Wall clock time and date at job start Mon Mar 30 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.52997 * 109.47298 * 59.99877 * 4 2 1 6 6 N 1.46897 * 109.47501 * 179.97438 * 5 4 2 7 7 C 1.46901 * 111.00180 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47185 * 180.02562 * 7 6 5 9 9 H 1.08010 * 119.99718 * 0.02562 * 8 7 6 10 10 C 1.37869 * 120.00291 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99791 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00506 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47156 * 59.99648 * 12 10 8 14 14 H 1.48493 * 109.47627 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46821 * 300.00418 * 12 10 8 16 16 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 17 17 C 1.38237 * 119.99761 * 300.00365 * 16 2 1 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 2 19 19 C 1.38234 * 120.00220 * 359.94731 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00191 * 119.97467 * 16 2 1 22 22 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 23 23 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 24 24 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 27 27 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 28 28 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 29 29 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 30 30 H 1.08998 * 109.47349 * 300.00486 * 5 4 2 31 31 H 1.09007 * 109.46746 * 60.00319 * 5 4 2 32 32 H 1.00906 * 110.99783 * 56.05075 * 6 5 4 33 33 H 1.08997 * 109.47217 * 300.00478 * 7 6 5 34 34 H 1.08993 * 109.46893 * 60.00570 * 7 6 5 35 35 H 0.97006 * 119.99893 * 179.97438 * 11 10 8 36 36 H 1.08005 * 120.00088 * 359.96779 * 17 16 2 37 37 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 38 38 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 39 39 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 40 40 H 1.07999 * 119.99990 * 0.02562 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 0.0000 -2.4985 6 7 2.0201 -0.6921 -3.6979 7 6 1.5485 -0.0263 -4.9195 8 6 2.0696 -0.7632 -6.1264 9 1 2.6889 -1.6389 -5.9986 10 6 1.7560 -0.3197 -7.3935 11 7 1.0024 0.7469 -7.5491 12 14 2.4025 -1.2327 -8.8895 13 1 1.9080 -2.6327 -8.8668 14 1 1.9268 -0.5591 -10.1244 15 1 3.8873 -1.2319 -8.8663 16 6 2.0324 -0.7104 1.2305 17 6 1.6984 -0.2382 2.4860 18 6 2.1588 -0.8902 3.6147 19 6 2.9523 -2.0150 3.4878 20 6 3.2903 -2.4844 2.2323 21 6 2.8267 -1.8346 1.1036 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6768 1.9564 0.8900 28 1 3.1300 -0.7216 -1.2490 29 1 1.6766 -1.7489 -1.2492 30 1 0.4400 0.0001 -2.4984 31 1 1.8934 1.0277 -2.4984 32 1 1.7509 -1.6646 -3.6896 33 1 0.4587 -0.0272 -4.9363 34 1 1.9113 1.0013 -4.9363 35 1 0.7820 1.0592 -8.4406 36 1 1.0778 0.6402 2.5851 37 1 1.8982 -0.5210 4.5956 38 1 3.3117 -2.5245 4.3697 39 1 3.9138 -3.3606 2.1332 40 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309370808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:13 Heat of formation + Delta-G solvation = 3.423594 kcal Electronic energy + Delta-G solvation = -17460.704675 eV Core-core repulsion = 14853.287697 eV Total energy + Delta-G solvation = -2607.416978 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94138 -37.08476 -34.72189 -32.40974 -31.09506 -30.09674 -28.51392 -27.21713 -25.93237 -23.68815 -22.47904 -21.62077 -21.10335 -18.75900 -17.05955 -16.31079 -15.22042 -15.12646 -15.02478 -14.52979 -14.29182 -13.84585 -13.67306 -13.43126 -13.03867 -12.77175 -12.50103 -12.15814 -12.04130 -11.70563 -11.57232 -11.38493 -11.09892 -10.99832 -10.77144 -10.73784 -10.38611 -10.31634 -10.23890 -9.79513 -9.15646 -8.95147 -8.71014 -8.45581 -7.23769 -6.01364 -4.03352 1.33554 1.36549 3.34818 3.38443 3.41747 3.75503 4.43839 4.59840 4.69522 4.93305 5.03805 5.07306 5.08235 5.28606 5.34420 5.40987 5.50455 5.57325 5.63216 5.73472 5.84268 5.92439 5.96313 6.01112 6.03534 6.08398 6.18027 6.25489 6.27987 6.45148 6.49933 6.59227 6.61629 6.70265 6.97852 7.28935 7.45302 7.80744 8.15781 8.43375 8.65466 9.05946 9.61513 11.09779 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.043608 B = 0.003745 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.927386 B = 7474.246691 C = 7912.478807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.025 4.025 3 C -0.139 4.139 4 C -0.106 4.106 5 C 0.056 3.944 6 N -0.692 5.692 7 C 0.194 3.806 8 C -0.515 4.515 9 H 0.062 0.938 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.900 3.100 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.276 1.276 16 C -0.061 4.061 17 C -0.118 4.118 18 C -0.123 4.123 19 C -0.132 4.132 20 C -0.120 4.120 21 C -0.119 4.119 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.065 0.935 32 H 0.326 0.674 33 H -0.015 1.015 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 -2.565 21.249 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.196 4.196 4 C -0.144 4.144 5 C -0.073 4.073 6 N -0.322 5.322 7 C 0.067 3.933 8 C -0.553 4.553 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.727 3.273 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.201 1.201 16 C -0.061 4.061 17 C -0.136 4.136 18 C -0.141 4.141 19 C -0.150 4.150 20 C -0.138 4.138 21 C -0.137 4.137 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.003 0.997 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.374 -2.103 21.091 21.240 hybrid contribution -0.642 -0.666 -0.826 1.240 sum 0.731 -2.769 20.265 20.466 Atomic orbital electron populations 1.21946 0.93837 1.01986 1.01967 1.19518 0.95627 0.95325 0.92107 1.21933 1.01320 0.94499 1.01896 1.21708 1.01314 0.98735 0.92666 1.22022 0.96397 0.98594 0.90335 1.60671 1.63651 1.05667 1.02209 1.19532 0.93023 0.95094 0.85602 1.21173 1.31241 1.12584 0.90334 0.92028 1.24995 0.95244 0.95214 0.99157 1.69959 1.37373 1.23725 1.22785 0.86538 0.79323 0.79717 0.81686 1.20264 1.21348 1.20142 1.19945 0.96613 0.95190 0.94402 1.20991 1.00455 1.00091 0.92033 1.21090 0.98512 0.96159 0.98306 1.21100 0.99350 0.97185 0.97349 1.21170 1.00005 0.99947 0.92650 1.21327 0.97648 0.95519 0.99218 0.92894 0.91550 0.92677 0.92443 0.91523 0.92962 0.91027 0.92158 0.96181 0.91634 0.85752 0.99719 0.95514 0.92877 0.86316 0.86476 0.86548 0.86280 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 7.93 37.16 0.29 -1.35 16 2 C -0.03 -0.31 0.63 -155.66 -0.10 -0.41 16 3 C -0.14 -1.65 7.93 37.16 0.29 -1.36 16 4 C -0.11 -1.52 3.19 -26.73 -0.09 -1.60 16 5 C 0.06 1.00 4.98 -3.83 -0.02 0.98 16 6 N -0.69 -15.10 6.49 -115.06 -0.75 -15.85 16 7 C 0.19 5.20 5.44 -4.98 -0.03 5.18 16 8 C -0.51 -14.85 9.32 -34.44 -0.32 -15.17 16 9 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 12 Si 0.90 21.92 29.54 -169.99 -5.02 16.89 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C -0.06 -0.73 4.76 -104.62 -0.50 -1.23 16 17 C -0.12 -1.27 8.71 -39.58 -0.34 -1.61 16 18 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 19 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 20 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 21 C -0.12 -1.41 8.98 -39.58 -0.36 -1.77 16 22 H 0.05 0.54 7.39 -51.92 -0.38 0.16 16 23 H 0.07 0.83 6.43 -51.93 -0.33 0.49 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.83 6.43 -51.93 -0.33 0.50 16 27 H 0.05 0.54 7.39 -51.93 -0.38 0.15 16 28 H 0.07 1.06 7.51 -51.93 -0.39 0.67 16 29 H 0.06 0.84 7.51 -51.93 -0.39 0.45 16 30 H 0.02 0.36 6.43 -51.93 -0.33 0.02 16 31 H 0.07 1.19 6.43 -51.92 -0.33 0.86 16 32 H 0.33 6.80 8.72 -39.29 -0.34 6.45 16 33 H -0.01 -0.42 8.14 -51.93 -0.42 -0.85 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.12 1.12 7.10 -52.48 -0.37 0.74 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.13 1.51 5.90 -52.49 -0.31 1.20 16 LS Contribution 318.21 15.07 4.80 4.80 Total: -1.00 -30.56 318.21 -9.10 -39.66 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.41 Total: 2.76 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -2.45 Total: -21.79 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.01 Total: -42.32 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.56 -9.10 -39.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309370808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.081 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds