Wall clock time and date at job start Mon Mar 30 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.46820 * 2 1 4 4 C 1.38130 * 120.04077 * 264.97813 * 3 2 1 5 5 C 1.38258 * 120.07862 * 180.02562 * 4 3 2 6 6 C 1.38314 * 120.15140 * 359.97438 * 5 4 3 7 7 C 1.38085 * 120.06889 * 359.74416 * 6 5 4 8 8 C 1.50698 * 120.03585 * 180.27542 * 7 6 5 9 9 C 1.38887 * 120.03898 * 85.00051 * 3 2 1 10 10 N 1.39676 * 120.07413 * 359.95096 * 9 3 2 11 11 C 1.46905 * 110.99852 * 120.00018 * 10 9 3 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47360 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47387 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00144 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99821 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00108 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99834 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46679 * 90.00592 * 18 16 14 20 20 H 1.48496 * 109.47358 * 209.99839 * 18 16 14 21 21 H 1.48495 * 109.47285 * 330.00458 * 18 16 14 22 22 H 1.09007 * 109.47607 * 60.00060 * 1 2 3 23 23 H 1.08999 * 109.47398 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47807 * 300.00128 * 1 2 3 25 25 H 1.08996 * 109.47006 * 240.00328 * 2 1 3 26 26 H 1.08993 * 109.47045 * 119.99921 * 2 1 3 27 27 H 1.08000 * 119.95603 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.92764 * 179.97438 * 5 4 3 29 29 H 1.07992 * 119.96444 * 180.02562 * 6 5 4 30 30 H 1.09004 * 109.46923 * 270.25850 * 8 7 6 31 31 H 1.09000 * 109.47148 * 30.25049 * 8 7 6 32 32 H 1.09002 * 109.47574 * 150.25624 * 8 7 6 33 33 H 1.00901 * 111.00119 * 243.95217 * 10 9 3 34 34 H 1.09001 * 109.46798 * 300.00380 * 11 10 9 35 35 H 1.08998 * 109.46961 * 60.00097 * 11 10 9 36 36 H 1.09001 * 109.47393 * 299.99719 * 12 11 10 37 37 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 38 38 H 1.09001 * 109.46514 * 300.00105 * 13 12 11 39 39 H 1.08998 * 109.46924 * 59.99625 * 13 12 11 40 40 H 0.97004 * 119.99990 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3614 2.0379 -1.1912 5 6 2.8227 3.3412 -1.1920 6 6 2.9559 4.0319 -0.0011 7 6 2.6231 3.4229 1.1928 8 6 2.7626 4.1782 2.4893 9 6 2.1652 2.1113 1.1978 10 7 1.8327 1.4906 2.4041 11 6 2.9930 1.4319 3.3031 12 6 2.5909 0.7465 4.6105 13 6 3.7992 0.6859 5.5473 14 6 3.4030 0.0113 6.8353 15 1 2.3908 -0.3395 6.9720 16 6 4.3331 -0.1589 7.8387 17 7 5.5658 0.2678 7.6721 18 14 3.8417 -0.9944 9.4356 19 1 4.0674 -2.4575 9.3185 20 1 4.6622 -0.4548 10.5495 21 1 2.4052 -0.7354 9.7083 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.2582 1.5016 -2.1229 28 1 3.0798 3.8212 -2.1247 29 1 3.3161 5.0499 -0.0053 30 1 3.7625 4.0229 2.8945 31 1 2.6048 5.2416 2.3092 32 1 2.0215 3.8165 3.2021 33 1 1.0548 1.9555 2.8476 34 1 3.7931 0.8650 2.8272 35 1 3.3404 2.4432 3.5145 36 1 1.7907 1.3130 5.0867 37 1 2.2438 -0.2648 4.3988 38 1 4.5997 0.1195 5.0713 39 1 4.1459 1.6973 5.7589 40 1 6.2200 0.1484 8.3782 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309412619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:48 Heat of formation + Delta-G solvation = 0.139960 kcal Electronic energy + Delta-G solvation = -17634.017097 eV Core-core repulsion = 15026.457730 eV Total energy + Delta-G solvation = -2607.559367 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.01756 -36.14000 -34.41278 -33.56061 -31.68065 -30.73767 -28.50309 -27.23709 -25.63843 -23.63824 -22.55826 -21.08523 -20.34486 -20.05502 -16.77854 -16.31268 -15.99755 -15.21665 -14.81863 -14.42800 -14.13407 -13.91598 -13.57153 -13.35749 -13.18223 -12.70114 -12.38765 -12.21658 -11.95114 -11.80064 -11.47913 -11.42016 -11.18855 -10.90789 -10.71125 -10.70355 -10.56457 -10.46569 -9.69289 -9.38051 -9.07106 -8.53253 -8.41275 -8.33245 -8.28471 -5.98268 -4.00386 1.37485 1.43338 3.33307 3.39379 3.42843 3.74627 4.36885 4.49834 4.82343 4.86135 4.95309 5.25026 5.31998 5.37637 5.42284 5.51855 5.56677 5.63896 5.68895 5.76904 5.81646 5.86979 6.00751 6.03852 6.13651 6.25982 6.34316 6.41868 6.51743 6.57061 6.67118 6.73657 6.79841 7.02138 7.14040 7.42379 7.69766 7.72951 7.84502 8.02053 8.45195 9.06821 9.63648 11.13154 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030743 B = 0.004393 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.558616 B = 6372.959392 C = 6945.550752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.059 4.059 4 C -0.124 4.124 5 C -0.125 4.125 6 C -0.121 4.121 7 C -0.116 4.116 8 C -0.118 4.118 9 C 0.101 3.899 10 N -0.646 5.646 11 C 0.049 3.951 12 C -0.106 4.106 13 C 0.023 3.977 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.346 0.654 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 5.786 -17.062 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 C -0.060 4.060 4 C -0.142 4.142 5 C -0.143 4.143 6 C -0.139 4.139 7 C -0.118 4.118 8 C -0.175 4.175 9 C 0.005 3.995 10 N -0.277 5.277 11 C -0.077 4.077 12 C -0.144 4.144 13 C -0.015 4.015 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.170 0.830 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.241 5.153 -17.170 19.333 hybrid contribution 0.023 0.543 1.148 1.270 sum -7.218 5.696 -16.022 18.473 Atomic orbital electron populations 1.21638 0.95012 1.01277 1.01614 1.20376 0.95954 0.92280 1.02698 1.19847 0.98198 0.96421 0.91520 1.20944 1.00852 0.95155 0.97293 1.21040 1.00623 0.94919 0.97706 1.20874 1.01249 0.99811 0.92003 1.20665 1.00322 0.95094 0.95763 1.20930 1.02947 0.99313 0.94283 1.18576 0.99117 0.90235 0.91582 1.58116 1.09560 1.56156 1.03908 1.22475 0.91534 1.00411 0.93301 1.21628 1.00436 0.99407 0.92925 1.19052 0.92231 0.97004 0.93186 1.21248 0.96511 1.37944 0.99980 0.92682 1.25022 0.94987 0.95790 0.98670 1.69967 1.02966 1.47022 1.33637 0.86604 0.78480 0.79716 0.83261 1.20662 1.21268 1.19885 0.93593 0.92817 0.92155 0.92238 0.89561 0.86289 0.86458 0.86536 0.90315 0.91763 0.91488 0.83030 0.91535 0.93759 0.93634 0.92581 0.96620 0.96811 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.08 -0.92 5.76 -27.88 -0.16 -1.08 16 3 C -0.06 -0.78 5.15 -104.42 -0.54 -1.32 16 4 C -0.12 -1.45 9.67 -39.61 -0.38 -1.83 16 5 C -0.12 -1.40 10.04 -39.55 -0.40 -1.80 16 6 C -0.12 -1.45 9.70 -39.61 -0.38 -1.83 16 7 C -0.12 -1.56 5.75 -104.42 -0.60 -2.16 16 8 C -0.12 -1.48 8.12 36.00 0.29 -1.19 16 9 C 0.10 1.44 5.55 -83.79 -0.47 0.97 16 10 N -0.65 -9.64 5.23 -58.36 -0.31 -9.94 16 11 C 0.05 0.86 5.05 -3.82 -0.02 0.84 16 12 C -0.11 -2.18 5.41 -26.73 -0.14 -2.32 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 26 H 0.09 1.21 7.63 -51.93 -0.40 0.81 16 27 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.08 1.05 7.06 -51.93 -0.37 0.68 16 31 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 32 H 0.07 0.85 6.41 -51.93 -0.33 0.52 16 33 H 0.35 4.83 8.05 -39.29 -0.32 4.51 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.04 0.76 4.35 -51.93 -0.23 0.53 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 324.01 15.07 4.88 4.88 Total: -1.00 -30.13 324.01 -9.36 -39.48 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.67 Total: 1.20 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -2.98 Total: -25.99 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.43 Total: -36.36 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.13 -9.36 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309412619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.624 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds