Wall clock time and date at job start Mon Mar 30 2020 06:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47087 * 2 1 4 4 N 1.46504 * 109.47427 * 240.00204 * 2 1 3 5 5 C 1.38860 * 120.00084 * 84.99295 * 4 2 1 6 6 C 1.39571 * 119.83810 * 0.25432 * 5 4 2 7 7 C 1.36340 * 120.15390 * 180.25480 * 6 5 4 8 8 C 1.40882 * 119.84160 * 359.49213 * 7 6 5 9 9 C 1.41138 * 120.15882 * 180.27617 * 8 7 6 10 10 H 1.07996 * 119.99962 * 335.08524 * 9 8 7 11 11 C 1.39865 * 119.99771 * 155.08834 * 9 8 7 12 12 N 1.30901 * 120.00243 * 342.12506 * 11 9 8 13 13 Si 1.86802 * 119.99638 * 162.12643 * 11 9 8 14 14 H 1.48504 * 109.46804 * 94.65268 * 13 11 9 15 15 H 1.48507 * 109.47003 * 214.64709 * 13 11 9 16 16 H 1.48494 * 109.47401 * 334.65143 * 13 11 9 17 17 C 1.40887 * 119.68680 * 0.25971 * 8 7 6 18 18 C 1.36341 * 119.83842 * 359.97438 * 17 8 7 19 19 C 1.52994 * 109.47499 * 120.00129 * 2 1 3 20 20 C 1.53006 * 109.47564 * 180.02562 * 19 2 1 21 21 C 1.53007 * 109.47020 * 299.99885 * 19 2 1 22 22 C 1.52997 * 109.47284 * 59.99895 * 19 2 1 23 23 H 1.08997 * 109.46768 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46777 * 299.99557 * 1 2 3 25 25 H 1.08997 * 109.47104 * 59.99834 * 1 2 3 26 26 H 0.96999 * 119.99746 * 265.00417 * 4 2 1 27 27 H 1.08001 * 119.92617 * 0.02562 * 6 5 4 28 28 H 1.08003 * 120.08120 * 179.77498 * 7 6 5 29 29 H 0.97004 * 119.99917 * 179.97438 * 12 11 9 30 30 H 1.07999 * 120.08308 * 180.02562 * 17 8 7 31 31 H 1.07997 * 119.92025 * 180.02562 * 18 17 8 32 32 H 1.08997 * 109.46925 * 59.99488 * 20 19 2 33 33 H 1.08997 * 109.47168 * 180.02562 * 20 19 2 34 34 H 1.09001 * 109.46555 * 300.00217 * 20 19 2 35 35 H 1.09001 * 109.46824 * 60.00495 * 21 19 2 36 36 H 1.08997 * 109.47188 * 179.97438 * 21 19 2 37 37 H 1.08997 * 109.47138 * 300.00308 * 21 19 2 38 38 H 1.09003 * 109.46856 * 60.00540 * 22 19 2 39 39 H 1.09001 * 109.47064 * 180.02562 * 22 19 2 40 40 H 1.09006 * 109.47114 * 300.00174 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1509 0.0021 -2.3924 6 6 1.8229 1.3575 -2.4499 7 6 1.9456 2.0427 -3.6223 8 6 2.4150 1.3819 -4.7746 9 6 2.5501 2.0861 -5.9902 10 1 1.9522 2.9665 -6.1737 11 6 3.4585 1.6437 -6.9574 12 7 4.4169 0.8162 -6.6253 13 14 3.3040 2.2338 -8.7230 14 1 4.1874 3.4092 -8.9311 15 1 3.7062 1.1426 -9.6466 16 1 1.8958 2.6186 -8.9949 17 6 2.7491 0.0149 -4.7077 18 6 2.6169 -0.6589 -3.5298 19 6 2.0401 -0.7212 1.2491 20 6 3.5701 -0.7207 1.2495 21 6 1.5301 0.0000 2.4985 22 6 1.5301 -2.1637 1.2492 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 2.2490 -1.6317 -1.1526 27 1 1.4675 1.8640 -1.5647 28 1 1.6880 3.0906 -3.6664 29 1 5.0466 0.5091 -7.2962 30 1 3.1099 -0.4979 -5.5870 31 1 2.8730 -1.7067 -3.4769 32 1 3.9330 0.3071 1.2497 33 1 3.9334 -1.2349 2.1392 34 1 3.9337 -1.2342 0.3594 35 1 0.4401 -0.0001 2.4985 36 1 1.8931 -0.5140 3.3884 37 1 1.8934 1.0277 2.4984 38 1 1.8935 -2.6775 0.3592 39 1 1.8932 -2.6774 2.1394 40 1 0.4401 -2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309813350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:52 Heat of formation + Delta-G solvation = 4.032809 kcal Electronic energy + Delta-G solvation = -18033.709666 eV Core-core repulsion = 15426.319106 eV Total energy + Delta-G solvation = -2607.390560 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.01964 -37.22674 -34.19296 -32.48725 -30.15823 -29.10778 -28.34257 -27.30864 -26.76036 -24.42624 -22.78912 -20.97782 -20.14160 -18.23735 -17.10119 -16.24330 -15.55670 -14.90011 -14.51207 -13.97614 -13.87248 -13.66124 -13.25607 -12.74932 -12.52548 -12.22860 -12.09127 -11.94050 -11.79060 -11.71819 -11.53776 -11.32715 -11.15548 -10.99512 -10.81190 -10.70482 -10.55385 -10.32257 -10.12786 -9.62108 -9.24529 -9.16250 -8.47069 -7.43630 -6.59698 -6.31745 -3.98218 2.94935 3.14800 3.17305 3.22458 3.39956 4.08776 4.36497 4.76936 4.80292 4.90485 5.00318 5.46449 5.52530 5.60942 5.66276 5.77335 5.82879 5.88474 5.90901 5.99030 6.00586 6.07087 6.17009 6.22914 6.33432 6.36854 6.39900 6.45406 6.67147 6.93139 7.12242 7.25806 7.36668 7.66677 7.71991 7.86096 8.19813 8.39545 8.57428 8.75276 8.86906 9.10796 9.20821 10.41779 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.049734 B = 0.004629 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.861302 B = 6047.486159 C = 6235.468205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.170 3.830 3 H 0.069 0.931 4 N -0.753 5.753 5 C 0.098 3.902 6 C -0.161 4.161 7 C -0.188 4.188 8 C 0.073 3.927 9 C -0.468 4.468 10 H 0.071 0.929 11 C 0.075 3.925 12 N -0.809 5.809 13 Si 0.901 3.099 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.122 4.122 18 C -0.166 4.166 19 C -0.076 4.076 20 C -0.137 4.137 21 C -0.140 4.140 22 C -0.141 4.141 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.382 0.618 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.275 0.725 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 -3.973 12.546 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.063 3.937 3 H 0.087 0.913 4 N -0.389 5.389 5 C 0.001 3.999 6 C -0.184 4.184 7 C -0.208 4.208 8 C 0.070 3.930 9 C -0.499 4.499 10 H 0.090 0.910 11 C -0.140 4.140 12 N -0.437 5.437 13 Si 0.726 3.274 14 H -0.199 1.199 15 H -0.203 1.203 16 H -0.187 1.187 17 C -0.142 4.142 18 C -0.188 4.188 19 C -0.077 4.077 20 C -0.195 4.195 21 C -0.198 4.198 22 C -0.199 4.199 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.216 0.784 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.513 -3.932 12.524 13.588 hybrid contribution 0.172 -0.080 -0.846 0.867 sum -3.341 -4.012 11.678 12.792 Atomic orbital electron populations 1.22416 0.97401 1.01684 1.01446 1.20557 0.92570 0.96233 0.84321 0.91260 1.44021 1.76912 1.11028 1.06903 1.17352 1.04880 0.91838 0.85813 1.19888 1.08317 0.92811 0.97342 1.20559 1.09692 0.97753 0.92803 1.17477 0.91816 0.91587 0.92095 1.19352 1.19700 1.11182 0.99706 0.91047 1.25774 0.93713 0.94067 1.00414 1.69860 1.11106 1.27719 1.35010 0.86436 0.79575 0.78917 0.82500 1.19900 1.20319 1.18702 1.20901 1.02612 0.94379 0.96295 1.20029 1.07578 0.97807 0.93374 1.20789 0.95962 0.95758 0.95166 1.21813 0.94322 1.01932 1.01401 1.21900 1.01158 1.00212 0.96545 1.21904 1.01172 0.95507 1.01285 0.92752 0.92822 0.92202 0.78375 0.89401 0.89266 0.91419 0.86483 0.89713 0.92753 0.93346 0.92101 0.92290 0.92854 0.92611 0.92651 0.93071 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 8.71 37.16 0.32 -2.01 16 2 C 0.17 2.47 1.54 -67.93 -0.10 2.37 16 3 H 0.07 1.12 6.44 -51.93 -0.33 0.79 16 4 N -0.75 -12.98 4.44 -52.03 -0.23 -13.22 16 5 C 0.10 2.14 6.65 -83.69 -0.56 1.59 16 6 C -0.16 -3.67 8.75 -39.77 -0.35 -4.01 16 7 C -0.19 -4.73 9.74 -39.27 -0.38 -5.11 16 8 C 0.07 2.01 5.57 -106.79 -0.59 1.41 16 9 C -0.47 -12.93 9.03 -37.87 -0.34 -13.27 16 10 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 11 C 0.08 1.97 5.13 -17.34 -0.09 1.88 16 12 N -0.81 -21.81 10.98 55.54 0.61 -21.20 16 13 Si 0.90 19.49 29.59 -169.99 -5.03 14.46 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 17 C -0.12 -3.24 8.63 -39.26 -0.34 -3.58 16 18 C -0.17 -3.92 9.82 -39.77 -0.39 -4.31 16 19 C -0.08 -0.89 0.59 -154.51 -0.09 -0.98 16 20 C -0.14 -1.68 8.32 37.16 0.31 -1.37 16 21 C -0.14 -1.41 8.12 37.16 0.30 -1.11 16 22 C -0.14 -1.51 7.95 37.16 0.30 -1.22 16 23 H 0.05 0.71 6.43 -51.93 -0.33 0.37 16 24 H 0.05 0.62 6.43 -51.93 -0.33 0.29 16 25 H 0.06 0.94 7.69 -51.93 -0.40 0.55 16 26 H 0.38 6.11 6.65 -40.82 -0.27 5.84 16 27 H 0.09 1.80 6.06 -52.49 -0.32 1.48 16 28 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 29 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 30 H 0.12 3.23 6.18 -52.49 -0.32 2.90 16 31 H 0.08 1.82 8.06 -52.49 -0.42 1.39 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.82 7.45 -51.93 -0.39 0.44 16 35 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.62 6.51 -51.93 -0.34 0.28 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 LS Contribution 310.60 15.07 4.68 4.68 Total: -1.00 -27.86 310.60 -8.20 -36.06 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.22 Total: 8.94 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: -2.01 Total: -29.72 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.38 Total: -34.42 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.86 -8.20 -36.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309813350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.091 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds