Wall clock time and date at job start Mon Mar 30 2020 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.46820 * 2 1 4 4 C 1.38130 * 120.04077 * 264.97813 * 3 2 1 5 5 C 1.38258 * 120.07862 * 180.02562 * 4 3 2 6 6 C 1.38314 * 120.15140 * 359.97438 * 5 4 3 7 7 C 1.38085 * 120.06889 * 359.74416 * 6 5 4 8 8 C 1.50698 * 120.03585 * 180.27542 * 7 6 5 9 9 C 1.38887 * 120.03898 * 85.00051 * 3 2 1 10 10 N 1.39676 * 120.07413 * 359.95096 * 9 3 2 11 11 C 1.46905 * 110.99852 * 120.00018 * 10 9 3 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47360 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47387 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00144 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99821 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00108 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99834 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46679 * 90.00592 * 18 16 14 20 20 H 1.48496 * 109.47358 * 209.99839 * 18 16 14 21 21 H 1.48495 * 109.47285 * 330.00458 * 18 16 14 22 22 H 1.09007 * 109.47607 * 60.00060 * 1 2 3 23 23 H 1.08999 * 109.47398 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47807 * 300.00128 * 1 2 3 25 25 H 1.08996 * 109.47006 * 240.00328 * 2 1 3 26 26 H 1.08993 * 109.47045 * 119.99921 * 2 1 3 27 27 H 1.08000 * 119.95603 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.92764 * 179.97438 * 5 4 3 29 29 H 1.07992 * 119.96444 * 180.02562 * 6 5 4 30 30 H 1.09004 * 109.46923 * 270.25850 * 8 7 6 31 31 H 1.09000 * 109.47148 * 30.25049 * 8 7 6 32 32 H 1.09002 * 109.47574 * 150.25624 * 8 7 6 33 33 H 1.00901 * 111.00119 * 243.95217 * 10 9 3 34 34 H 1.09001 * 109.46798 * 300.00380 * 11 10 9 35 35 H 1.08998 * 109.46961 * 60.00097 * 11 10 9 36 36 H 1.09001 * 109.47393 * 299.99719 * 12 11 10 37 37 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 38 38 H 1.09001 * 109.46514 * 300.00105 * 13 12 11 39 39 H 1.08998 * 109.46924 * 59.99625 * 13 12 11 40 40 H 0.97004 * 119.99990 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3614 2.0379 -1.1912 5 6 2.8227 3.3412 -1.1920 6 6 2.9559 4.0319 -0.0011 7 6 2.6231 3.4229 1.1928 8 6 2.7626 4.1782 2.4893 9 6 2.1652 2.1113 1.1978 10 7 1.8327 1.4906 2.4041 11 6 2.9930 1.4319 3.3031 12 6 2.5909 0.7465 4.6105 13 6 3.7992 0.6859 5.5473 14 6 3.4030 0.0113 6.8353 15 1 2.3908 -0.3395 6.9720 16 6 4.3331 -0.1589 7.8387 17 7 5.5658 0.2678 7.6721 18 14 3.8417 -0.9944 9.4356 19 1 4.0674 -2.4575 9.3185 20 1 4.6622 -0.4548 10.5495 21 1 2.4052 -0.7354 9.7083 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.2582 1.5016 -2.1229 28 1 3.0798 3.8212 -2.1247 29 1 3.3161 5.0499 -0.0053 30 1 3.7625 4.0229 2.8945 31 1 2.6048 5.2416 2.3092 32 1 2.0215 3.8165 3.2021 33 1 1.0548 1.9555 2.8476 34 1 3.7931 0.8650 2.8272 35 1 3.3404 2.4432 3.5145 36 1 1.7907 1.3130 5.0867 37 1 2.2438 -0.2648 4.3988 38 1 4.5997 0.1195 5.0713 39 1 4.1459 1.6973 5.7589 40 1 6.2200 0.1484 8.3782 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309412619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:47 Heat of formation + Delta-G solvation = -15.332070 kcal Electronic energy + Delta-G solvation = -17634.688014 eV Core-core repulsion = 15026.457730 eV Total energy + Delta-G solvation = -2608.230285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.02847 -37.45520 -35.48185 -35.34329 -33.36323 -31.91917 -29.73072 -28.45598 -27.20347 -24.74765 -24.18087 -22.15385 -21.89426 -21.19680 -18.49405 -17.88107 -17.05982 -16.51978 -16.25427 -15.96593 -15.55651 -14.91018 -14.62247 -14.52685 -14.33869 -14.12923 -13.66732 -13.61651 -13.44536 -13.05625 -12.84724 -12.69067 -12.50923 -12.42282 -12.34610 -12.04400 -11.79393 -11.63602 -11.48492 -11.39889 -11.13203 -10.55499 -9.55561 -9.46889 -9.38688 -8.20060 -6.31214 0.40525 0.48414 1.40216 1.41661 1.52840 2.41082 2.79122 3.13196 3.20339 3.88073 3.92282 4.09797 4.19975 4.31982 4.39898 4.40466 4.51550 4.61556 4.64433 4.67094 4.72249 4.80676 4.85582 4.91559 5.00653 5.12128 5.19206 5.22215 5.23705 5.33948 5.49863 5.52097 5.60165 5.62234 5.72845 5.76472 5.85486 5.97499 6.18896 6.26981 6.60396 6.85693 7.38174 8.91901 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030743 B = 0.004393 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.558616 B = 6372.959392 C = 6945.550752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 C -0.071 4.071 4 C -0.127 4.127 5 C -0.121 4.121 6 C -0.128 4.128 7 C -0.130 4.130 8 C -0.116 4.116 9 C 0.073 3.927 10 N -0.639 5.639 11 C 0.066 3.934 12 C -0.089 4.089 13 C 0.027 3.973 14 C -0.542 4.542 15 H 0.060 0.940 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.965 3.035 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.262 1.262 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.136 0.864 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.351 0.649 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.051 0.949 38 H -0.013 1.013 39 H -0.008 1.008 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.552 6.036 -18.120 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.112 4.112 3 C -0.072 4.072 4 C -0.145 4.145 5 C -0.139 4.139 6 C -0.146 4.146 7 C -0.132 4.132 8 C -0.173 4.173 9 C -0.022 4.022 10 N -0.271 5.271 11 C -0.061 4.061 12 C -0.127 4.127 13 C -0.011 4.011 14 C -0.580 4.580 15 H 0.078 0.922 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.187 1.187 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.161 0.839 28 H 0.165 0.835 29 H 0.154 0.846 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.175 0.825 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.006 0.994 39 H 0.011 0.989 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.328 5.405 -18.244 20.770 hybrid contribution 0.381 0.504 1.385 1.522 sum -7.947 5.910 -16.859 19.553 Atomic orbital electron populations 1.21591 0.94071 1.01853 1.01494 1.20362 0.96757 0.91800 1.02252 1.20071 0.98477 0.96871 0.91828 1.21260 1.00060 0.95598 0.97577 1.21431 0.99110 0.94687 0.98625 1.21179 1.00840 1.00847 0.91751 1.20808 1.00789 0.94971 0.96674 1.20894 1.01865 1.00564 0.93953 1.18719 1.01123 0.91033 0.91351 1.57963 1.08474 1.56817 1.03808 1.22126 0.92076 0.99786 0.92152 1.21356 0.98179 0.99736 0.93467 1.18944 0.93493 0.94933 0.93689 1.21685 0.96906 1.38297 1.01138 0.92199 1.25982 0.94840 0.96343 1.02634 1.70100 1.04179 1.48144 1.35023 0.85445 0.78632 0.78624 0.78339 1.19826 1.20674 1.18662 0.92440 0.91906 0.93474 0.90640 0.92005 0.83903 0.83496 0.84577 0.91658 0.89741 0.92190 0.82538 0.93266 0.93451 0.92767 0.93022 0.99412 0.98925 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.89 71.98 0.71 -2.02 16 2 C -0.07 -1.74 5.76 29.85 0.17 -1.57 16 3 C -0.07 -1.81 5.15 -19.73 -0.10 -1.92 16 4 C -0.13 -2.65 9.67 22.25 0.22 -2.44 16 5 C -0.12 -2.35 10.04 22.29 0.22 -2.13 16 6 C -0.13 -2.80 9.70 22.25 0.22 -2.58 16 7 C -0.13 -3.39 5.75 -19.73 -0.11 -3.51 16 8 C -0.12 -2.87 8.12 71.24 0.58 -2.29 16 9 C 0.07 2.06 5.55 38.21 0.21 2.28 16 10 N -0.64 -19.29 5.23 -338.55 -1.77 -21.06 16 11 C 0.07 2.37 5.05 86.30 0.44 2.81 16 12 C -0.09 -3.77 5.41 30.59 0.17 -3.60 16 13 C 0.03 1.46 4.97 29.85 0.15 1.61 16 14 C -0.54 -31.45 9.11 25.60 0.23 -31.21 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 18 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 22 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 26 H 0.06 1.75 7.63 -2.39 -0.02 1.73 16 27 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 28 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 29 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 30 H 0.06 1.77 7.06 -2.39 -0.02 1.75 16 31 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 32 H 0.06 1.53 6.41 -2.39 -0.02 1.52 16 33 H 0.35 9.83 8.05 -89.69 -0.72 9.11 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.05 1.68 4.35 -2.39 -0.01 1.67 16 36 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -65.15 324.01 4.38 -60.77 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.28 Total: 17.02 kcal Atomic # 6 Polarization: -49.71 SS G_CDS: 3.56 Total: -46.15 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -1.48 Total: -78.44 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.15 4.38 -60.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309412619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.440 kcal (2) G-P(sol) polarization free energy of solvation -65.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds