Wall clock time and date at job start Mon Mar 30 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.46940 * 2 1 4 4 C 1.53004 * 109.47279 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47279 * 179.97438 * 4 3 2 6 6 C 1.50709 * 109.46968 * 180.02562 * 5 4 3 7 7 C 1.38233 * 119.99990 * 90.00044 * 6 5 4 8 8 C 1.38231 * 119.99765 * 180.02562 * 7 6 5 9 9 C 1.38244 * 120.00233 * 359.95136 * 8 7 6 10 10 C 1.50701 * 120.00343 * 180.02562 * 9 8 7 11 11 H 1.09005 * 109.46566 * 19.99931 * 10 9 8 12 12 N 1.46891 * 109.47306 * 140.00028 * 10 9 8 13 13 C 1.50699 * 109.46837 * 260.00141 * 10 9 8 14 14 H 1.08002 * 120.00511 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99783 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99573 * 180.27665 * 15 13 10 17 17 Si 1.86800 * 119.99781 * 359.97438 * 15 13 10 18 18 H 1.48501 * 109.46758 * 89.99934 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99782 * 17 15 13 20 20 H 1.48496 * 109.47474 * 329.99818 * 17 15 13 21 21 C 1.38236 * 119.99764 * 0.27919 * 9 8 7 22 22 C 1.38236 * 119.99655 * 269.97490 * 6 5 4 23 23 H 1.08997 * 109.47660 * 300.00159 * 1 2 3 24 24 H 1.08995 * 109.47438 * 60.00251 * 1 2 3 25 25 H 1.09009 * 109.47048 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47287 * 239.99448 * 2 1 3 27 27 H 1.09004 * 109.46893 * 119.99717 * 2 1 3 28 28 H 1.09002 * 109.47389 * 60.00354 * 3 2 1 29 29 H 1.08997 * 109.47319 * 299.99892 * 3 2 1 30 30 H 1.09007 * 109.46673 * 59.99711 * 4 3 2 31 31 H 1.08997 * 109.47136 * 300.00346 * 4 3 2 32 32 H 1.08993 * 109.47466 * 60.00446 * 5 4 3 33 33 H 1.09004 * 109.47096 * 299.99934 * 5 4 3 34 34 H 1.07996 * 120.00189 * 359.97111 * 7 6 5 35 35 H 1.08001 * 120.00119 * 179.97438 * 8 7 6 36 36 H 1.00903 * 111.00292 * 296.04659 * 12 10 9 37 37 H 1.00898 * 111.00132 * 59.99658 * 12 10 9 38 38 H 0.97004 * 119.99485 * 179.72881 * 16 15 13 39 39 H 1.07994 * 120.00083 * 179.72670 * 21 9 8 40 40 H 1.08001 * 120.00000 * 0.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.5870 2.8850 0.0000 7 6 6.2781 2.8845 -1.1971 8 6 7.6604 2.8840 -1.1971 9 6 8.3517 2.8850 0.0001 10 6 9.8587 2.8850 0.0002 11 1 10.2220 3.2357 -0.9658 12 7 10.3483 3.7761 1.0604 13 6 10.3609 1.4860 0.2481 14 1 9.6591 0.6775 0.3909 15 6 11.7166 1.2378 0.2916 16 7 12.1548 0.0159 0.5026 17 14 12.9304 2.6356 0.0426 18 1 13.2526 3.2510 1.3551 19 1 14.1734 2.1077 -0.5751 20 1 12.3302 3.6593 -0.8501 21 6 7.6604 2.8807 1.1973 22 6 6.2781 2.8861 1.1972 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0278 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9336 0.9285 -0.8892 31 1 3.9329 0.9288 0.8908 32 1 3.7163 3.3994 0.8895 33 1 3.7169 3.3983 -0.8905 34 1 5.7382 2.8836 -2.1324 35 1 8.2005 2.8832 -2.1324 36 1 10.0789 4.7320 0.8824 37 1 10.0247 3.4720 1.9664 38 1 13.1085 -0.1594 0.5292 39 1 8.2004 2.8770 2.1325 40 1 5.7380 2.8865 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309341161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:44 Heat of formation + Delta-G solvation = -11.890994 kcal Electronic energy + Delta-G solvation = -17224.726597 eV Core-core repulsion = 14616.645529 eV Total energy + Delta-G solvation = -2608.081068 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.11787 -36.49096 -34.93956 -32.68782 -31.66998 -30.40763 -29.35078 -26.76865 -25.55945 -22.87085 -22.15957 -21.23976 -21.02953 -19.59502 -16.86454 -15.92916 -15.83110 -15.06224 -14.82879 -14.39120 -14.00648 -13.90408 -13.62167 -13.57283 -13.00408 -12.82463 -12.33649 -12.31238 -12.06518 -11.87589 -11.60367 -11.34157 -11.01821 -10.99984 -10.73290 -10.67322 -10.61385 -10.37704 -10.06321 -9.76666 -9.27312 -8.53255 -8.38543 -7.89349 -7.61422 -6.00417 -4.10688 1.93499 1.94679 3.57306 3.61311 3.74560 4.29097 4.65495 4.66768 4.76486 4.90453 5.05822 5.17158 5.25417 5.33476 5.36810 5.48181 5.54977 5.57419 5.64680 5.75838 5.80451 5.84241 5.85165 5.89971 5.93316 6.07714 6.12138 6.12684 6.28601 6.33427 6.50398 6.61717 6.84360 7.01279 7.05561 7.33978 7.55401 7.65260 8.15495 8.32261 8.69083 9.00112 9.62584 11.09022 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.039420 B = 0.004014 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.135016 B = 6974.468028 C = 7294.314991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.115 4.115 5 C -0.072 4.072 6 C -0.109 4.109 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.068 4.068 10 C 0.214 3.786 11 H 0.049 0.951 12 N -0.840 5.840 13 C -0.516 4.516 14 H 0.071 0.929 15 C 0.081 3.919 16 N -0.900 5.900 17 Si 0.938 3.062 18 H -0.280 1.280 19 H -0.319 1.319 20 H -0.274 1.274 21 C -0.116 4.116 22 C -0.119 4.119 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.311 0.689 37 H 0.334 0.666 38 H 0.264 0.736 39 H 0.117 0.883 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.956 5.471 -0.896 19.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.157 4.157 4 C -0.153 4.153 5 C -0.110 4.110 6 C -0.109 4.109 7 C -0.138 4.138 8 C -0.137 4.137 9 C -0.070 4.070 10 C 0.105 3.895 11 H 0.067 0.933 12 N -0.370 5.370 13 C -0.554 4.554 14 H 0.089 0.911 15 C -0.123 4.123 16 N -0.537 5.537 17 Si 0.770 3.230 18 H -0.207 1.207 19 H -0.249 1.249 20 H -0.200 1.200 21 C -0.135 4.135 22 C -0.137 4.137 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.122 0.878 37 H 0.148 0.852 38 H 0.073 0.927 39 H 0.135 0.865 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.073 5.125 -1.095 18.817 hybrid contribution -0.313 0.662 0.125 0.743 sum -18.386 5.787 -0.970 19.299 Atomic orbital electron populations 1.21780 0.96133 1.01432 1.01624 1.21548 0.95561 0.97166 1.02187 1.21638 0.95674 0.96576 1.01783 1.21605 0.94544 0.96496 1.02634 1.20501 0.91616 0.96864 1.01984 1.19653 0.94851 1.02997 0.93361 1.20895 0.94256 1.01731 0.96880 1.21058 0.93649 1.00885 0.98132 1.21211 0.99343 0.94031 0.92428 1.18725 0.84363 0.94185 0.92264 0.93339 1.59375 1.66676 1.04518 1.06419 1.20762 0.92643 0.90728 1.51307 0.91123 1.25040 0.98736 0.95804 0.92759 1.69964 1.14656 1.20320 1.48755 0.85841 0.77459 0.81163 0.78501 1.20650 1.24883 1.19998 1.20932 0.93553 1.00807 0.98170 1.20887 0.94239 1.01727 0.96882 0.92873 0.92885 0.92923 0.92010 0.92002 0.92185 0.92182 0.91835 0.91822 0.91692 0.91690 0.87119 0.86528 0.87816 0.85179 0.92715 0.86537 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.13 -1.10 5.93 -26.73 -0.16 -1.26 16 3 C -0.12 -1.08 5.21 -26.73 -0.14 -1.22 16 4 C -0.12 -1.28 5.20 -26.73 -0.14 -1.41 16 5 C -0.07 -0.84 5.35 -27.88 -0.15 -0.99 16 6 C -0.11 -1.64 5.13 -104.62 -0.54 -2.18 16 7 C -0.12 -1.92 9.70 -39.59 -0.38 -2.30 16 8 C -0.12 -2.20 9.67 -39.58 -0.38 -2.59 16 9 C -0.07 -1.39 4.88 -104.62 -0.51 -1.90 16 10 C 0.21 4.96 2.34 -70.02 -0.16 4.80 16 11 H 0.05 1.17 7.06 -51.93 -0.37 0.81 16 12 N -0.84 -17.66 6.60 -6.65 -0.04 -17.70 16 13 C -0.52 -14.55 9.28 -34.44 -0.32 -14.87 16 14 H 0.07 2.20 7.98 -52.49 -0.42 1.78 16 15 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 16 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 17 Si 0.94 24.01 26.03 -169.99 -4.43 19.59 16 18 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 19 H -0.32 -8.26 7.11 56.52 0.40 -7.85 16 20 H -0.27 -6.82 6.54 56.52 0.37 -6.45 16 21 C -0.12 -2.16 9.29 -39.58 -0.37 -2.52 16 22 C -0.12 -1.92 9.70 -39.58 -0.38 -2.31 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.06 0.69 8.09 -51.93 -0.42 0.28 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.12 2.07 8.04 -52.49 -0.42 1.65 16 36 H 0.31 5.64 9.06 -39.29 -0.36 5.28 16 37 H 0.33 6.72 7.35 -39.29 -0.29 6.43 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 39 H 0.12 2.10 6.67 -52.49 -0.35 1.75 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 324.45 15.07 4.89 4.89 Total: -1.00 -30.89 324.45 -9.03 -39.92 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.86 Total: 7.69 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: -3.37 Total: -27.26 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.73 Total: -44.83 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -4.43 Total: 19.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.89 -9.03 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309341161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.032 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds