Wall clock time and date at job start Mon Mar 30 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.46940 * 2 1 4 4 C 1.53004 * 109.47279 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47279 * 179.97438 * 4 3 2 6 6 C 1.50709 * 109.46968 * 180.02562 * 5 4 3 7 7 C 1.38233 * 119.99990 * 90.00044 * 6 5 4 8 8 C 1.38231 * 119.99765 * 180.02562 * 7 6 5 9 9 C 1.38244 * 120.00233 * 359.95136 * 8 7 6 10 10 C 1.50701 * 120.00343 * 180.02562 * 9 8 7 11 11 H 1.09005 * 109.46566 * 19.99931 * 10 9 8 12 12 N 1.46891 * 109.47306 * 140.00028 * 10 9 8 13 13 C 1.50699 * 109.46837 * 260.00141 * 10 9 8 14 14 H 1.08002 * 120.00511 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99783 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99573 * 180.27665 * 15 13 10 17 17 Si 1.86800 * 119.99781 * 359.97438 * 15 13 10 18 18 H 1.48501 * 109.46758 * 89.99934 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99782 * 17 15 13 20 20 H 1.48496 * 109.47474 * 329.99818 * 17 15 13 21 21 C 1.38236 * 119.99764 * 0.27919 * 9 8 7 22 22 C 1.38236 * 119.99655 * 269.97490 * 6 5 4 23 23 H 1.08997 * 109.47660 * 300.00159 * 1 2 3 24 24 H 1.08995 * 109.47438 * 60.00251 * 1 2 3 25 25 H 1.09009 * 109.47048 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47287 * 239.99448 * 2 1 3 27 27 H 1.09004 * 109.46893 * 119.99717 * 2 1 3 28 28 H 1.09002 * 109.47389 * 60.00354 * 3 2 1 29 29 H 1.08997 * 109.47319 * 299.99892 * 3 2 1 30 30 H 1.09007 * 109.46673 * 59.99711 * 4 3 2 31 31 H 1.08997 * 109.47136 * 300.00346 * 4 3 2 32 32 H 1.08993 * 109.47466 * 60.00446 * 5 4 3 33 33 H 1.09004 * 109.47096 * 299.99934 * 5 4 3 34 34 H 1.07996 * 120.00189 * 359.97111 * 7 6 5 35 35 H 1.08001 * 120.00119 * 179.97438 * 8 7 6 36 36 H 1.00903 * 111.00292 * 296.04659 * 12 10 9 37 37 H 1.00898 * 111.00132 * 59.99658 * 12 10 9 38 38 H 0.97004 * 119.99485 * 179.72881 * 16 15 13 39 39 H 1.07994 * 120.00083 * 179.72670 * 21 9 8 40 40 H 1.08001 * 120.00000 * 0.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.5870 2.8850 0.0000 7 6 6.2781 2.8845 -1.1971 8 6 7.6604 2.8840 -1.1971 9 6 8.3517 2.8850 0.0001 10 6 9.8587 2.8850 0.0002 11 1 10.2220 3.2357 -0.9658 12 7 10.3483 3.7761 1.0604 13 6 10.3609 1.4860 0.2481 14 1 9.6591 0.6775 0.3909 15 6 11.7166 1.2378 0.2916 16 7 12.1548 0.0159 0.5026 17 14 12.9304 2.6356 0.0426 18 1 13.2526 3.2510 1.3551 19 1 14.1734 2.1077 -0.5751 20 1 12.3302 3.6593 -0.8501 21 6 7.6604 2.8807 1.1973 22 6 6.2781 2.8861 1.1972 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0278 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9336 0.9285 -0.8892 31 1 3.9329 0.9288 0.8908 32 1 3.7163 3.3994 0.8895 33 1 3.7169 3.3983 -0.8905 34 1 5.7382 2.8836 -2.1324 35 1 8.2005 2.8832 -2.1324 36 1 10.0789 4.7320 0.8824 37 1 10.0247 3.4720 1.9664 38 1 13.1085 -0.1594 0.5292 39 1 8.2004 2.8770 2.1325 40 1 5.7380 2.8865 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309341161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:43 Heat of formation + Delta-G solvation = -29.805311 kcal Electronic energy + Delta-G solvation = -17225.503420 eV Core-core repulsion = 14616.645529 eV Total energy + Delta-G solvation = -2608.857891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47121 -37.55031 -36.33578 -34.23624 -33.32819 -31.75029 -30.51083 -28.47417 -26.88694 -24.19168 -23.46312 -22.45968 -21.81808 -21.06151 -18.98739 -17.29467 -16.92840 -16.62050 -16.21076 -15.85030 -15.63163 -14.93429 -14.63471 -14.59615 -14.38460 -14.12043 -14.10027 -13.56264 -13.48434 -12.92440 -12.78403 -12.69738 -12.40549 -12.18938 -11.95720 -11.80099 -11.70175 -11.60900 -11.42065 -11.32890 -11.27575 -10.77185 -9.74155 -9.47897 -9.16083 -8.26404 -6.39754 0.56735 0.58837 1.49425 1.56379 1.70241 2.51333 2.93260 3.08985 3.81320 3.95551 4.08842 4.10631 4.19337 4.23122 4.24402 4.33790 4.35869 4.61992 4.63336 4.70201 4.76955 4.85973 4.93109 4.98393 5.01466 5.09704 5.13256 5.21958 5.29733 5.30767 5.39165 5.46167 5.52422 5.54827 5.61956 5.78918 5.90021 6.11180 6.23842 6.46492 6.74150 6.97498 7.37002 8.86972 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.039420 B = 0.004014 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.135016 B = 6974.468028 C = 7294.314991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.113 4.113 4 C -0.113 4.113 5 C -0.068 4.068 6 C -0.099 4.099 7 C -0.119 4.119 8 C -0.135 4.135 9 C -0.099 4.099 10 C 0.223 3.777 11 H 0.040 0.960 12 N -0.842 5.842 13 C -0.514 4.514 14 H 0.025 0.975 15 C 0.025 3.975 16 N -0.949 5.949 17 Si 1.004 2.996 18 H -0.275 1.275 19 H -0.323 1.323 20 H -0.261 1.261 21 C -0.128 4.128 22 C -0.121 4.121 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.116 0.884 36 H 0.332 0.668 37 H 0.340 0.660 38 H 0.265 0.735 39 H 0.114 0.886 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.098 7.405 -1.049 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.150 4.150 4 C -0.150 4.150 5 C -0.105 4.105 6 C -0.099 4.099 7 C -0.137 4.137 8 C -0.153 4.153 9 C -0.101 4.101 10 C 0.113 3.887 11 H 0.058 0.942 12 N -0.373 5.373 13 C -0.553 4.553 14 H 0.044 0.956 15 C -0.174 4.174 16 N -0.589 5.589 17 Si 0.833 3.167 18 H -0.201 1.201 19 H -0.253 1.253 20 H -0.186 1.186 21 C -0.147 4.147 22 C -0.139 4.139 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.156 0.844 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.240 7.080 -1.247 21.479 hybrid contribution 0.198 0.009 0.181 0.269 sum -20.042 7.089 -1.066 21.286 Atomic orbital electron populations 1.21765 0.95076 1.01849 1.02116 1.21564 0.96522 0.96997 1.01666 1.21585 0.93949 0.96852 1.02639 1.21563 0.96076 0.95845 1.01559 1.20561 0.88801 0.97475 1.03688 1.20107 0.96941 1.00325 0.92556 1.21204 0.93281 1.00616 0.98622 1.21201 0.95082 1.01499 0.97537 1.20983 0.97763 0.97387 0.94014 1.18349 0.86593 0.91551 0.92166 0.94228 1.59069 1.66721 1.05462 1.06082 1.20991 0.91845 0.92408 1.50008 0.95647 1.25899 1.00723 0.97948 0.92786 1.70094 1.15085 1.22540 1.51136 0.84795 0.74891 0.78299 0.78681 1.20123 1.25347 1.18551 1.21011 0.94864 1.01395 0.97407 1.21193 0.93324 1.00770 0.98602 0.92396 0.92359 0.92630 0.92545 0.92622 0.91335 0.91248 0.92896 0.93027 0.90068 0.89961 0.84372 0.86569 0.85457 0.84601 0.92634 0.86833 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.21 16 2 C -0.13 -2.02 5.93 30.59 0.18 -1.84 16 3 C -0.11 -1.72 5.21 30.59 0.16 -1.56 16 4 C -0.11 -2.22 5.20 30.59 0.16 -2.06 16 5 C -0.07 -1.34 5.35 29.85 0.16 -1.18 16 6 C -0.10 -2.74 5.13 -19.86 -0.10 -2.84 16 7 C -0.12 -3.58 9.70 22.27 0.22 -3.36 16 8 C -0.13 -4.93 9.67 22.27 0.22 -4.72 16 9 C -0.10 -4.05 4.88 -19.86 -0.10 -4.15 16 10 C 0.22 10.42 2.34 43.42 0.10 10.52 16 11 H 0.04 1.91 7.06 -2.38 -0.02 1.89 16 12 N -0.84 -34.57 6.60 -174.96 -1.15 -35.73 16 13 C -0.51 -29.88 9.28 25.60 0.24 -29.65 16 14 H 0.03 1.66 7.98 -2.91 -0.02 1.64 16 15 C 0.03 1.50 5.47 84.66 0.46 1.97 16 16 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 17 Si 1.00 49.96 26.03 68.60 1.79 51.75 16 18 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.32 -16.19 7.11 99.48 0.71 -15.48 16 20 H -0.26 -12.27 6.54 99.48 0.65 -11.62 16 21 C -0.13 -4.70 9.29 22.27 0.21 -4.49 16 22 C -0.12 -3.66 9.70 22.27 0.22 -3.45 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 33 H 0.08 1.40 8.09 -2.38 -0.02 1.38 16 34 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.12 4.13 8.04 -2.91 -0.02 4.11 16 36 H 0.33 11.47 9.06 -89.69 -0.81 10.66 16 37 H 0.34 13.45 7.35 -89.70 -0.66 12.80 16 38 H 0.27 15.95 8.31 -92.71 -0.77 15.17 16 39 H 0.11 4.10 6.67 -2.91 -0.02 4.08 16 40 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -67.85 324.45 3.24 -64.61 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -0.52 Total: 27.85 kcal Atomic # 6 Polarization: -50.85 SS G_CDS: 2.83 Total: -48.02 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -0.85 Total: -96.18 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 1.79 Total: 51.75 kcal Total: -67.85 3.24 -64.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309341161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.800 kcal (2) G-P(sol) polarization free energy of solvation -67.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds