10 39 39 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 40 40 H 1.08006 * 120.00010 * 359.97438 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5299 2.1638 1.2493 5 6 1.5299 2.1638 -1.2493 6 6 3.5470 1.4426 0.0006 7 6 4.2383 0.2453 0.0016 8 6 5.6204 0.2453 0.0017 9 6 6.3117 1.4427 -0.0037 10 6 5.6205 2.6396 0.0011 11 6 6.3740 3.9447 0.0004 12 1 5.7194 4.7420 -0.3518 13 7 7.5379 3.8378 -0.8893 14 6 6.8383 4.2573 1.3997 15 1 6.6109 3.5785 2.2084 16 6 7.5588 5.4067 1.6463 17 7 7.8360 6.2330 0.6615 18 14 8.1409 5.7902 3.3793 19 1 7.7029 4.7099 4.2991 20 1 9.6231 5.8821 3.3947 21 1 7.5603 7.0834 3.8218 22 6 4.2380 2.6395 0.0013 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8928 3.1916 1.2490 29 1 0.4400 2.1637 1.2492 30 1 1.8933 1.6499 2.1393 31 1 1.8933 1.6500 -2.1392 32 1 0.4399 2.1637 -1.2492 33 1 1.8929 3.1916 -1.2490 34 1 3.6983 -0.6901 0.0024 35 1 6.1604 -0.6900 0.0021 36 1 7.3916 1.4427 -0.0079 37 1 8.0235 4.7197 -0.9572 38 1 8.1606 3.1049 -0.5838 39 1 8.3426 7.0418 0.8351 40 1 3.6980 3.5749 0.0009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309339723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:38 Heat of formation + Delta-G solvation = -3.686180 kcal Electronic energy + Delta-G solvation = -18172.663588 eV Core-core repulsion = 15564.938308 eV Total energy + Delta-G solvation = -2607.725281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.49836 -36.87453 -34.38867 -31.53664 -31.06819 -29.25740 -28.66666 -27.08477 -25.92208 -24.40316 -22.91384 -21.24791 -20.25784 -17.99796 -16.48999 -16.37063 -14.90646 -14.74349 -14.63003 -14.54901 -14.13187 -13.36020 -13.32837 -13.01436 -12.87445 -12.29869 -12.20621 -11.86514 -11.73869 -11.57410 -11.40494 -11.11344 -11.04968 -11.00670 -10.83385 -10.67871 -10.51094 -10.23572 -10.00216 -9.89970 -9.46100 -8.66215 -8.03247 -7.80180 -7.16579 -6.08369 -4.25200 2.13391 2.23418 3.20796 3.29659 3.34904 4.30801 4.58264 4.83969 4.90315 5.07458 5.13839 5.42999 5.47252 5.52764 5.62510 5.67420 5.73845 5.85809 5.93963 5.99496 6.02134 6.07466 6.10045 6.14237 6.20554 6.33055 6.37309 6.54826 6.56110 6.70960 6.75660 6.84857 7.21501 7.26355 7.33284 7.73978 7.75350 7.89038 8.12740 8.68497 8.94705 9.13056 9.46644 10.88698 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.028724 B = 0.005717 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.560467 B = 4896.649964 C = 5174.555463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.021 4.021 4 C -0.140 4.140 5 C -0.139 4.139 6 C -0.077 4.077 7 C -0.150 4.150 8 C -0.126 4.126 9 C -0.114 4.114 10 C -0.021 4.021 11 C 0.239 3.761 12 H 0.045 0.955 13 N -0.850 5.850 14 C -0.541 4.541 15 H 0.056 0.944 16 C 0.065 3.935 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.118 4.118 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.355 0.645 38 H 0.311 0.689 39 H 0.265 0.735 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.631 -9.926 -1.419 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.021 4.021 4 C -0.197 4.197 5 C -0.196 4.196 6 C -0.077 4.077 7 C -0.168 4.168 8 C -0.144 4.144 9 C -0.133 4.133 10 C -0.022 4.022 11 C 0.129 3.871 12 H 0.063 0.937 13 N -0.380 5.380 14 C -0.580 4.580 15 H 0.074 0.926 16 C -0.137 4.137 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.137 4.137 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.171 0.829 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.082 -9.902 -2.042 15.001 hybrid contribution 1.036 0.573 1.919 2.255 sum -10.046 -9.329 -0.123 13.711 Atomic orbital electron populations 1.21917 0.96257 1.01107 1.02014 1.21634 0.95349 0.96118 1.01908 1.19422 0.91499 0.95299 0.95849 1.21933 1.00161 1.00730 0.96845 1.21925 1.00211 1.00623 0.96834 1.19611 0.93815 0.93354 1.00926 1.20839 0.94028 0.97029 1.04889 1.21003 0.94227 0.97517 1.01658 1.20909 0.99726 0.91870 1.00771 1.20433 0.93181 0.96642 0.91923 1.18008 0.89773 0.88378 0.90970 0.93725 1.59538 1.12858 1.11828 1.53743 1.21871 1.34731 1.06632 0.94802 0.92577 1.25025 0.95718 0.95599 0.97349 1.69758 1.39900 1.12484 1.31179 0.86476 0.78363 0.78318 0.84498 1.19744 1.20942 1.20846 1.20792 0.93928 0.96865 1.02111 0.92486 0.92501 0.93251 0.91859 0.91862 0.92192 0.92632 0.92717 0.92730 0.92609 0.92287 0.87011 0.87403 0.86770 0.82914 0.87959 0.92550 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.21 37.16 0.34 -1.15 16 2 C -0.11 -1.29 3.65 -26.73 -0.10 -1.39 16 3 C -0.02 -0.28 0.63 -155.65 -0.10 -0.38 16 4 C -0.14 -1.83 7.93 37.16 0.29 -1.54 16 5 C -0.14 -1.77 7.94 37.16 0.29 -1.47 16 6 C -0.08 -1.30 4.76 -104.62 -0.50 -1.80 16 7 C -0.15 -2.45 8.98 -39.59 -0.36 -2.81 16 8 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 9 C -0.11 -2.31 9.29 -39.58 -0.37 -2.68 16 10 C -0.02 -0.47 4.89 -104.63 -0.51 -0.98 16 11 C 0.24 6.02 2.95 -70.02 -0.21 5.81 16 12 H 0.04 1.24 8.00 -51.93 -0.42 0.82 16 13 N -0.85 -20.59 9.01 -6.65 -0.06 -20.65 16 14 C -0.54 -14.66 8.71 -34.44 -0.30 -14.96 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.07 1.76 5.38 -17.82 -0.10 1.67 16 17 N -0.89 -24.72 11.53 55.43 0.64 -24.08 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.12 -2.35 8.34 -39.59 -0.33 -2.68 16 23 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 24 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 25 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.06 0.72 7.52 -51.93 -0.39 0.33 16 27 H 0.06 0.74 7.51 -51.93 -0.39 0.35 16 28 H 0.06 0.85 7.39 -51.93 -0.38 0.47 16 29 H 0.05 0.61 6.43 -51.93 -0.33 0.28 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.60 6.43 -51.93 -0.33 0.27 16 33 H 0.06 0.80 7.39 -51.93 -0.38 0.42 16 34 H 0.11 1.54 5.90 -52.48 -0.31 1.23 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.11 2.27 6.65 -52.49 -0.35 1.92 16 37 H 0.35 9.15 7.07 -39.29 -0.28 8.88 16 38 H 0.31 7.15 7.33 -39.29 -0.29 6.86 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.11 2.20 7.08 -52.48 -0.37 1.83 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -27.60 310.19 -8.22 -35.82 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -6.13 Total: 15.13 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -2.33 Total: -26.95 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.58 Total: -44.72 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.60 -8.22 -35.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309339723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.133 kcal (2) G-P(sol) polarization free energy of solvation -27.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds