Wall clock time and date at job start Mon Mar 30 2020 06:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47381 * 2 1 4 4 N 1.46505 * 109.46884 * 119.99478 * 2 1 3 5 5 C 1.38853 * 120.00646 * 275.00171 * 4 2 1 6 6 C 1.39559 * 119.84677 * 179.97438 * 5 4 2 7 7 C 1.36339 * 120.16380 * 179.97438 * 6 5 4 8 8 C 1.40895 * 119.83328 * 359.97438 * 7 6 5 9 9 C 1.41142 * 120.15050 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00179 * 335.18844 * 9 8 7 11 11 C 1.39862 * 119.99548 * 155.19715 * 9 8 7 12 12 N 1.30901 * 120.00443 * 342.28826 * 11 9 8 13 13 Si 1.86803 * 119.99968 * 162.28586 * 11 9 8 14 14 H 1.48501 * 109.47245 * 94.65287 * 13 11 9 15 15 H 1.48503 * 109.47218 * 214.65385 * 13 11 9 16 16 H 1.48504 * 109.46956 * 334.65203 * 13 11 9 17 17 C 1.40886 * 119.68848 * 0.27755 * 8 7 6 18 18 C 1.36336 * 119.83300 * 359.43811 * 17 8 7 19 19 C 1.53001 * 109.47655 * 239.99492 * 2 1 3 20 20 C 1.52995 * 109.47157 * 300.00440 * 19 2 1 21 21 C 1.53004 * 109.46759 * 60.00224 * 19 2 1 22 22 C 1.52997 * 109.47289 * 179.97438 * 19 2 1 23 23 H 1.09002 * 109.47381 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47660 * 300.00608 * 1 2 3 25 25 H 1.09007 * 109.46911 * 60.00549 * 1 2 3 26 26 H 0.97003 * 119.99738 * 95.00069 * 4 2 1 27 27 H 1.08005 * 119.91927 * 359.97438 * 6 5 4 28 28 H 1.08003 * 120.08637 * 179.97438 * 7 6 5 29 29 H 0.97003 * 120.00170 * 180.02562 * 12 11 9 30 30 H 1.07997 * 120.07487 * 179.70336 * 17 8 7 31 31 H 1.08004 * 119.91819 * 180.27851 * 18 17 8 32 32 H 1.09000 * 109.47332 * 59.99976 * 20 19 2 33 33 H 1.09005 * 109.47377 * 179.97438 * 20 19 2 34 34 H 1.09000 * 109.47400 * 299.99970 * 20 19 2 35 35 H 1.09002 * 109.46943 * 60.00310 * 21 19 2 36 36 H 1.08996 * 109.46674 * 180.02562 * 21 19 2 37 37 H 1.08998 * 109.47101 * 300.00267 * 21 19 2 38 38 H 1.09002 * 109.47074 * 60.00546 * 22 19 2 39 39 H 1.09005 * 109.47019 * 179.97438 * 22 19 2 40 40 H 1.09002 * 109.47566 * 300.00397 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1508 0.0021 2.3924 6 6 2.6158 -0.6591 3.5300 7 6 2.7490 0.0149 4.7077 8 6 2.4164 1.3824 4.7742 9 6 2.5522 2.0867 5.9897 10 1 2.5146 1.5551 6.9290 11 6 2.7352 3.4732 5.9777 12 7 3.1241 4.0727 4.8810 13 14 2.4245 4.4698 7.5269 14 1 3.7024 4.6563 8.2601 15 1 1.8668 5.7960 7.1589 16 1 1.4574 3.7492 8.3933 17 6 1.9426 2.0420 3.6230 18 6 1.8200 1.3568 2.4507 19 6 2.0401 -0.7213 -1.2491 20 6 1.5301 -2.1638 -1.2491 21 6 1.5301 -0.0001 -2.4985 22 6 3.5701 -0.7207 -1.2494 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 2.2489 -1.6317 1.1528 27 1 2.8708 -1.7073 3.4775 28 1 3.1085 -0.4982 5.5875 29 1 3.2514 5.0343 4.8728 30 1 1.6813 3.0889 3.6681 31 1 1.4612 1.8622 1.5663 32 1 0.4401 -2.1638 -1.2492 33 1 1.8931 -2.6776 -2.1393 34 1 1.8933 -2.6776 -0.3591 35 1 1.8935 1.0276 -2.4985 36 1 1.8932 -0.5143 -3.3883 37 1 0.4402 -0.0001 -2.4985 38 1 3.9337 -1.2343 -0.3594 39 1 3.9335 -1.2351 -2.1391 40 1 3.9331 0.3071 -1.2496 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309813349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:49 Heat of formation + Delta-G solvation = -9.926348 kcal Electronic energy + Delta-G solvation = -18080.960037 eV Core-core repulsion = 15472.964162 eV Total energy + Delta-G solvation = -2607.995875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.38130 -38.84741 -35.90552 -34.19516 -31.52881 -31.08577 -29.88789 -28.17722 -27.82801 -26.18300 -24.08158 -22.96928 -21.80214 -19.33217 -19.14198 -17.91019 -16.82165 -16.69970 -15.82089 -15.44116 -15.16187 -14.74938 -14.66498 -14.38130 -14.16483 -13.83050 -13.45652 -13.39026 -13.15053 -12.81018 -12.74976 -12.70871 -12.66099 -12.53222 -12.26919 -12.12616 -11.64132 -11.57877 -11.51678 -11.24067 -11.09129 -10.98862 -10.25662 -9.38266 -8.53449 -8.10937 -5.98709 1.12634 1.20152 1.39766 1.52706 1.60110 2.27921 2.86015 2.95235 3.76327 3.85856 3.95942 4.05294 4.39857 4.50184 4.53399 4.55185 4.60097 4.82455 4.83950 4.87352 4.96039 5.03852 5.07319 5.09885 5.10958 5.16552 5.23730 5.25175 5.30328 5.39722 5.47227 5.53164 5.63072 5.73095 5.84407 5.99212 6.20658 6.41845 6.70534 6.91809 7.10035 7.18965 7.37207 8.49857 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041099 B = 0.004877 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.120956 B = 5739.749074 C = 5971.003124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.164 3.836 3 H 0.049 0.951 4 N -0.741 5.741 5 C 0.121 3.879 6 C -0.170 4.170 7 C -0.195 4.195 8 C 0.033 3.967 9 C -0.507 4.507 10 H 0.067 0.933 11 C 0.032 3.968 12 N -0.844 5.844 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.268 1.268 16 H -0.261 1.261 17 C -0.142 4.142 18 C -0.174 4.174 19 C -0.069 4.069 20 C -0.139 4.139 21 C -0.139 4.139 22 C -0.137 4.137 23 H 0.065 0.935 24 H 0.032 0.968 25 H 0.076 0.924 26 H 0.393 0.607 27 H 0.116 0.884 28 H 0.095 0.905 29 H 0.281 0.719 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 -7.508 -12.893 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.067 0.933 4 N -0.376 5.376 5 C 0.021 3.979 6 C -0.192 4.192 7 C -0.215 4.215 8 C 0.030 3.970 9 C -0.539 4.539 10 H 0.085 0.915 11 C -0.179 4.179 12 N -0.473 5.473 13 Si 0.797 3.203 14 H -0.190 1.190 15 H -0.193 1.193 16 H -0.185 1.185 17 C -0.162 4.162 18 C -0.196 4.196 19 C -0.070 4.070 20 C -0.197 4.197 21 C -0.197 4.197 22 C -0.195 4.195 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.095 0.905 26 H 0.229 0.771 27 H 0.133 0.867 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.185 -7.151 -13.103 15.264 hybrid contribution 0.195 0.476 0.990 1.116 sum -2.991 -6.675 -12.113 14.150 Atomic orbital electron populations 1.22350 0.96310 1.02350 1.01343 1.20758 0.93328 0.95470 0.84602 0.93337 1.44066 1.75885 1.11443 1.06179 1.17439 1.02271 0.91175 0.87025 1.20086 1.07712 0.98929 0.92481 1.20748 1.07950 0.95508 0.97284 1.17801 0.92901 0.92312 0.93989 1.19583 1.47551 0.93108 0.93650 0.91528 1.26597 0.91739 0.98986 1.00619 1.69926 1.35178 1.11605 1.30568 0.85309 0.79373 0.77513 0.78134 1.18999 1.19286 1.18524 1.20848 1.02684 0.99241 0.93473 1.20232 1.08407 0.93550 0.97431 1.20738 0.95577 0.96522 0.94139 1.21894 1.01511 0.94339 1.01913 1.21898 1.01696 0.99937 0.96158 1.21816 0.94701 1.01212 1.01723 0.91560 0.94895 0.90500 0.77086 0.86653 0.88675 0.90843 0.88590 0.88001 0.91787 0.91273 0.93208 0.93137 0.91086 0.91457 0.93528 0.91208 0.94067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 8.70 71.98 0.63 -3.65 16 2 C 0.16 4.59 1.53 44.99 0.07 4.66 16 3 H 0.05 1.60 6.44 -2.39 -0.02 1.58 16 4 N -0.74 -24.23 4.44 -318.54 -1.42 -25.65 16 5 C 0.12 5.18 6.65 38.67 0.26 5.44 16 6 C -0.17 -7.58 9.82 22.15 0.22 -7.36 16 7 C -0.19 -9.97 9.74 22.48 0.22 -9.76 16 8 C 0.03 1.87 5.57 -21.27 -0.12 1.75 16 9 C -0.51 -29.20 9.03 23.38 0.21 -28.98 16 10 H 0.07 3.72 7.90 -2.91 -0.02 3.69 16 11 C 0.03 1.73 5.13 85.22 0.44 2.16 16 12 N -0.84 -47.16 10.98 21.81 0.24 -46.92 16 13 Si 0.98 40.90 29.59 68.60 2.03 42.93 16 14 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 15 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 16 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 17 C -0.14 -7.87 8.63 22.47 0.19 -7.68 16 18 C -0.17 -8.34 8.75 22.15 0.19 -8.15 16 19 C -0.07 -1.45 0.59 -52.18 -0.03 -1.48 16 20 C -0.14 -2.47 7.95 71.98 0.57 -1.90 16 21 C -0.14 -2.42 8.12 71.98 0.58 -1.84 16 22 C -0.14 -3.07 8.32 71.98 0.60 -2.47 16 23 H 0.07 1.56 6.43 -2.39 -0.02 1.54 16 24 H 0.03 1.03 7.67 -2.39 -0.02 1.01 16 25 H 0.08 1.64 6.43 -2.38 -0.02 1.62 16 26 H 0.39 11.35 6.65 -92.71 -0.62 10.73 16 27 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 28 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 29 H 0.28 14.29 8.30 -92.71 -0.77 13.52 16 30 H 0.10 5.60 6.19 -2.91 -0.02 5.59 16 31 H 0.10 4.50 6.05 -2.91 -0.02 4.48 16 32 H 0.06 1.08 6.43 -2.39 -0.02 1.07 16 33 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.05 0.93 6.51 -2.39 -0.02 0.92 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.07 6.43 -2.39 -0.02 1.05 16 38 H 0.05 1.16 7.45 -2.39 -0.02 1.14 16 39 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -62.14 310.57 5.29 -56.85 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.40 Total: 32.02 kcal Atomic # 6 Polarization: -63.28 SS G_CDS: 4.03 Total: -59.24 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -1.18 Total: -72.57 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -62.14 5.29 -56.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309813349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.928 kcal (2) G-P(sol) polarization free energy of solvation -62.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds