Wall clock time and date at job start Mon Mar 30 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47188 * 2 1 4 4 H 1.09005 * 109.46876 * 304.99919 * 3 2 1 5 5 C 1.52995 * 109.47103 * 64.99839 * 3 2 1 6 6 C 1.50696 * 109.47240 * 185.00298 * 3 2 1 7 7 C 1.38288 * 119.92554 * 120.00206 * 6 3 2 8 8 C 1.38100 * 120.07490 * 179.97438 * 7 6 3 9 9 C 1.38914 * 119.92399 * 359.97438 * 8 7 6 10 10 N 1.39675 * 120.07712 * 179.97438 * 9 8 7 11 11 C 1.46498 * 120.00353 * 179.72315 * 10 9 8 12 12 H 1.09003 * 109.47280 * 325.00379 * 11 10 9 13 13 C 1.53005 * 109.46608 * 85.00149 * 11 10 9 14 14 C 1.50700 * 109.47370 * 205.00139 * 11 10 9 15 15 H 1.08003 * 119.99930 * 359.97438 * 14 11 10 16 16 C 1.37873 * 120.00131 * 180.02562 * 14 11 10 17 17 N 1.31521 * 120.00146 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00116 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47239 * 60.00278 * 18 16 14 20 20 H 1.48504 * 109.47445 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47399 * 300.00144 * 18 16 14 22 22 C 1.38915 * 119.85317 * 0.25647 * 9 8 7 23 23 C 1.38104 * 119.92020 * 359.48918 * 22 9 8 24 24 H 1.09000 * 109.47188 * 299.99827 * 1 2 3 25 25 H 1.09005 * 109.47383 * 59.99997 * 1 2 3 26 26 H 1.09002 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47188 * 240.00173 * 2 1 3 28 28 H 1.08996 * 109.47516 * 119.99991 * 2 1 3 29 29 H 1.08999 * 109.47188 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47313 * 300.00131 * 5 3 2 31 31 H 1.08996 * 109.47100 * 60.00424 * 5 3 2 32 32 H 1.08000 * 119.96699 * 359.95344 * 7 6 3 33 33 H 1.08000 * 120.04115 * 180.02562 * 8 7 6 34 34 H 0.97005 * 119.99698 * 0.02562 * 10 9 8 35 35 H 1.09007 * 109.46768 * 179.97438 * 13 11 10 36 36 H 1.08991 * 109.47209 * 299.99666 * 13 11 10 37 37 H 1.08996 * 109.47419 * 60.00382 * 13 11 10 38 38 H 0.96996 * 120.00284 * 180.02562 * 17 16 14 39 39 H 1.07991 * 120.04046 * 179.72622 * 22 9 8 40 40 H 1.07995 * 119.96395 * 180.25137 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5418 1.4443 -0.1239 7 6 4.1448 2.0744 -1.1972 8 6 5.5209 2.0784 -1.3135 9 6 6.2995 1.4490 -0.3505 10 7 7.6916 1.4507 -0.4653 11 6 8.5115 0.7917 0.5544 12 1 8.0426 0.9118 1.5311 13 6 8.6328 -0.6979 0.2266 14 6 9.8834 1.4148 0.5757 15 1 10.1211 2.2208 -0.1028 16 6 10.8356 0.9552 1.4605 17 7 10.5468 -0.0273 2.2857 18 14 12.5365 1.7271 1.4865 19 1 12.4192 3.1728 1.8047 20 1 13.3676 1.0591 2.5201 21 1 13.1747 1.5633 0.1557 22 6 5.6905 0.8129 0.7238 23 6 4.3141 0.8173 0.8367 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.9982 3.1543 1.3071 30 1 0.5489 2.1253 1.3969 31 1 2.0699 1.5876 2.1491 32 1 3.5389 2.5636 -1.9455 33 1 5.9912 2.5710 -2.1517 34 1 8.1156 1.8920 -1.2179 35 1 9.2433 -1.1882 0.9851 36 1 7.6405 -1.1486 0.2113 37 1 9.1016 -0.8181 -0.7500 38 1 11.2165 -0.3504 2.9085 39 1 6.2927 0.3189 1.4718 40 1 3.8400 0.3265 1.6738 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309714909.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:13 Heat of formation + Delta-G solvation = -15.321228 kcal Electronic energy + Delta-G solvation = -17613.427110 eV Core-core repulsion = 15005.197296 eV Total energy + Delta-G solvation = -2608.229814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52145 -38.08672 -36.26753 -34.36433 -31.90438 -31.46300 -30.27608 -28.25586 -27.27718 -25.20300 -23.94096 -23.08859 -21.52057 -20.54968 -19.00778 -17.68275 -17.04415 -16.43345 -16.10540 -15.56878 -15.25953 -14.82160 -14.68326 -14.39553 -14.11674 -13.91368 -13.69124 -13.44967 -13.25369 -12.93586 -12.83023 -12.75543 -12.58712 -12.37132 -12.29977 -12.14480 -11.78546 -11.57281 -11.35509 -11.20813 -11.08170 -10.69357 -10.40316 -9.68620 -8.21715 -7.95403 -6.35633 0.68185 0.89312 1.41433 1.42682 1.50647 2.36188 2.97846 3.08691 3.13104 3.93819 4.01821 4.25180 4.27784 4.31200 4.61872 4.65617 4.69114 4.70974 4.76188 4.85659 4.90193 4.94373 5.03901 5.11417 5.14395 5.23363 5.24830 5.29809 5.31041 5.42963 5.51228 5.58119 5.62626 5.65500 5.75351 5.83882 5.98658 6.08781 6.26643 6.56239 6.86427 7.24039 7.37833 8.85481 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.045120 B = 0.004222 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.424042 B = 6629.828845 C = 6795.738232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.035 4.035 4 H 0.083 0.917 5 C -0.143 4.143 6 C -0.154 4.154 7 C -0.068 4.068 8 C -0.216 4.216 9 C 0.205 3.795 10 N -0.735 5.735 11 C 0.278 3.722 12 H 0.007 0.993 13 C -0.137 4.137 14 C -0.551 4.551 15 H 0.061 0.939 16 C 0.018 3.982 17 N -0.914 5.914 18 Si 0.967 3.033 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.269 1.269 22 C -0.224 4.224 23 C -0.067 4.067 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.142 0.858 33 H 0.126 0.874 34 H 0.393 0.607 35 H 0.066 0.934 36 H 0.021 0.979 37 H 0.027 0.973 38 H 0.266 0.734 39 H 0.096 0.904 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.705 2.358 -4.890 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.054 4.054 4 H 0.102 0.898 5 C -0.200 4.200 6 C -0.156 4.156 7 C -0.087 4.087 8 C -0.239 4.239 9 C 0.099 3.901 10 N -0.359 5.359 11 C 0.174 3.826 12 H 0.024 0.976 13 C -0.196 4.196 14 C -0.589 4.589 15 H 0.079 0.921 16 C -0.182 4.182 17 N -0.552 5.552 18 Si 0.792 3.208 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.194 1.194 22 C -0.247 4.247 23 C -0.085 4.085 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.160 0.840 33 H 0.144 0.856 34 H 0.227 0.773 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.487 2.133 -4.575 17.243 hybrid contribution 1.608 0.216 0.079 1.625 sum -14.879 2.349 -4.497 15.720 Atomic orbital electron populations 1.21809 0.94563 1.01897 1.02368 1.21577 0.96578 0.95692 1.01519 1.20000 0.89510 0.96696 0.99167 0.89842 1.21887 1.01687 0.99992 0.96438 1.19750 0.96078 1.03233 0.96532 1.20991 0.93226 0.97187 0.97276 1.20730 0.94498 1.07779 1.00894 1.18301 0.84367 0.93348 0.94063 1.45230 1.02201 1.60323 1.28187 1.18304 0.88867 0.89352 0.86105 0.97566 1.21982 0.98190 0.99189 1.00228 1.21531 0.97479 1.19061 1.20804 0.92115 1.25699 1.02615 0.95270 0.94614 1.69998 1.35974 1.27250 1.21993 0.85480 0.78817 0.78494 0.78049 1.19778 1.20689 1.19393 1.20755 0.95808 1.08022 1.00118 1.20774 0.91820 0.97513 0.98413 0.91920 0.92179 0.92574 0.92844 0.92695 0.93307 0.90826 0.93369 0.84032 0.85566 0.77343 0.91517 0.96015 0.95339 0.92482 0.88583 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.67 71.98 0.70 -1.53 16 2 C -0.12 -2.27 5.14 30.59 0.16 -2.11 16 3 C -0.04 -0.74 2.56 -11.54 -0.03 -0.77 16 4 H 0.08 1.52 7.87 -2.38 -0.02 1.50 16 5 C -0.14 -2.77 8.76 71.98 0.63 -2.14 16 6 C -0.15 -4.29 4.79 -19.84 -0.09 -4.39 16 7 C -0.07 -1.92 9.66 22.25 0.21 -1.71 16 8 C -0.22 -7.14 9.90 22.40 0.22 -6.92 16 9 C 0.21 8.24 6.64 38.22 0.25 8.49 16 10 N -0.73 -32.30 5.24 -322.49 -1.69 -33.99 16 11 C 0.28 14.29 2.25 44.25 0.10 14.39 16 12 H 0.01 0.38 6.51 -2.39 -0.02 0.36 16 13 C -0.14 -6.87 9.19 71.98 0.66 -6.21 16 14 C -0.55 -30.01 8.73 25.60 0.22 -29.78 16 15 H 0.06 3.21 7.73 -2.91 -0.02 3.19 16 16 C 0.02 0.99 5.30 84.65 0.45 1.44 16 17 N -0.91 -51.83 11.32 21.45 0.24 -51.59 16 18 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 C -0.22 -8.99 8.82 22.40 0.20 -8.79 16 23 C -0.07 -2.18 8.75 22.25 0.19 -1.98 16 24 H 0.06 0.85 6.57 -2.39 -0.02 0.83 16 25 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.15 7.56 -2.39 -0.02 1.13 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.12 6.57 -2.39 -0.02 1.10 16 31 H 0.05 1.00 7.38 -2.39 -0.02 0.98 16 32 H 0.14 3.04 7.94 -2.91 -0.02 3.02 16 33 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 34 H 0.39 16.04 8.55 -92.70 -0.79 15.25 16 35 H 0.07 3.63 6.07 -2.38 -0.01 3.62 16 36 H 0.02 1.00 7.64 -2.39 -0.02 0.98 16 37 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.10 4.32 6.08 -2.92 -0.02 4.30 16 40 H 0.12 3.58 7.15 -2.91 -0.02 3.56 16 Total: -1.00 -58.85 318.26 4.67 -54.18 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.22 Total: 28.60 kcal Atomic # 6 Polarization: -45.87 SS G_CDS: 3.87 Total: -42.00 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -1.45 Total: -85.58 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -58.85 4.67 -54.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309714909.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.855 kcal (2) G-P(sol) polarization free energy of solvation -58.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds