Wall clock time and date at job start Mon Mar 30 2020 06:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47188 * 2 1 4 4 H 1.09005 * 109.46876 * 304.99919 * 3 2 1 5 5 C 1.52995 * 109.47103 * 64.99839 * 3 2 1 6 6 C 1.50696 * 109.47240 * 185.00298 * 3 2 1 7 7 C 1.38288 * 119.92554 * 120.00206 * 6 3 2 8 8 C 1.38100 * 120.07490 * 179.97438 * 7 6 3 9 9 C 1.38914 * 119.92399 * 359.97438 * 8 7 6 10 10 N 1.39675 * 120.07712 * 179.97438 * 9 8 7 11 11 C 1.46498 * 120.00353 * 179.72315 * 10 9 8 12 12 H 1.09003 * 109.47280 * 325.00379 * 11 10 9 13 13 C 1.53005 * 109.46608 * 85.00149 * 11 10 9 14 14 C 1.50700 * 109.47370 * 205.00139 * 11 10 9 15 15 H 1.08003 * 119.99930 * 359.97438 * 14 11 10 16 16 C 1.37873 * 120.00131 * 180.02562 * 14 11 10 17 17 N 1.31521 * 120.00146 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00116 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47239 * 60.00278 * 18 16 14 20 20 H 1.48504 * 109.47445 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47399 * 300.00144 * 18 16 14 22 22 C 1.38915 * 119.85317 * 0.25647 * 9 8 7 23 23 C 1.38104 * 119.92020 * 359.48918 * 22 9 8 24 24 H 1.09000 * 109.47188 * 299.99827 * 1 2 3 25 25 H 1.09005 * 109.47383 * 59.99997 * 1 2 3 26 26 H 1.09002 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47188 * 240.00173 * 2 1 3 28 28 H 1.08996 * 109.47516 * 119.99991 * 2 1 3 29 29 H 1.08999 * 109.47188 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47313 * 300.00131 * 5 3 2 31 31 H 1.08996 * 109.47100 * 60.00424 * 5 3 2 32 32 H 1.08000 * 119.96699 * 359.95344 * 7 6 3 33 33 H 1.08000 * 120.04115 * 180.02562 * 8 7 6 34 34 H 0.97005 * 119.99698 * 0.02562 * 10 9 8 35 35 H 1.09007 * 109.46768 * 179.97438 * 13 11 10 36 36 H 1.08991 * 109.47209 * 299.99666 * 13 11 10 37 37 H 1.08996 * 109.47419 * 60.00382 * 13 11 10 38 38 H 0.96996 * 120.00284 * 180.02562 * 17 16 14 39 39 H 1.07991 * 120.04046 * 179.72622 * 22 9 8 40 40 H 1.07995 * 119.96395 * 180.25137 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5418 1.4443 -0.1239 7 6 4.1448 2.0744 -1.1972 8 6 5.5209 2.0784 -1.3135 9 6 6.2995 1.4490 -0.3505 10 7 7.6916 1.4507 -0.4653 11 6 8.5115 0.7917 0.5544 12 1 8.0426 0.9118 1.5311 13 6 8.6328 -0.6979 0.2266 14 6 9.8834 1.4148 0.5757 15 1 10.1211 2.2208 -0.1028 16 6 10.8356 0.9552 1.4605 17 7 10.5468 -0.0273 2.2857 18 14 12.5365 1.7271 1.4865 19 1 12.4192 3.1728 1.8047 20 1 13.3676 1.0591 2.5201 21 1 13.1747 1.5633 0.1557 22 6 5.6905 0.8129 0.7238 23 6 4.3141 0.8173 0.8367 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.9982 3.1543 1.3071 30 1 0.5489 2.1253 1.3969 31 1 2.0699 1.5876 2.1491 32 1 3.5389 2.5636 -1.9455 33 1 5.9912 2.5710 -2.1517 34 1 8.1156 1.8920 -1.2179 35 1 9.2433 -1.1882 0.9851 36 1 7.6405 -1.1486 0.2113 37 1 9.1016 -0.8181 -0.7500 38 1 11.2165 -0.3504 2.9085 39 1 6.2927 0.3189 1.4718 40 1 3.8400 0.3265 1.6738 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309714909.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:14 Heat of formation + Delta-G solvation = -2.503636 kcal Electronic energy + Delta-G solvation = -17612.871298 eV Core-core repulsion = 15005.197296 eV Total energy + Delta-G solvation = -2607.674002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.17777 -36.71680 -34.79956 -32.59530 -30.49224 -30.12756 -28.93941 -26.87712 -25.27181 -24.18393 -22.52282 -21.67336 -19.91841 -19.42662 -17.25566 -16.02885 -15.27648 -15.19758 -14.79840 -14.20791 -13.92150 -13.58357 -13.31525 -12.98201 -12.65636 -12.49217 -12.27167 -12.23465 -11.88610 -11.66794 -11.52846 -11.12434 -11.01855 -10.83787 -10.75097 -10.59624 -10.41611 -10.26552 -10.15325 -9.98363 -9.18950 -8.98528 -8.48701 -8.31943 -6.43548 -6.15714 -4.24200 2.05387 2.26035 3.24025 3.28915 3.30965 4.26195 4.47849 4.62677 4.91438 5.00014 5.15709 5.16523 5.40915 5.54202 5.56489 5.58441 5.63794 5.76256 5.94707 5.98763 6.03750 6.08445 6.10368 6.26196 6.41072 6.44251 6.51350 6.60266 6.73307 6.93766 7.02009 7.07577 7.10418 7.27242 7.38464 7.58350 7.69645 7.86578 8.08287 8.39667 8.73071 8.93291 9.43005 10.89822 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.045120 B = 0.004222 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.424042 B = 6629.828845 C = 6795.738232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.037 4.037 4 H 0.067 0.933 5 C -0.144 4.144 6 C -0.166 4.166 7 C -0.068 4.068 8 C -0.219 4.219 9 C 0.235 3.765 10 N -0.727 5.727 11 C 0.267 3.733 12 H 0.039 0.961 13 C -0.152 4.152 14 C -0.531 4.531 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.901 3.099 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.201 4.201 23 C -0.064 4.064 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.388 0.612 35 H 0.089 0.911 36 H 0.013 0.987 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.124 0.876 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.956 1.359 -3.799 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.055 4.055 4 H 0.085 0.915 5 C -0.201 4.201 6 C -0.169 4.169 7 C -0.087 4.087 8 C -0.242 4.242 9 C 0.126 3.874 10 N -0.349 5.349 11 C 0.165 3.835 12 H 0.057 0.943 13 C -0.211 4.211 14 C -0.569 4.569 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.729 3.271 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.224 4.224 23 C -0.082 4.082 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.221 0.779 35 H 0.107 0.893 36 H 0.032 0.968 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.693 1.127 -3.470 15.139 hybrid contribution 1.240 0.526 -0.258 1.371 sum -13.453 1.652 -3.728 14.057 Atomic orbital electron populations 1.21845 0.96425 1.01178 1.01598 1.21601 0.94952 0.96641 1.02209 1.19921 0.92002 0.95668 0.97953 0.91501 1.21896 1.00253 1.00611 0.97352 1.19308 0.94173 1.05593 0.97824 1.20566 0.93708 0.97798 0.96658 1.20476 0.93733 1.08702 1.01325 1.18056 0.84970 0.91615 0.92762 1.45577 1.01608 1.59188 1.28479 1.18695 0.89278 0.89024 0.86516 0.94288 1.22178 0.98334 0.99308 1.01255 1.21189 0.96404 1.18789 1.20564 0.92237 1.24872 0.98913 0.94857 0.95040 1.69867 1.34847 1.26225 1.21516 0.86506 0.83378 0.79409 0.77820 1.20169 1.21093 1.20178 1.20782 0.94595 1.06858 1.00149 1.20597 0.92915 0.97340 0.97386 0.92646 0.93032 0.93152 0.92044 0.91981 0.92838 0.93006 0.92657 0.87447 0.87205 0.77877 0.89267 0.96771 0.95340 0.92536 0.85827 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.67 37.16 0.36 -1.03 16 2 C -0.12 -1.29 5.14 -26.73 -0.14 -1.43 16 3 C -0.04 -0.44 2.56 -91.77 -0.23 -0.68 16 4 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 5 C -0.14 -1.60 8.76 37.16 0.33 -1.27 16 6 C -0.17 -2.50 4.79 -104.59 -0.50 -3.00 16 7 C -0.07 -1.06 9.66 -39.61 -0.38 -1.44 16 8 C -0.22 -3.77 9.90 -39.38 -0.39 -4.16 16 9 C 0.24 4.65 6.64 -83.78 -0.56 4.09 16 10 N -0.73 -15.53 5.24 -53.28 -0.28 -15.81 16 11 C 0.27 6.60 2.25 -69.08 -0.16 6.44 16 12 H 0.04 1.05 6.51 -51.93 -0.34 0.72 16 13 C -0.15 -3.66 9.19 37.16 0.34 -3.32 16 14 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 15 H 0.06 1.55 7.73 -52.48 -0.41 1.15 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 18 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C -0.20 -3.90 8.82 -39.38 -0.35 -4.24 16 23 C -0.06 -1.05 8.75 -39.61 -0.35 -1.40 16 24 H 0.05 0.47 6.57 -51.93 -0.34 0.13 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.70 7.56 -51.93 -0.39 0.31 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 31 H 0.05 0.63 7.38 -51.93 -0.38 0.25 16 32 H 0.11 1.39 7.94 -52.49 -0.42 0.98 16 33 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.39 7.78 8.55 -40.82 -0.35 7.44 16 35 H 0.09 2.33 6.07 -51.92 -0.32 2.02 16 36 H 0.01 0.30 7.64 -51.93 -0.40 -0.09 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.12 2.58 6.08 -52.49 -0.32 2.26 16 40 H 0.11 1.60 7.15 -52.49 -0.38 1.23 16 LS Contribution 318.26 15.07 4.80 4.80 Total: -1.00 -27.00 318.26 -8.75 -35.75 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.45 Total: 7.63 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -2.42 Total: -24.20 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.35 Total: -39.68 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.00 -8.75 -35.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309714909.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.248 kcal (2) G-P(sol) polarization free energy of solvation -27.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds