Wall clock time and date at job start Mon Mar 30 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47209 * 2 1 4 4 C 1.52994 * 109.47204 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47040 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47067 * 180.02562 * 5 4 3 7 7 C 1.38236 * 120.00290 * 89.99878 * 6 5 4 8 8 C 1.38238 * 119.99971 * 180.02562 * 7 6 5 9 9 C 1.38231 * 119.99777 * 359.95119 * 8 7 6 10 10 C 1.50707 * 119.99912 * 180.02562 * 9 8 7 11 11 H 1.09005 * 109.46877 * 339.99749 * 10 9 8 12 12 N 1.46900 * 109.47130 * 220.00085 * 10 9 8 13 13 C 1.50696 * 109.47007 * 99.99472 * 10 9 8 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.38238 * 120.00382 * 0.27723 * 9 8 7 22 22 C 1.38233 * 119.99654 * 359.51368 * 21 9 8 23 23 H 1.08989 * 109.47460 * 59.99939 * 1 2 3 24 24 H 1.09002 * 109.46738 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47108 * 299.99684 * 1 2 3 26 26 H 1.08998 * 109.46600 * 240.00230 * 2 1 3 27 27 H 1.09002 * 109.47339 * 120.00390 * 2 1 3 28 28 H 1.09001 * 109.46828 * 60.00145 * 3 2 1 29 29 H 1.09005 * 109.46956 * 300.00828 * 3 2 1 30 30 H 1.09001 * 109.47438 * 60.00117 * 4 3 2 31 31 H 1.08998 * 109.46973 * 299.99672 * 4 3 2 32 32 H 1.09001 * 109.47287 * 59.99562 * 5 4 3 33 33 H 1.09002 * 109.46994 * 299.99737 * 5 4 3 34 34 H 1.08002 * 119.99753 * 359.97069 * 7 6 5 35 35 H 1.07997 * 119.99624 * 179.97438 * 8 7 6 36 36 H 1.00902 * 110.99636 * 176.04372 * 12 10 9 37 37 H 1.00899 * 110.99700 * 299.99445 * 12 10 9 38 38 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 39 39 H 1.07999 * 119.99806 * 179.72939 * 21 9 8 40 40 H 1.08002 * 120.00033 * 180.25266 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.5870 2.8850 -0.0013 7 6 6.2772 2.8859 -1.1990 8 6 7.6596 2.8854 -1.2001 9 6 8.3516 2.8850 -0.0035 10 6 9.8587 2.8850 -0.0046 11 1 10.2213 2.5337 -0.9707 12 7 10.3492 1.9944 1.0557 13 6 10.3612 4.2841 0.2420 14 1 9.6595 5.0924 0.3857 15 6 11.7169 4.5323 0.2843 16 7 12.1554 5.7533 0.5000 17 14 12.9304 3.1343 0.0350 18 1 13.2539 2.5196 1.3476 19 1 12.3294 2.1101 -0.8566 20 1 14.1729 3.6619 -0.5841 21 6 7.6614 2.8793 1.1943 22 6 6.2791 2.8842 1.1954 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9330 0.9288 -0.8909 31 1 3.9337 0.9286 0.8891 32 1 3.7170 3.3984 0.8904 33 1 3.7163 3.3993 -0.8896 34 1 5.7364 2.8861 -2.1338 35 1 8.1988 2.8856 -2.1358 36 1 11.3557 1.9269 1.0343 37 1 10.0264 2.2990 1.9618 38 1 13.1091 5.9277 0.5301 39 1 8.2022 2.8746 2.1291 40 1 5.7398 2.8839 2.1311 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309341162.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:46 Heat of formation + Delta-G solvation = -7.898036 kcal Electronic energy + Delta-G solvation = -17196.451805 eV Core-core repulsion = 14588.543885 eV Total energy + Delta-G solvation = -2607.907921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.00307 -36.46410 -35.02351 -32.79512 -31.69429 -30.30395 -29.43040 -26.70759 -25.49257 -22.93581 -22.07468 -21.30546 -21.03596 -19.55523 -17.05015 -16.06110 -15.88482 -15.13745 -14.70435 -14.43391 -14.10503 -13.85116 -13.59302 -13.51973 -12.91679 -12.71380 -12.48041 -12.25603 -12.02006 -11.79645 -11.68355 -11.41944 -11.06127 -10.99325 -10.85528 -10.62263 -10.58784 -10.45856 -10.22109 -10.00063 -9.50578 -8.78749 -8.26755 -7.96231 -7.41104 -6.23672 -4.26997 2.05377 2.07209 3.12617 3.27035 3.27841 4.22635 4.40552 4.68507 4.76558 4.91331 5.06258 5.09357 5.21805 5.37797 5.38260 5.56440 5.58888 5.60302 5.65724 5.70707 5.82640 5.87398 5.88135 5.91469 6.03486 6.09152 6.17539 6.23678 6.35092 6.36950 6.55946 6.68767 6.90627 7.12289 7.16165 7.39277 7.56997 7.69661 8.07670 8.28561 8.49393 8.84234 9.35489 10.89001 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.054394 B = 0.003770 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.634872 B = 7424.845840 C = 7551.084278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.114 4.114 5 C -0.073 4.073 6 C -0.110 4.110 7 C -0.120 4.120 8 C -0.122 4.122 9 C -0.021 4.021 10 C 0.205 3.795 11 H 0.049 0.951 12 N -0.848 5.848 13 C -0.544 4.544 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.890 5.890 17 Si 0.874 3.126 18 H -0.275 1.275 19 H -0.259 1.259 20 H -0.291 1.291 21 C -0.105 4.105 22 C -0.121 4.121 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.316 0.684 37 H 0.331 0.669 38 H 0.266 0.734 39 H 0.117 0.883 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.383 -9.080 -0.725 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.151 4.151 5 C -0.110 4.110 6 C -0.110 4.110 7 C -0.138 4.138 8 C -0.140 4.140 9 C -0.021 4.021 10 C 0.096 3.904 11 H 0.066 0.934 12 N -0.382 5.382 13 C -0.584 4.584 14 H 0.094 0.906 15 C -0.132 4.132 16 N -0.527 5.527 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.184 1.184 20 H -0.218 1.218 21 C -0.124 4.124 22 C -0.139 4.139 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.143 0.857 38 H 0.076 0.924 39 H 0.135 0.865 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.629 -9.535 -1.094 20.073 hybrid contribution 1.388 0.400 0.256 1.467 sum -16.241 -9.135 -0.839 18.653 Atomic orbital electron populations 1.21783 0.96151 1.01382 1.01692 1.21546 0.95560 0.97230 1.02048 1.21648 0.95768 0.96485 1.01883 1.21594 0.94472 0.96645 1.02409 1.20499 0.91744 0.96676 1.02088 1.19616 0.94741 1.03295 0.93380 1.20826 0.94079 1.02023 0.96844 1.20972 0.93702 1.01410 0.97938 1.19997 0.96368 0.93370 0.92399 1.18516 0.87810 0.91641 0.92459 0.93363 1.59739 1.14097 1.56058 1.08282 1.21646 0.92784 0.93773 1.50176 0.90584 1.25049 0.98301 0.95615 0.94192 1.69901 1.14712 1.19608 1.48513 0.86995 0.81037 0.82644 0.79080 1.20146 1.18365 1.21756 1.20882 0.93319 0.99970 0.98191 1.20881 0.94245 1.01907 0.96837 0.92857 0.92977 0.92842 0.92090 0.92071 0.92130 0.92150 0.91946 0.91918 0.91647 0.91680 0.87160 0.86651 0.86778 0.85686 0.92386 0.86517 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -1.04 5.93 -26.73 -0.16 -1.20 16 3 C -0.12 -1.07 5.21 -26.74 -0.14 -1.21 16 4 C -0.11 -1.22 5.20 -26.73 -0.14 -1.35 16 5 C -0.07 -0.88 5.34 -27.88 -0.15 -1.03 16 6 C -0.11 -1.72 5.13 -104.62 -0.54 -2.26 16 7 C -0.12 -1.98 9.70 -39.58 -0.38 -2.37 16 8 C -0.12 -2.35 9.67 -39.58 -0.38 -2.73 16 9 C -0.02 -0.44 4.90 -104.62 -0.51 -0.96 16 10 C 0.20 4.89 2.48 -70.01 -0.17 4.71 16 11 H 0.05 1.19 7.06 -51.93 -0.37 0.82 16 12 N -0.85 -18.84 8.97 -6.65 -0.06 -18.90 16 13 C -0.54 -15.12 9.29 -34.44 -0.32 -15.43 16 14 H 0.08 2.34 7.98 -52.49 -0.42 1.92 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 16 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 17 Si 0.87 20.95 24.61 -169.99 -4.18 16.77 16 18 H -0.27 -6.32 7.01 56.52 0.40 -5.92 16 19 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 C -0.11 -2.05 9.29 -39.58 -0.37 -2.42 16 22 C -0.12 -2.02 9.70 -39.58 -0.38 -2.41 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 33 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.12 2.11 8.04 -52.49 -0.42 1.69 16 36 H 0.32 7.13 4.30 -39.29 -0.17 6.96 16 37 H 0.33 6.95 7.33 -39.29 -0.29 6.66 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.12 2.21 6.65 -52.49 -0.35 1.86 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -29.54 320.68 -8.69 -38.23 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -6.68 Total: 12.48 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: -3.38 Total: -27.43 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.71 Total: -44.88 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.18 Total: 16.77 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.54 -8.69 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309341162.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.336 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds