Wall clock time and date at job start Mon Mar 30 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47254 * 2 1 4 4 C 1.52997 * 109.47076 * 59.99720 * 3 2 1 5 5 C 1.53002 * 109.46860 * 299.99755 * 3 2 1 6 6 C 1.50700 * 109.46982 * 179.97438 * 3 2 1 7 7 C 1.38251 * 119.99913 * 0.02562 * 6 3 2 8 8 C 1.38223 * 119.99605 * 180.02562 * 7 6 3 9 9 C 1.38251 * 120.00156 * 359.97438 * 8 7 6 10 10 C 1.38216 * 120.00055 * 359.96475 * 9 8 7 11 11 C 1.50693 * 119.99851 * 180.02562 * 10 9 8 12 12 H 1.09010 * 109.46918 * 199.99533 * 11 10 9 13 13 N 1.46898 * 109.47183 * 319.99295 * 11 10 9 14 14 C 1.50696 * 109.47459 * 79.99768 * 11 10 9 15 15 H 1.07995 * 120.00332 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99983 * 180.02562 * 14 11 10 17 17 N 1.31517 * 120.00210 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00019 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.38213 * 119.99624 * 180.20702 * 6 3 2 23 23 H 1.08999 * 109.47240 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46812 * 300.00388 * 1 2 3 25 25 H 1.09002 * 109.46781 * 59.99980 * 1 2 3 26 26 H 1.08993 * 109.47106 * 239.99581 * 2 1 3 27 27 H 1.09002 * 109.47012 * 119.99520 * 2 1 3 28 28 H 1.08996 * 109.47168 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47707 * 300.00159 * 4 3 2 30 30 H 1.09002 * 109.47364 * 60.00374 * 4 3 2 31 31 H 1.08993 * 109.47119 * 300.00186 * 5 3 2 32 32 H 1.09001 * 109.46782 * 59.99992 * 5 3 2 33 33 H 1.08996 * 109.46906 * 179.97438 * 5 3 2 34 34 H 1.07996 * 120.00651 * 359.97438 * 7 6 3 35 35 H 1.08000 * 119.99892 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.00348 * 179.97438 * 9 8 7 37 37 H 1.00899 * 111.00188 * 296.04594 * 13 11 10 38 38 H 1.00896 * 111.00080 * 60.00784 * 13 11 10 39 39 H 0.97000 * 119.99462 * 359.97438 * 17 16 14 40 40 H 1.08004 * 120.00591 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5301 2.1637 -1.2493 6 6 3.5471 1.4424 0.0006 7 6 4.2383 0.2451 0.0006 8 6 5.6205 0.2451 0.0017 9 6 6.3118 1.4424 0.0023 10 6 5.6207 2.6394 0.0011 11 6 6.3743 3.9444 0.0013 12 1 5.7192 4.7422 0.3517 13 7 7.5370 3.8384 0.8928 14 6 6.8405 4.2555 -1.3976 15 1 6.6143 3.5759 -2.2059 16 6 7.5570 5.4071 -1.6454 17 7 7.8330 6.2345 -0.6610 18 14 8.1356 5.7924 -3.3792 19 1 9.4824 5.2047 -3.5936 20 1 7.1816 5.2141 -4.3595 21 1 8.2028 7.2644 -3.5631 22 6 4.2381 2.6394 0.0051 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.8930 3.1915 1.2490 29 1 0.4401 2.1638 1.2492 30 1 1.8934 1.6500 2.1392 31 1 1.8934 1.6498 -2.1392 32 1 0.4401 2.1637 -1.2493 33 1 1.8931 3.1915 -1.2491 34 1 3.6983 -0.6902 0.0005 35 1 6.1605 -0.6902 0.0021 36 1 7.3918 1.4424 0.0036 37 1 7.2478 3.6942 1.8486 38 1 8.1600 3.1053 0.5889 39 1 7.5322 6.0346 0.2392 40 1 3.6982 3.5748 0.0085 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309339724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:41 Heat of formation + Delta-G solvation = -1.480429 kcal Electronic energy + Delta-G solvation = -18214.249179 eV Core-core repulsion = 15606.619547 eV Total energy + Delta-G solvation = -2607.629632 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.66552 -37.07474 -34.53725 -31.44505 -31.19443 -29.40754 -28.79644 -27.18401 -25.59527 -24.44773 -22.79350 -21.35779 -20.51398 -18.25066 -16.78401 -16.39597 -15.02104 -14.81306 -14.72197 -14.48246 -13.78119 -13.63465 -13.48306 -13.40207 -13.09164 -12.39110 -12.32333 -12.00017 -11.87796 -11.74540 -11.50047 -11.15766 -11.12440 -11.03010 -10.72037 -10.61639 -10.36372 -10.15822 -10.05609 -9.93900 -8.87579 -8.31669 -8.18121 -7.84806 -7.43224 -6.15571 -3.98376 1.94275 2.04179 3.49047 3.52050 3.67769 4.34641 4.63613 4.73554 4.79533 4.97857 5.32235 5.37836 5.43115 5.45857 5.48905 5.53780 5.62133 5.76639 5.82880 5.85447 5.91278 5.97701 5.98765 6.00884 6.09666 6.13286 6.20398 6.28294 6.43048 6.46316 6.57344 6.67986 6.97343 7.05191 7.14173 7.47752 7.62615 8.02005 8.32873 8.68720 8.79116 9.08240 9.85062 11.24088 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.028467 B = 0.005754 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.346403 B = 4864.781553 C = 5144.399239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.022 4.022 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.074 4.074 7 C -0.148 4.148 8 C -0.122 4.122 9 C -0.126 4.126 10 C -0.063 4.063 11 C 0.236 3.764 12 H 0.036 0.964 13 N -0.829 5.829 14 C -0.606 4.606 15 H 0.046 0.954 16 C 0.038 3.962 17 N -0.892 5.892 18 Si 1.066 2.934 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.116 4.116 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.301 0.699 38 H 0.326 0.674 39 H 0.290 0.710 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.983 -11.564 2.518 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.022 4.022 4 C -0.196 4.196 5 C -0.197 4.197 6 C -0.074 4.074 7 C -0.166 4.166 8 C -0.140 4.140 9 C -0.145 4.145 10 C -0.065 4.065 11 C 0.128 3.872 12 H 0.053 0.947 13 N -0.357 5.357 14 C -0.645 4.645 15 H 0.064 0.936 16 C -0.172 4.172 17 N -0.526 5.526 18 Si 0.895 3.105 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.211 1.211 22 C -0.135 4.135 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.102 0.898 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.983 -9.668 1.405 14.699 hybrid contribution -1.060 -2.248 0.996 2.678 sum -12.043 -11.916 2.401 17.111 Atomic orbital electron populations 1.21917 0.96119 1.01203 1.02061 1.21637 0.95498 0.95995 1.01898 1.19441 0.91319 0.95443 0.95965 1.21924 1.00413 1.00511 0.96739 1.21931 1.00277 1.00714 0.96766 1.19693 0.94015 0.93363 1.00355 1.20885 0.94004 0.97170 1.04527 1.21007 0.94277 0.97487 1.01264 1.20928 0.99672 0.92089 1.01798 1.21452 0.94040 0.98211 0.92842 1.18355 0.87371 0.87415 0.94101 0.94664 1.59464 1.19549 1.53193 1.03480 1.21690 1.41387 1.09998 0.91382 0.93608 1.25621 0.94016 0.92677 1.04889 1.70524 1.41693 1.37335 1.03071 0.83617 0.76099 0.76091 0.74688 1.21620 1.21760 1.21119 1.20857 0.93963 0.96911 1.01734 0.93161 0.92490 0.92413 0.91820 0.91903 0.92357 0.92430 0.92803 0.92646 0.92488 0.92185 0.86793 0.87229 0.86857 0.88844 0.86124 0.89775 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.21 37.16 0.34 -1.10 16 2 C -0.11 -1.25 3.65 -26.73 -0.10 -1.35 16 3 C -0.02 -0.28 0.63 -155.66 -0.10 -0.38 16 4 C -0.14 -1.69 7.93 37.16 0.29 -1.40 16 5 C -0.14 -1.81 7.94 37.16 0.29 -1.51 16 6 C -0.07 -1.22 4.76 -104.63 -0.50 -1.71 16 7 C -0.15 -2.35 8.98 -39.58 -0.36 -2.70 16 8 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 9 C -0.13 -2.47 9.29 -39.58 -0.37 -2.84 16 10 C -0.06 -1.35 4.88 -104.62 -0.51 -1.87 16 11 C 0.24 5.87 2.47 -70.02 -0.17 5.70 16 12 H 0.04 0.95 7.87 -51.92 -0.41 0.54 16 13 N -0.83 -19.21 7.62 -6.65 -0.05 -19.26 16 14 C -0.61 -17.03 8.70 -34.44 -0.30 -17.33 16 15 H 0.05 1.32 7.74 -52.49 -0.41 0.92 16 16 C 0.04 1.08 5.39 -17.82 -0.10 0.98 16 17 N -0.89 -27.07 13.50 55.43 0.75 -26.32 16 18 Si 1.07 25.61 29.90 -169.99 -5.08 20.52 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.12 -2.24 8.34 -39.58 -0.33 -2.57 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 25 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 26 H 0.06 0.72 7.51 -51.93 -0.39 0.33 16 27 H 0.06 0.69 7.51 -51.93 -0.39 0.30 16 28 H 0.06 0.76 7.38 -51.93 -0.38 0.38 16 29 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 33 H 0.06 0.84 7.40 -51.93 -0.38 0.46 16 34 H 0.11 1.52 5.90 -52.49 -0.31 1.21 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.11 2.18 6.66 -52.49 -0.35 1.84 16 37 H 0.30 6.19 9.06 -39.29 -0.36 5.84 16 38 H 0.33 7.28 7.34 -39.29 -0.29 6.99 16 39 H 0.29 8.79 6.39 -40.82 -0.26 8.53 16 40 H 0.11 2.17 7.08 -52.48 -0.37 1.80 16 LS Contribution 310.60 15.07 4.68 4.68 Total: -1.00 -30.19 310.60 -8.12 -38.31 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -6.12 Total: 12.61 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: -2.29 Total: -30.54 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.70 Total: -45.58 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.19 -8.12 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309339724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.830 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds