Wall clock time and date at job start Mon Mar 30 2020 06:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.08990 * 109.47172 * 55.00186 * 3 2 1 5 5 C 1.52996 * 109.46864 * 294.99613 * 3 2 1 6 6 C 1.50702 * 109.46710 * 174.99928 * 3 2 1 7 7 C 1.38289 * 119.92561 * 239.99546 * 6 3 2 8 8 C 1.38098 * 120.07180 * 180.02562 * 7 6 3 9 9 C 1.38910 * 119.92853 * 0.02562 * 8 7 6 10 10 N 1.39672 * 120.07560 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00302 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47186 * 325.00130 * 11 10 9 13 13 C 1.53000 * 109.47265 * 84.99634 * 11 10 9 14 14 C 1.50696 * 109.47443 * 204.99589 * 11 10 9 15 15 H 1.08001 * 120.00241 * 354.36438 * 14 11 10 16 16 C 1.37885 * 120.00172 * 174.35983 * 14 11 10 17 17 N 1.31512 * 119.99792 * 156.86713 * 16 14 11 18 18 Si 1.86797 * 119.99848 * 336.86751 * 16 14 11 19 19 H 1.48501 * 109.46944 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47182 * 299.99653 * 18 16 14 21 21 H 1.48501 * 109.47156 * 59.99862 * 18 16 14 22 22 C 1.38916 * 119.85043 * 0.24509 * 9 8 7 23 23 C 1.38098 * 119.92224 * 359.49932 * 22 9 8 24 24 H 1.08999 * 109.47457 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47188 * 300.00381 * 1 2 3 26 26 H 1.08998 * 109.47101 * 59.99769 * 1 2 3 27 27 H 1.09000 * 109.46729 * 239.99887 * 2 1 3 28 28 H 1.09003 * 109.46816 * 119.99849 * 2 1 3 29 29 H 1.09000 * 109.47823 * 300.00208 * 5 3 2 30 30 H 1.09004 * 109.47270 * 60.01004 * 5 3 2 31 31 H 1.09000 * 109.46731 * 180.02562 * 5 3 2 32 32 H 1.07997 * 119.95730 * 0.02562 * 7 6 3 33 33 H 1.08004 * 120.03374 * 179.97438 * 8 7 6 34 34 H 0.97009 * 120.00166 * 359.97438 * 10 9 8 35 35 H 1.08998 * 109.47063 * 53.10663 * 13 11 10 36 36 H 1.09000 * 109.47182 * 173.10626 * 13 11 10 37 37 H 1.09001 * 109.47137 * 293.11248 * 13 11 10 38 38 H 0.97001 * 120.00406 * 354.92575 * 17 16 14 39 39 H 1.08000 * 120.03630 * 179.73261 * 22 9 8 40 40 H 1.08004 * 119.96194 * 180.25303 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4442 0.1239 7 6 4.1449 2.0743 1.1971 8 6 5.5210 2.0781 1.3133 9 6 6.2996 1.4487 0.3504 10 7 7.6917 1.4512 0.4646 11 6 8.5112 0.7864 -0.5516 12 1 7.9932 -0.1024 -0.9117 13 6 8.7519 1.7448 -1.7197 14 6 9.8334 0.3876 0.0515 15 1 10.0793 0.6866 1.0597 16 6 10.7293 -0.3593 -0.6839 17 7 12.0097 -0.3319 -0.3847 18 14 10.1244 -1.4099 -2.1050 19 1 11.2764 -2.1089 -2.7292 20 1 9.1512 -2.4118 -1.6007 21 1 9.4649 -0.5440 -3.1152 22 6 5.6909 0.8216 -0.7294 23 6 4.3141 0.8169 -0.8367 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0699 1.5875 -2.1492 30 1 0.5490 2.1253 -1.3969 31 1 1.9990 3.1540 -1.3075 32 1 3.5390 2.5637 1.9451 33 1 5.9914 2.5707 2.1515 34 1 8.1159 1.8931 1.2168 35 1 9.1581 2.6831 -1.3421 36 1 9.4599 1.2970 -2.4171 37 1 7.8093 1.9370 -2.2321 38 1 12.3341 0.2688 0.3044 39 1 6.2935 0.3351 -1.4821 40 1 3.8400 0.3261 -1.6738 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309714912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:18 Heat of formation + Delta-G solvation = -17.390367 kcal Electronic energy + Delta-G solvation = -17696.479922 eV Core-core repulsion = 15088.160383 eV Total energy + Delta-G solvation = -2608.319539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57542 -38.17671 -36.31431 -34.51217 -32.20294 -31.58326 -30.46663 -28.34784 -26.83352 -25.19887 -23.98090 -23.00091 -21.38633 -20.58789 -19.86264 -18.12665 -16.85539 -16.46030 -15.88404 -15.44331 -15.40568 -14.85695 -14.79031 -14.51288 -14.35106 -14.08491 -13.86368 -13.56513 -13.40128 -13.20828 -12.91052 -12.74995 -12.42764 -12.40475 -12.06090 -11.84640 -11.74598 -11.58050 -11.36118 -11.22702 -11.19845 -10.59841 -10.46334 -9.72084 -8.87136 -8.03398 -6.44624 0.64705 0.84899 1.44565 1.49988 1.69525 2.43695 2.82563 2.93595 3.07721 3.91526 4.00013 4.20099 4.24965 4.30038 4.46007 4.58875 4.63898 4.67357 4.70580 4.75568 4.77764 4.84536 4.89659 4.94891 5.10970 5.15805 5.23062 5.23322 5.28100 5.30292 5.48086 5.49128 5.57819 5.61098 5.70120 5.72700 5.95424 5.96417 6.19210 6.36753 6.76840 7.09145 7.30628 8.52844 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.034691 B = 0.004834 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.923164 B = 5791.400826 C = 6145.087238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.036 4.036 4 H 0.080 0.920 5 C -0.142 4.142 6 C -0.152 4.152 7 C -0.069 4.069 8 C -0.218 4.218 9 C 0.203 3.797 10 N -0.733 5.733 11 C 0.255 3.745 12 H 0.029 0.971 13 C -0.152 4.152 14 C -0.626 4.626 15 H 0.027 0.973 16 C -0.004 4.004 17 N -0.923 5.923 18 Si 1.071 2.929 19 H -0.283 1.283 20 H -0.267 1.267 21 H -0.244 1.244 22 C -0.223 4.223 23 C -0.064 4.064 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.139 0.861 33 H 0.120 0.880 34 H 0.391 0.609 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.257 0.743 39 H 0.109 0.891 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.662 3.373 -1.571 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.055 4.055 4 H 0.098 0.902 5 C -0.199 4.199 6 C -0.154 4.154 7 C -0.087 4.087 8 C -0.241 4.241 9 C 0.098 3.902 10 N -0.358 5.358 11 C 0.150 3.850 12 H 0.047 0.953 13 C -0.211 4.211 14 C -0.663 4.663 15 H 0.045 0.955 16 C -0.204 4.204 17 N -0.557 5.557 18 Si 0.892 3.108 19 H -0.209 1.209 20 H -0.192 1.192 21 H -0.168 1.168 22 C -0.246 4.246 23 C -0.083 4.083 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.156 0.844 33 H 0.138 0.862 34 H 0.224 0.776 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.127 0.873 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.025 2.187 -2.855 22.316 hybrid contribution 0.797 1.325 1.944 2.484 sum -21.227 3.513 -0.911 21.535 Atomic orbital electron populations 1.21812 0.94679 1.01882 1.02333 1.21583 0.96507 0.95678 1.01615 1.20004 0.89529 0.96705 0.99234 0.90175 1.21883 1.01679 1.00011 0.96368 1.19775 0.96120 1.03035 0.96453 1.20973 0.93102 0.97300 0.97358 1.20708 0.94611 1.07834 1.00922 1.18303 0.83940 0.93660 0.94327 1.45049 1.02290 1.60344 1.28119 1.18653 0.88955 0.90820 0.86601 0.95318 1.22397 0.99850 1.00074 0.98790 1.22230 1.03067 1.39838 1.01196 0.95517 1.27011 0.92826 0.97502 1.03109 1.70967 1.14903 1.38814 1.31019 0.83720 0.76148 0.76466 0.74477 1.20887 1.19238 1.16791 1.20806 0.95894 1.07700 1.00157 1.20833 0.91829 0.97185 0.98444 0.92598 0.92401 0.91796 0.92302 0.93021 0.92961 0.90967 0.93289 0.84368 0.86193 0.77624 0.94254 0.93133 0.93262 0.93424 0.87320 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 71.98 0.70 -1.35 16 2 C -0.12 -2.07 5.14 30.60 0.16 -1.92 16 3 C -0.04 -0.69 2.56 -11.54 -0.03 -0.72 16 4 H 0.08 1.37 7.87 -2.39 -0.02 1.35 16 5 C -0.14 -2.41 8.76 71.98 0.63 -1.78 16 6 C -0.15 -3.88 4.79 -19.84 -0.09 -3.97 16 7 C -0.07 -1.84 9.66 22.25 0.21 -1.62 16 8 C -0.22 -6.94 9.90 22.40 0.22 -6.72 16 9 C 0.20 7.60 6.64 38.22 0.25 7.86 16 10 N -0.73 -31.02 5.24 -322.52 -1.69 -32.71 16 11 C 0.26 12.01 1.85 44.24 0.08 12.09 16 12 H 0.03 1.37 5.07 -2.39 -0.01 1.36 16 13 C -0.15 -6.62 9.15 71.98 0.66 -5.96 16 14 C -0.63 -35.09 8.95 25.60 0.23 -34.86 16 15 H 0.03 1.63 7.96 -2.91 -0.02 1.61 16 16 C 0.00 -0.20 5.19 84.66 0.44 0.24 16 17 N -0.92 -56.62 13.70 21.45 0.29 -56.32 16 18 Si 1.07 48.72 26.44 68.60 1.81 50.54 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.24 -9.84 6.15 99.48 0.61 -9.23 16 22 C -0.22 -7.87 8.89 22.40 0.20 -7.67 16 23 C -0.06 -1.85 8.75 22.25 0.19 -1.66 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.77 6.56 -2.39 -0.02 0.76 16 27 H 0.06 1.09 7.57 -2.39 -0.02 1.07 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.92 7.38 -2.39 -0.02 0.90 16 30 H 0.07 0.96 6.57 -2.39 -0.02 0.95 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.14 2.88 7.94 -2.91 -0.02 2.86 16 33 H 0.12 3.53 8.06 -2.91 -0.02 3.50 16 34 H 0.39 16.25 8.54 -92.70 -0.79 15.46 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 2.23 5.48 -2.39 -0.01 2.21 16 37 H 0.05 1.90 7.62 -2.39 -0.02 1.88 16 38 H 0.26 15.93 8.73 -92.71 -0.81 15.12 16 39 H 0.11 4.02 6.00 -2.91 -0.02 4.00 16 40 H 0.13 3.17 7.15 -2.91 -0.02 3.15 16 Total: -1.00 -61.97 314.83 4.36 -57.61 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.09 Total: 28.94 kcal Atomic # 6 Polarization: -51.91 SS G_CDS: 3.85 Total: -48.06 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -1.40 Total: -89.03 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 1.81 Total: 50.54 kcal Total: -61.97 4.36 -57.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309714912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.219 kcal (2) G-P(sol) polarization free energy of solvation -61.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds