Wall clock time and date at job start Mon Mar 30 2020 06:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47381 * 2 1 4 4 N 1.46505 * 109.46884 * 119.99478 * 2 1 3 5 5 C 1.38853 * 120.00646 * 275.00171 * 4 2 1 6 6 C 1.39559 * 119.84677 * 179.97438 * 5 4 2 7 7 C 1.36339 * 120.16380 * 179.97438 * 6 5 4 8 8 C 1.40895 * 119.83328 * 359.97438 * 7 6 5 9 9 C 1.41142 * 120.15050 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00179 * 335.18844 * 9 8 7 11 11 C 1.39862 * 119.99548 * 155.19715 * 9 8 7 12 12 N 1.30901 * 120.00443 * 342.28826 * 11 9 8 13 13 Si 1.86803 * 119.99968 * 162.28586 * 11 9 8 14 14 H 1.48501 * 109.47245 * 94.65287 * 13 11 9 15 15 H 1.48503 * 109.47218 * 214.65385 * 13 11 9 16 16 H 1.48504 * 109.46956 * 334.65203 * 13 11 9 17 17 C 1.40886 * 119.68848 * 0.27755 * 8 7 6 18 18 C 1.36336 * 119.83300 * 359.43811 * 17 8 7 19 19 C 1.53001 * 109.47655 * 239.99492 * 2 1 3 20 20 C 1.52995 * 109.47157 * 300.00440 * 19 2 1 21 21 C 1.53004 * 109.46759 * 60.00224 * 19 2 1 22 22 C 1.52997 * 109.47289 * 179.97438 * 19 2 1 23 23 H 1.09002 * 109.47381 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47660 * 300.00608 * 1 2 3 25 25 H 1.09007 * 109.46911 * 60.00549 * 1 2 3 26 26 H 0.97003 * 119.99738 * 95.00069 * 4 2 1 27 27 H 1.08005 * 119.91927 * 359.97438 * 6 5 4 28 28 H 1.08003 * 120.08637 * 179.97438 * 7 6 5 29 29 H 0.97003 * 120.00170 * 180.02562 * 12 11 9 30 30 H 1.07997 * 120.07487 * 179.70336 * 17 8 7 31 31 H 1.08004 * 119.91819 * 180.27851 * 18 17 8 32 32 H 1.09000 * 109.47332 * 59.99976 * 20 19 2 33 33 H 1.09005 * 109.47377 * 179.97438 * 20 19 2 34 34 H 1.09000 * 109.47400 * 299.99970 * 20 19 2 35 35 H 1.09002 * 109.46943 * 60.00310 * 21 19 2 36 36 H 1.08996 * 109.46674 * 180.02562 * 21 19 2 37 37 H 1.08998 * 109.47101 * 300.00267 * 21 19 2 38 38 H 1.09002 * 109.47074 * 60.00546 * 22 19 2 39 39 H 1.09005 * 109.47019 * 179.97438 * 22 19 2 40 40 H 1.09002 * 109.47566 * 300.00397 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1508 0.0021 2.3924 6 6 2.6158 -0.6591 3.5300 7 6 2.7490 0.0149 4.7077 8 6 2.4164 1.3824 4.7742 9 6 2.5522 2.0867 5.9897 10 1 2.5146 1.5551 6.9290 11 6 2.7352 3.4732 5.9777 12 7 3.1241 4.0727 4.8810 13 14 2.4245 4.4698 7.5269 14 1 3.7024 4.6563 8.2601 15 1 1.8668 5.7960 7.1589 16 1 1.4574 3.7492 8.3933 17 6 1.9426 2.0420 3.6230 18 6 1.8200 1.3568 2.4507 19 6 2.0401 -0.7213 -1.2491 20 6 1.5301 -2.1638 -1.2491 21 6 1.5301 -0.0001 -2.4985 22 6 3.5701 -0.7207 -1.2494 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 2.2489 -1.6317 1.1528 27 1 2.8708 -1.7073 3.4775 28 1 3.1085 -0.4982 5.5875 29 1 3.2514 5.0343 4.8728 30 1 1.6813 3.0889 3.6681 31 1 1.4612 1.8622 1.5663 32 1 0.4401 -2.1638 -1.2492 33 1 1.8931 -2.6776 -2.1393 34 1 1.8933 -2.6776 -0.3591 35 1 1.8935 1.0276 -2.4985 36 1 1.8932 -0.5143 -3.3883 37 1 0.4402 -0.0001 -2.4985 38 1 3.9337 -1.2343 -0.3594 39 1 3.9335 -1.2351 -2.1391 40 1 3.9331 0.3071 -1.2496 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309813349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:49 Heat of formation + Delta-G solvation = 3.984518 kcal Electronic energy + Delta-G solvation = -18080.356817 eV Core-core repulsion = 15472.964162 eV Total energy + Delta-G solvation = -2607.392654 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.00854 -37.22260 -34.18258 -32.51895 -29.97267 -29.31378 -28.28664 -27.30777 -26.73190 -24.42394 -22.72370 -21.11860 -20.05103 -18.15486 -17.16507 -16.33952 -15.38433 -14.95529 -14.50144 -13.95527 -13.86569 -13.65463 -13.24022 -12.74912 -12.53272 -12.21747 -12.08452 -11.98603 -11.76742 -11.66069 -11.56010 -11.33738 -11.12348 -10.98253 -10.86715 -10.59819 -10.55099 -10.32788 -10.11279 -9.65665 -9.22793 -9.14152 -8.48021 -7.43840 -6.59305 -6.31204 -3.98314 2.95174 3.14757 3.17319 3.22408 3.39899 4.08809 4.37040 4.78359 4.80811 4.91613 5.01341 5.47953 5.54364 5.62425 5.67879 5.78713 5.83834 5.88794 5.92877 6.00772 6.01613 6.08505 6.19005 6.24207 6.32760 6.37020 6.41605 6.48131 6.69111 6.98969 7.02437 7.25320 7.40664 7.62656 7.74480 7.90275 8.20223 8.35644 8.57021 8.77489 8.87151 9.10866 9.20857 10.41990 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041099 B = 0.004877 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.120956 B = 5739.749074 C = 5971.003124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.170 3.830 3 H 0.071 0.929 4 N -0.753 5.753 5 C 0.098 3.902 6 C -0.162 4.162 7 C -0.186 4.186 8 C 0.073 3.927 9 C -0.468 4.468 10 H 0.071 0.929 11 C 0.075 3.925 12 N -0.810 5.810 13 Si 0.901 3.099 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.123 4.123 18 C -0.165 4.165 19 C -0.076 4.076 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.137 4.137 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.382 0.618 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.275 0.725 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 -6.261 -11.321 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.063 3.937 3 H 0.089 0.911 4 N -0.388 5.388 5 C 0.001 3.999 6 C -0.185 4.185 7 C -0.206 4.206 8 C 0.070 3.930 9 C -0.499 4.499 10 H 0.089 0.911 11 C -0.140 4.140 12 N -0.437 5.437 13 Si 0.726 3.274 14 H -0.199 1.199 15 H -0.203 1.203 16 H -0.187 1.187 17 C -0.143 4.143 18 C -0.187 4.187 19 C -0.077 4.077 20 C -0.198 4.198 21 C -0.198 4.198 22 C -0.195 4.195 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.215 0.785 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.745 -5.868 -11.487 13.188 hybrid contribution 0.053 0.225 0.686 0.724 sum -2.692 -5.643 -10.801 12.481 Atomic orbital electron populations 1.22419 0.97380 1.01624 1.01519 1.20564 0.92583 0.96310 0.84245 0.91149 1.44010 1.76917 1.10969 1.06950 1.17351 1.05191 0.91721 0.85610 1.19793 1.08067 0.97451 0.93145 1.20537 1.08115 0.96009 0.95973 1.17482 0.91135 0.90977 0.93416 1.19352 1.45216 0.91731 0.93633 0.91056 1.25773 0.92615 0.98422 0.97154 1.69859 1.34356 1.11046 1.28453 0.86437 0.79351 0.79158 0.82486 1.19897 1.20319 1.18701 1.20926 1.01268 0.99828 0.92308 1.20114 1.08112 0.92577 0.97884 1.20785 0.95947 0.95722 0.95198 1.21900 1.01181 0.95523 1.01230 1.21901 1.01172 1.00262 0.96510 1.21812 0.94343 1.01974 1.01324 0.92793 0.92165 0.92802 0.78464 0.89786 0.89201 0.91423 0.86554 0.89347 0.92319 0.93087 0.92697 0.92563 0.92865 0.92281 0.92162 0.93365 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 8.70 37.16 0.32 -2.06 16 2 C 0.17 2.52 1.53 -67.93 -0.10 2.42 16 3 H 0.07 1.19 6.44 -51.93 -0.33 0.85 16 4 N -0.75 -12.98 4.44 -52.03 -0.23 -13.21 16 5 C 0.10 2.15 6.65 -83.69 -0.56 1.59 16 6 C -0.16 -3.69 9.82 -39.77 -0.39 -4.08 16 7 C -0.19 -4.69 9.74 -39.26 -0.38 -5.07 16 8 C 0.07 2.00 5.57 -106.79 -0.59 1.40 16 9 C -0.47 -12.93 9.03 -37.87 -0.34 -13.27 16 10 H 0.07 1.91 7.90 -52.49 -0.41 1.49 16 11 C 0.08 1.97 5.13 -17.34 -0.09 1.88 16 12 N -0.81 -21.83 10.98 55.54 0.61 -21.22 16 13 Si 0.90 19.49 29.59 -169.99 -5.03 14.46 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 17 C -0.12 -3.27 8.63 -39.27 -0.34 -3.61 16 18 C -0.17 -3.89 8.75 -39.77 -0.35 -4.24 16 19 C -0.08 -0.90 0.59 -154.51 -0.09 -0.99 16 20 C -0.14 -1.51 7.95 37.15 0.30 -1.22 16 21 C -0.14 -1.45 8.12 37.16 0.30 -1.15 16 22 C -0.14 -1.69 8.32 37.16 0.31 -1.38 16 23 H 0.05 0.71 6.43 -51.93 -0.33 0.38 16 24 H 0.06 0.98 7.67 -51.93 -0.40 0.58 16 25 H 0.05 0.65 6.43 -51.92 -0.33 0.31 16 26 H 0.38 6.01 6.65 -40.82 -0.27 5.74 16 27 H 0.08 1.69 8.06 -52.48 -0.42 1.27 16 28 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 29 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 30 H 0.12 3.21 6.19 -52.49 -0.32 2.89 16 31 H 0.09 1.92 6.05 -52.48 -0.32 1.60 16 32 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.61 6.51 -51.93 -0.34 0.27 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 38 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 310.57 15.07 4.68 4.68 Total: -1.00 -27.87 310.57 -8.20 -36.06 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.22 Total: 9.01 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: -2.01 Total: -29.79 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.38 Total: -34.43 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.87 -8.20 -36.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309813349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.047 kcal (2) G-P(sol) polarization free energy of solvation -27.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds