Wall clock time and date at job start Mon Mar 30 2020 06:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47069 * 2 1 4 4 H 1.09000 * 109.47486 * 305.00460 * 3 2 1 5 5 C 1.53006 * 109.46623 * 65.00288 * 3 2 1 6 6 C 1.50697 * 109.46961 * 185.00027 * 3 2 1 7 7 C 1.38288 * 119.92912 * 299.72922 * 6 3 2 8 8 C 1.38098 * 120.07452 * 179.72796 * 7 6 3 9 9 C 1.38909 * 119.92685 * 0.54523 * 8 7 6 10 10 N 1.39679 * 120.07640 * 179.75050 * 9 8 7 11 11 C 1.46501 * 119.99943 * 359.97438 * 10 9 8 12 12 H 1.09008 * 109.46727 * 35.00312 * 11 10 9 13 13 C 1.52995 * 109.47418 * 275.00646 * 11 10 9 14 14 C 1.50701 * 109.46903 * 154.99714 * 11 10 9 15 15 H 1.08001 * 119.99997 * 0.02562 * 14 11 10 16 16 C 1.37870 * 119.99980 * 179.97438 * 14 11 10 17 17 N 1.31519 * 120.00263 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00029 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.46768 * 60.00517 * 18 16 14 20 20 H 1.48507 * 109.47017 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47105 * 300.00169 * 18 16 14 22 22 C 1.38916 * 119.85020 * 359.72978 * 9 8 7 23 23 C 1.38106 * 119.92100 * 359.97438 * 22 9 8 24 24 H 1.09000 * 109.47048 * 299.99452 * 1 2 3 25 25 H 1.08994 * 109.47199 * 59.99565 * 1 2 3 26 26 H 1.09001 * 109.46743 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47048 * 240.00548 * 2 1 3 28 28 H 1.08994 * 109.47199 * 120.00435 * 2 1 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 5 3 2 30 30 H 1.08993 * 109.46955 * 300.00075 * 5 3 2 31 31 H 1.09000 * 109.47050 * 59.99904 * 5 3 2 32 32 H 1.07998 * 119.96076 * 359.97438 * 7 6 3 33 33 H 1.08008 * 120.03759 * 180.27426 * 8 7 6 34 34 H 0.96999 * 119.99618 * 179.97438 * 10 9 8 35 35 H 1.08993 * 109.47686 * 59.99724 * 13 11 10 36 36 H 1.08997 * 109.47192 * 180.02562 * 13 11 10 37 37 H 1.09008 * 109.46899 * 299.99560 * 13 11 10 38 38 H 0.96995 * 120.00195 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.03726 * 179.97438 * 22 9 8 40 40 H 1.07996 * 119.95866 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1264 1.3075 6 6 3.5419 1.4443 -0.1238 7 6 4.3143 0.8208 0.8390 8 6 5.6906 0.8157 0.7255 9 6 6.2995 1.4476 -0.3513 10 7 7.6916 1.4489 -0.4663 11 6 8.5112 0.7838 0.5496 12 1 7.9925 -0.1045 0.9103 13 6 8.7533 1.7423 1.7173 14 6 9.8326 0.3835 -0.0542 15 1 10.0412 0.6029 -1.0909 16 6 10.7756 -0.2620 0.7170 17 7 10.5218 -0.5288 1.9796 18 14 12.4139 -0.7576 -0.0313 19 1 13.1199 0.4528 -0.5227 20 1 13.2447 -1.4320 0.9986 21 1 12.1792 -1.6882 -1.1644 22 6 5.5209 2.0779 -1.3137 23 6 4.1448 2.0739 -1.1973 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.9989 3.1540 1.3077 30 1 0.5490 2.1250 1.3970 31 1 2.0699 1.5873 2.1492 32 1 3.8405 0.3338 1.6784 33 1 6.2931 0.3248 1.4755 34 1 8.1155 1.8902 -1.2189 35 1 7.7976 2.0318 2.1540 36 1 9.3635 1.2475 2.4729 37 1 9.2720 2.6306 1.3566 38 1 11.1851 -0.9833 2.5221 39 1 5.9912 2.5705 -2.1519 40 1 3.5388 2.5634 -1.9454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309714914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:22 Heat of formation + Delta-G solvation = -2.458828 kcal Electronic energy + Delta-G solvation = -17612.293802 eV Core-core repulsion = 15004.621743 eV Total energy + Delta-G solvation = -2607.672059 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.17777 -36.71600 -34.79916 -32.59503 -30.49202 -30.12716 -28.93922 -26.87750 -25.27059 -24.18394 -22.52456 -21.67422 -19.91567 -19.42648 -17.25558 -16.02770 -15.27615 -15.19853 -14.79672 -14.20860 -13.94392 -13.58076 -13.18439 -12.98783 -12.88253 -12.38225 -12.25345 -12.22579 -11.88793 -11.63985 -11.57087 -11.07402 -11.05513 -10.88746 -10.71888 -10.57358 -10.43010 -10.26685 -10.15224 -9.98236 -9.19029 -8.98339 -8.48661 -8.31999 -6.43517 -6.15670 -4.24148 2.05387 2.26037 3.24090 3.28953 3.31014 4.26233 4.47862 4.62669 4.91655 5.00196 5.15940 5.16680 5.40996 5.54338 5.56386 5.58342 5.63649 5.76370 5.94739 5.98835 6.03720 6.08604 6.10565 6.26120 6.41032 6.44402 6.51352 6.60224 6.73200 6.93706 7.01897 7.07524 7.10435 7.27226 7.38481 7.58377 7.69618 7.86522 8.08347 8.39733 8.73113 8.93293 9.43084 10.89882 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.042042 B = 0.004232 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.834305 B = 6615.326843 C = 6719.475308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.037 4.037 4 H 0.067 0.933 5 C -0.144 4.144 6 C -0.166 4.166 7 C -0.064 4.064 8 C -0.201 4.201 9 C 0.235 3.765 10 N -0.727 5.727 11 C 0.267 3.733 12 H 0.040 0.960 13 C -0.152 4.152 14 C -0.531 4.531 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.901 3.099 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.219 4.219 23 C -0.069 4.069 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.388 0.612 35 H 0.013 0.987 36 H 0.089 0.911 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.110 0.890 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.861 3.267 -2.633 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.055 4.055 4 H 0.085 0.915 5 C -0.201 4.201 6 C -0.169 4.169 7 C -0.082 4.082 8 C -0.224 4.224 9 C 0.126 3.874 10 N -0.349 5.349 11 C 0.165 3.835 12 H 0.057 0.943 13 C -0.211 4.211 14 C -0.569 4.569 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.729 3.271 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.242 4.242 23 C -0.087 4.087 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.221 0.779 35 H 0.032 0.968 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.128 0.872 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.597 3.060 -2.289 15.089 hybrid contribution 1.210 -0.097 -0.639 1.371 sum -13.388 2.963 -2.928 14.021 Atomic orbital electron populations 1.21844 0.96427 1.01186 1.01583 1.21603 0.94949 0.96632 1.02242 1.19922 0.92002 0.95680 0.97938 0.91499 1.21898 1.00259 1.00582 0.97362 1.19308 0.94168 1.05681 0.97741 1.20596 0.92907 0.97345 0.97389 1.20782 0.94620 1.06585 1.00400 1.18055 0.84968 0.91609 0.92768 1.45576 1.01629 1.59137 1.28511 1.18696 0.89320 0.90640 0.84861 0.94273 1.22178 0.98574 0.99187 1.01145 1.21188 0.99742 1.38800 0.97207 0.92236 1.24871 0.98659 0.95339 0.94800 1.69867 1.35360 1.40901 1.06336 0.86509 0.83005 0.78784 0.78834 1.20179 1.21090 1.20164 1.20478 0.93738 1.08683 1.01341 1.20566 0.93708 0.97808 0.96650 0.92652 0.93039 0.93144 0.92018 0.91973 0.92861 0.92997 0.92669 0.87276 0.85825 0.77878 0.96783 0.89261 0.95341 0.92536 0.87205 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.67 37.16 0.36 -1.04 16 2 C -0.12 -1.30 5.14 -26.73 -0.14 -1.44 16 3 C -0.04 -0.44 2.56 -91.77 -0.23 -0.68 16 4 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 5 C -0.14 -1.58 8.76 37.16 0.33 -1.26 16 6 C -0.17 -2.50 4.78 -104.59 -0.50 -3.00 16 7 C -0.06 -1.05 8.75 -39.61 -0.35 -1.40 16 8 C -0.20 -3.90 8.85 -39.38 -0.35 -4.25 16 9 C 0.24 4.65 6.64 -83.78 -0.56 4.09 16 10 N -0.73 -15.53 5.24 -53.29 -0.28 -15.81 16 11 C 0.27 6.60 2.25 -69.08 -0.16 6.44 16 12 H 0.04 1.06 6.48 -51.92 -0.34 0.72 16 13 C -0.15 -3.67 9.21 37.15 0.34 -3.32 16 14 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 18 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.22 -3.77 9.90 -39.38 -0.39 -4.16 16 23 C -0.07 -1.06 9.66 -39.61 -0.38 -1.44 16 24 H 0.05 0.47 6.56 -51.93 -0.34 0.13 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.71 7.58 -51.93 -0.39 0.32 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 31 H 0.05 0.62 7.37 -51.93 -0.38 0.24 16 32 H 0.11 1.60 7.15 -52.49 -0.38 1.23 16 33 H 0.12 2.58 6.12 -52.48 -0.32 2.26 16 34 H 0.39 7.78 8.55 -40.82 -0.35 7.43 16 35 H 0.01 0.30 7.71 -51.93 -0.40 -0.10 16 36 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 37 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.11 1.39 7.94 -52.49 -0.42 0.98 16 LS Contribution 318.40 15.07 4.80 4.80 Total: -1.00 -27.00 318.40 -8.75 -35.75 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.46 Total: 7.64 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -2.42 Total: -24.21 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.35 Total: -39.68 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.00 -8.75 -35.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309714914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.293 kcal (2) G-P(sol) polarization free energy of solvation -26.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds