Wall clock time and date at job start Mon Mar 30 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46970 * 2 1 4 4 C 1.53002 * 109.46770 * 59.99950 * 3 2 1 5 5 C 1.52999 * 109.46861 * 299.99992 * 3 2 1 6 6 C 1.50703 * 109.46956 * 179.97438 * 3 2 1 7 7 C 1.38254 * 120.00175 * 359.97438 * 6 3 2 8 8 C 1.38210 * 120.00264 * 179.97438 * 7 6 3 9 9 C 1.38263 * 119.99773 * 359.78622 * 8 7 6 10 10 C 1.38218 * 119.99402 * 0.49101 * 9 8 7 11 11 C 1.50700 * 119.99475 * 179.76710 * 10 9 8 12 12 H 1.09004 * 109.47210 * 159.72438 * 11 10 9 13 13 N 1.46899 * 109.47483 * 39.72107 * 11 10 9 14 14 C 1.50702 * 109.46869 * 279.72145 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.38211 * 119.99840 * 180.02562 * 6 3 2 23 23 H 1.08996 * 109.47465 * 299.99979 * 1 2 3 24 24 H 1.09003 * 109.47298 * 59.99881 * 1 2 3 25 25 H 1.09009 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47465 * 240.00021 * 2 1 3 27 27 H 1.09003 * 109.47298 * 120.00119 * 2 1 3 28 28 H 1.09002 * 109.46582 * 180.02562 * 4 3 2 29 29 H 1.08993 * 109.46969 * 299.99700 * 4 3 2 30 30 H 1.09003 * 109.47071 * 60.00142 * 4 3 2 31 31 H 1.08996 * 109.47105 * 299.99692 * 5 3 2 32 32 H 1.09004 * 109.47158 * 60.00038 * 5 3 2 33 33 H 1.09002 * 109.46524 * 179.97438 * 5 3 2 34 34 H 1.08008 * 119.99924 * 359.97438 * 7 6 3 35 35 H 1.07998 * 120.00301 * 180.02562 * 8 7 6 36 36 H 1.07992 * 120.00209 * 180.25750 * 9 8 7 37 37 H 1.00902 * 111.00292 * 176.04974 * 13 11 10 38 38 H 1.00903 * 111.00048 * 300.00270 * 13 11 10 39 39 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 40 40 H 1.08006 * 120.00010 * 359.97438 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5299 2.1638 1.2493 5 6 1.5299 2.1638 -1.2493 6 6 3.5470 1.4426 0.0006 7 6 4.2383 0.2453 0.0016 8 6 5.6204 0.2453 0.0017 9 6 6.3117 1.4427 -0.0037 10 6 5.6205 2.6396 0.0011 11 6 6.3740 3.9447 0.0004 12 1 5.7194 4.7420 -0.3518 13 7 7.5379 3.8378 -0.8893 14 6 6.8383 4.2573 1.3997 15 1 6.6109 3.5785 2.2084 16 6 7.5588 5.4067 1.6463 17 7 7.8360 6.2330 0.6615 18 14 8.1409 5.7902 3.3793 19 1 7.7029 4.7099 4.2991 20 1 9.6231 5.8821 3.3947 21 1 7.5603 7.0834 3.8218 22 6 4.2380 2.6395 0.0013 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8928 3.1916 1.2490 29 1 0.4400 2.1637 1.2492 30 1 1.8933 1.6499 2.1393 31 1 1.8933 1.6500 -2.1392 32 1 0.4399 2.1637 -1.2492 33 1 1.8929 3.1916 -1.2490 34 1 3.6983 -0.6901 0.0024 35 1 6.1604 -0.6900 0.0021 36 1 7.3916 1.4427 -0.0079 37 1 8.0235 4.7197 -0.9572 38 1 8.1606 3.1049 -0.5838 39 1 8.3426 7.0418 0.8351 40 1 3.6980 3.5749 0.0009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309339723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:38 Heat of formation + Delta-G solvation = -18.674309 kcal Electronic energy + Delta-G solvation = -18173.313522 eV Core-core repulsion = 15564.938308 eV Total energy + Delta-G solvation = -2608.375215 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83449 -38.22130 -36.18658 -33.48695 -32.21062 -30.82703 -29.90617 -28.12481 -27.95099 -25.49590 -24.64616 -22.54170 -21.80039 -19.26769 -18.53775 -17.86964 -16.67365 -16.26487 -15.92280 -15.68907 -15.53352 -14.90943 -14.71318 -14.33132 -14.28424 -13.90656 -13.46437 -13.20800 -13.14034 -12.89733 -12.81654 -12.74005 -12.61299 -12.42866 -12.17776 -12.03543 -11.90662 -11.61187 -11.42158 -11.20023 -11.02464 -10.74071 -9.54081 -9.34799 -9.14602 -8.14216 -6.40984 0.67361 0.74020 1.33177 1.36088 1.47649 2.33963 3.00910 3.10018 3.74337 3.86228 4.13300 4.24684 4.29591 4.38157 4.43167 4.56952 4.62064 4.67286 4.74169 4.83203 4.85418 4.90249 5.02644 5.05589 5.11860 5.17916 5.21714 5.28735 5.33716 5.37208 5.48882 5.55606 5.58875 5.59883 5.79881 5.88546 5.96935 6.18156 6.35572 6.61346 6.89651 7.08582 7.35510 8.79845 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.028724 B = 0.005717 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.560467 B = 4896.649964 C = 5174.555463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.021 4.021 4 C -0.138 4.138 5 C -0.137 4.137 6 C -0.071 4.071 7 C -0.143 4.143 8 C -0.120 4.120 9 C -0.133 4.133 10 C -0.053 4.053 11 C 0.243 3.757 12 H 0.005 0.995 13 N -0.842 5.842 14 C -0.556 4.556 15 H 0.044 0.956 16 C 0.021 3.979 17 N -0.916 5.916 18 Si 0.960 3.040 19 H -0.274 1.274 20 H -0.275 1.275 21 H -0.278 1.278 22 C -0.135 4.135 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.109 0.891 37 H 0.344 0.656 38 H 0.318 0.682 39 H 0.268 0.732 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.955 -12.148 -0.814 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.021 4.021 4 C -0.195 4.195 5 C -0.194 4.194 6 C -0.071 4.071 7 C -0.160 4.160 8 C -0.138 4.138 9 C -0.151 4.151 10 C -0.054 4.054 11 C 0.133 3.867 12 H 0.023 0.977 13 N -0.371 5.371 14 C -0.596 4.596 15 H 0.062 0.938 16 C -0.179 4.179 17 N -0.556 5.556 18 Si 0.785 3.215 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.204 1.204 22 C -0.154 4.154 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.127 0.873 37 H 0.159 0.841 38 H 0.128 0.872 39 H 0.077 0.923 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.410 -12.136 -1.444 17.417 hybrid contribution 1.393 1.234 1.693 2.516 sum -11.017 -10.902 0.249 15.501 Atomic orbital electron populations 1.21896 0.94564 1.02216 1.02354 1.21615 0.96841 0.94030 1.02216 1.19517 0.89080 0.97302 0.96229 1.21924 1.01744 0.99367 0.96496 1.21913 1.01741 0.99365 0.96401 1.19997 0.95926 0.92373 0.98818 1.21292 0.93861 0.98134 1.02760 1.21358 0.94930 0.97600 0.99894 1.20954 0.99675 0.92387 1.02103 1.20265 0.94104 0.95868 0.95156 1.17793 0.89554 0.89296 0.90028 0.97688 1.59499 1.12684 1.11333 1.53557 1.22030 1.35288 1.06868 0.95392 0.93813 1.25763 0.95712 0.95349 1.01041 1.69856 1.40135 1.12739 1.32862 0.85481 0.78110 0.77936 0.79926 1.19822 1.20052 1.20371 1.20802 0.93283 0.97911 1.03391 0.92239 0.92068 0.91836 0.91387 0.91636 0.94241 0.90106 0.93158 0.92816 0.90154 0.94166 0.83422 0.84047 0.87282 0.84136 0.87176 0.92268 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.21 71.98 0.66 -1.68 16 2 C -0.11 -2.12 3.65 30.60 0.11 -2.01 16 3 C -0.02 -0.53 0.63 -52.92 -0.03 -0.57 16 4 C -0.14 -3.45 7.93 71.98 0.57 -2.88 16 5 C -0.14 -3.29 7.94 71.98 0.57 -2.72 16 6 C -0.07 -2.33 4.76 -19.87 -0.09 -2.42 16 7 C -0.14 -4.29 8.98 22.27 0.20 -4.09 16 8 C -0.12 -3.92 10.05 22.27 0.22 -3.70 16 9 C -0.13 -5.39 9.29 22.27 0.21 -5.18 16 10 C -0.05 -2.45 4.89 -19.87 -0.10 -2.55 16 11 C 0.24 12.94 2.95 43.42 0.13 13.07 16 12 H 0.01 0.31 8.00 -2.38 -0.02 0.29 16 13 N -0.84 -42.51 9.01 -174.95 -1.58 -44.08 16 14 C -0.56 -31.28 8.71 25.60 0.22 -31.05 16 15 H 0.04 2.51 7.74 -2.91 -0.02 2.49 16 16 C 0.02 1.18 5.38 84.66 0.46 1.64 16 17 N -0.92 -51.93 11.53 21.45 0.25 -51.69 16 18 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 C -0.14 -5.55 8.34 22.27 0.19 -5.37 16 23 H 0.06 0.89 6.43 -2.39 -0.02 0.87 16 24 H 0.06 0.89 6.43 -2.39 -0.02 0.87 16 25 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.07 1.27 7.52 -2.39 -0.02 1.26 16 27 H 0.06 1.26 7.51 -2.39 -0.02 1.24 16 28 H 0.04 1.13 7.39 -2.39 -0.02 1.11 16 29 H 0.08 1.59 6.43 -2.39 -0.02 1.57 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.52 6.43 -2.39 -0.02 1.50 16 33 H 0.04 1.10 7.39 -2.39 -0.02 1.08 16 34 H 0.15 3.40 5.90 -2.91 -0.02 3.38 16 35 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 36 H 0.11 4.41 6.65 -2.91 -0.02 4.39 16 37 H 0.34 18.50 7.07 -89.69 -0.63 17.87 16 38 H 0.32 15.12 7.33 -89.69 -0.66 14.46 16 39 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 40 H 0.10 4.21 7.08 -2.91 -0.02 4.19 16 Total: -1.00 -60.97 310.19 3.76 -57.22 By element: Atomic # 1 Polarization: 42.49 SS G_CDS: -0.25 Total: 42.24 kcal Atomic # 6 Polarization: -52.83 SS G_CDS: 3.31 Total: -49.51 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -1.33 Total: -95.77 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -60.97 3.76 -57.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309339723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.543 kcal (2) G-P(sol) polarization free energy of solvation -60.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds