Wall clock time and date at job start Mon Mar 30 2020 05:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47254 * 2 1 4 4 C 1.52997 * 109.47076 * 59.99720 * 3 2 1 5 5 C 1.53002 * 109.46860 * 299.99755 * 3 2 1 6 6 C 1.50700 * 109.46982 * 179.97438 * 3 2 1 7 7 C 1.38251 * 119.99913 * 0.02562 * 6 3 2 8 8 C 1.38223 * 119.99605 * 180.02562 * 7 6 3 9 9 C 1.38251 * 120.00156 * 359.97438 * 8 7 6 10 10 C 1.38216 * 120.00055 * 359.96475 * 9 8 7 11 11 C 1.50693 * 119.99851 * 180.02562 * 10 9 8 12 12 H 1.09010 * 109.46918 * 199.99533 * 11 10 9 13 13 N 1.46898 * 109.47183 * 319.99295 * 11 10 9 14 14 C 1.50696 * 109.47459 * 79.99768 * 11 10 9 15 15 H 1.07995 * 120.00332 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99983 * 180.02562 * 14 11 10 17 17 N 1.31517 * 120.00210 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00019 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.38213 * 119.99624 * 180.20702 * 6 3 2 23 23 H 1.08999 * 109.47240 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46812 * 300.00388 * 1 2 3 25 25 H 1.09002 * 109.46781 * 59.99980 * 1 2 3 26 26 H 1.08993 * 109.47106 * 239.99581 * 2 1 3 27 27 H 1.09002 * 109.47012 * 119.99520 * 2 1 3 28 28 H 1.08996 * 109.47168 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47707 * 300.00159 * 4 3 2 30 30 H 1.09002 * 109.47364 * 60.00374 * 4 3 2 31 31 H 1.08993 * 109.47119 * 300.00186 * 5 3 2 32 32 H 1.09001 * 109.46782 * 59.99992 * 5 3 2 33 33 H 1.08996 * 109.46906 * 179.97438 * 5 3 2 34 34 H 1.07996 * 120.00651 * 359.97438 * 7 6 3 35 35 H 1.08000 * 119.99892 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.00348 * 179.97438 * 9 8 7 37 37 H 1.00899 * 111.00188 * 296.04594 * 13 11 10 38 38 H 1.00896 * 111.00080 * 60.00784 * 13 11 10 39 39 H 0.97000 * 119.99462 * 359.97438 * 17 16 14 40 40 H 1.08004 * 120.00591 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5301 2.1637 -1.2493 6 6 3.5471 1.4424 0.0006 7 6 4.2383 0.2451 0.0006 8 6 5.6205 0.2451 0.0017 9 6 6.3118 1.4424 0.0023 10 6 5.6207 2.6394 0.0011 11 6 6.3743 3.9444 0.0013 12 1 5.7192 4.7422 0.3517 13 7 7.5370 3.8384 0.8928 14 6 6.8405 4.2555 -1.3976 15 1 6.6143 3.5759 -2.2059 16 6 7.5570 5.4071 -1.6454 17 7 7.8330 6.2345 -0.6610 18 14 8.1356 5.7924 -3.3792 19 1 9.4824 5.2047 -3.5936 20 1 7.1816 5.2141 -4.3595 21 1 8.2028 7.2644 -3.5631 22 6 4.2381 2.6394 0.0051 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.8930 3.1915 1.2490 29 1 0.4401 2.1638 1.2492 30 1 1.8934 1.6500 2.1392 31 1 1.8934 1.6498 -2.1392 32 1 0.4401 2.1637 -1.2493 33 1 1.8931 3.1915 -1.2491 34 1 3.6983 -0.6902 0.0005 35 1 6.1605 -0.6902 0.0021 36 1 7.3918 1.4424 0.0036 37 1 7.2478 3.6942 1.8486 38 1 8.1600 3.1053 0.5889 39 1 7.5322 6.0346 0.2392 40 1 3.6982 3.5748 0.0085 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309339724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:40 Heat of formation + Delta-G solvation = -18.901324 kcal Electronic energy + Delta-G solvation = -18215.004606 eV Core-core repulsion = 15606.619547 eV Total energy + Delta-G solvation = -2608.385059 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98096 -38.40414 -36.29495 -33.46256 -32.31703 -30.91682 -29.99893 -28.19548 -27.61265 -25.51493 -24.59685 -22.62917 -22.08222 -19.55685 -18.68781 -17.86875 -16.65063 -16.18612 -15.96546 -15.62197 -15.59649 -15.19166 -14.99661 -14.45458 -14.35958 -13.98769 -13.85115 -13.25007 -13.12855 -12.91461 -12.73820 -12.71638 -12.55747 -12.28131 -12.08737 -12.02109 -11.90041 -11.49161 -11.38684 -11.18755 -10.86537 -10.50881 -9.60954 -9.55291 -9.20902 -8.41157 -6.27319 0.52443 0.58372 1.52951 1.61630 1.79063 2.60263 2.93256 3.28921 3.65585 3.77917 4.06035 4.10915 4.17171 4.22826 4.27624 4.35758 4.51083 4.53758 4.61353 4.74249 4.77484 4.78564 4.88209 4.99068 5.04072 5.10042 5.15528 5.16802 5.21531 5.27785 5.30148 5.48894 5.51644 5.65152 5.77674 5.85696 5.91457 6.17799 6.23063 6.65188 6.74492 7.01131 7.63932 8.94642 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.028467 B = 0.005754 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.346403 B = 4864.781553 C = 5144.399239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.022 4.022 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.069 4.069 7 C -0.140 4.140 8 C -0.116 4.116 9 C -0.142 4.142 10 C -0.092 4.092 11 C 0.241 3.759 12 H 0.001 0.999 13 N -0.835 5.835 14 C -0.614 4.614 15 H 0.032 0.968 16 C -0.011 4.011 17 N -0.918 5.918 18 Si 1.112 2.888 19 H -0.276 1.276 20 H -0.279 1.279 21 H -0.283 1.283 22 C -0.132 4.132 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.109 0.891 37 H 0.316 0.684 38 H 0.330 0.670 39 H 0.278 0.722 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.392 -14.110 2.060 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.022 4.022 4 C -0.194 4.194 5 C -0.196 4.196 6 C -0.069 4.069 7 C -0.158 4.158 8 C -0.134 4.134 9 C -0.160 4.160 10 C -0.094 4.094 11 C 0.132 3.868 12 H 0.018 0.982 13 N -0.363 5.363 14 C -0.652 4.652 15 H 0.050 0.950 16 C -0.215 4.215 17 N -0.554 5.554 18 Si 0.935 3.065 19 H -0.201 1.201 20 H -0.205 1.205 21 H -0.208 1.208 22 C -0.151 4.151 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.168 0.832 35 H 0.161 0.839 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.400 -12.232 0.961 17.444 hybrid contribution -0.708 -1.532 1.190 2.065 sum -13.108 -13.764 2.151 19.128 Atomic orbital electron populations 1.21899 0.94481 1.02291 1.02387 1.21618 0.96942 0.93925 1.02225 1.19535 0.88966 0.97412 0.96295 1.21910 1.01878 0.99289 0.96310 1.21926 1.01868 0.99295 0.96490 1.20065 0.96071 0.92396 0.98329 1.21338 0.93856 0.98241 1.02344 1.21366 0.94949 0.97595 0.99515 1.20965 0.99609 0.92523 1.02922 1.21147 0.94859 0.97244 0.96164 1.18007 0.87510 0.88569 0.92704 0.98154 1.59224 1.19322 1.53622 1.04166 1.21962 1.40899 1.09646 0.92739 0.94980 1.27001 0.93931 0.92698 1.07832 1.70643 1.43511 1.38217 1.03005 0.83006 0.76523 0.76152 0.70791 1.20132 1.20453 1.20812 1.20851 0.93356 0.97900 1.03009 0.91770 0.92007 0.92250 0.91682 0.91298 0.94193 0.90079 0.92696 0.93220 0.89967 0.94340 0.83244 0.83904 0.87330 0.87260 0.85618 0.91098 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.21 71.98 0.66 -1.58 16 2 C -0.11 -2.03 3.65 30.60 0.11 -1.92 16 3 C -0.02 -0.53 0.63 -52.93 -0.03 -0.57 16 4 C -0.14 -3.12 7.93 71.98 0.57 -2.55 16 5 C -0.14 -3.40 7.94 71.98 0.57 -2.83 16 6 C -0.07 -2.16 4.76 -19.87 -0.09 -2.26 16 7 C -0.14 -4.03 8.98 22.27 0.20 -3.83 16 8 C -0.12 -3.64 10.05 22.27 0.22 -3.41 16 9 C -0.14 -5.51 9.29 22.27 0.21 -5.30 16 10 C -0.09 -4.06 4.88 -19.87 -0.10 -4.16 16 11 C 0.24 12.58 2.47 43.42 0.11 12.69 16 12 H 0.00 0.04 7.87 -2.38 -0.02 0.02 16 13 N -0.83 -40.13 7.62 -174.96 -1.33 -41.46 16 14 C -0.61 -35.68 8.70 25.60 0.22 -35.46 16 15 H 0.03 1.90 7.74 -2.91 -0.02 1.88 16 16 C -0.01 -0.65 5.39 84.65 0.46 -0.20 16 17 N -0.92 -57.35 13.50 21.45 0.29 -57.06 16 18 Si 1.11 52.12 29.90 68.60 2.05 54.17 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 C -0.13 -5.26 8.34 22.27 0.19 -5.08 16 23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.06 0.85 6.43 -2.38 -0.02 0.83 16 25 H 0.06 0.85 6.43 -2.39 -0.02 0.84 16 26 H 0.06 1.21 7.51 -2.39 -0.02 1.19 16 27 H 0.07 1.21 7.51 -2.39 -0.02 1.20 16 28 H 0.04 1.04 7.38 -2.39 -0.02 1.02 16 29 H 0.08 1.46 6.43 -2.39 -0.02 1.44 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.58 6.43 -2.39 -0.02 1.57 16 33 H 0.04 1.09 7.40 -2.39 -0.02 1.07 16 34 H 0.15 3.27 5.90 -2.91 -0.02 3.25 16 35 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 36 H 0.11 4.22 6.66 -2.91 -0.02 4.20 16 37 H 0.32 13.49 9.06 -89.69 -0.81 12.67 16 38 H 0.33 15.21 7.34 -89.70 -0.66 14.55 16 39 H 0.28 17.56 6.39 -92.71 -0.59 16.97 16 40 H 0.10 4.09 7.08 -2.91 -0.02 4.07 16 Total: -1.00 -66.92 310.60 4.05 -62.87 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -0.26 Total: 37.94 kcal Atomic # 6 Polarization: -59.75 SS G_CDS: 3.29 Total: -56.45 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -1.04 Total: -98.53 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.05 Total: 54.17 kcal Total: -66.92 4.05 -62.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309339724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.972 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds